RNA–Protein interactions for RNA: ENST00000467733.1

SSR3-204, Transcript of signal sequence receptor subunit 3, humanhuman

TSL 2

Gene SSR3, Length 873 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR3-204ENST00000467733 AEBP2Q6ZN18 517 aaPredicted RBP23.97■■□□□ 1.43
SSR3-204ENST00000467733 CHIC1Q5VXU3 224 aa22.76■■□□□ 1.23
SSR3-204ENST00000467733 SENP3Q9H4L4 574 aaPredicted RBP20.6■□□□□ 0.89
SSR3-204ENST00000467733 PHF23Q9BUL5 403 aaPredicted RBP20.24■□□□□ 0.83
SSR3-204ENST00000467733 FOXD1Q16676 465 aa19.11■□□□□ 0.65
SSR3-204ENST00000467733 PLPPR3Q6T4P5 718 aa18.19■□□□□ 0.5
SSR3-204ENST00000467733 MSH5O43196 834 aa18.04■□□□□ 0.48
SSR3-204ENST00000467733 PIAS4Q8N2W9 510 aaPredicted RBP17.89■□□□□ 0.45
SSR3-204ENST00000467733 PPP6R1Q9UPN7 881 aa17.75■□□□□ 0.43
SSR3-204ENST00000467733 ADRA2BP18089 450 aa17.71■□□□□ 0.43
SSR3-204ENST00000467733 POTEDQ86YR6 584 aa17.67■□□□□ 0.42
SSR3-204ENST00000467733 SCAF1Q9H7N4 1312 aaKnown RBP16.34■□□□□ 0.21
SSR3-204ENST00000467733 DMRT2Q9Y5R5 561 aa16.29■□□□□ 0.2
SSR3-204ENST00000467733 MAPK8IP2Q13387 824 aaPredicted RBP16.26■□□□□ 0.19
SSR3-204ENST00000467733 PPP4R3CPQ6ZMV5 832 aa15.88■□□□□ 0.13
SSR3-204ENST00000467733 HOXD11P31277 338 aaPredicted RBP15.65■□□□□ 0.1
SSR3-204ENST00000467733 CNKSR2Q8WXI2 1034 aa15.65■□□□□ 0.1
SSR3-204ENST00000467733 DCAF8L1A6NGE4 600 aa15.61■□□□□ 0.09
SSR3-204ENST00000467733 RNF216Q9NWF9 866 aaPredicted RBP15.53■□□□□ 0.08
SSR3-204ENST00000467733 CACNB1Q02641 598 aaPredicted RBP15.48■□□□□ 0.07
SSR3-204ENST00000467733 RNF39Q9H2S5 420 aa15.33■□□□□ 0.04
SSR3-204ENST00000467733 NCBP3Q53F19 620 aaKnown RBP15.32■□□□□ 0.04
SSR3-204ENST00000467733 DNAJC5BQ9UF47 199 aa15.21■□□□□ 0.03
SSR3-204ENST00000467733 C1QBPQ07021 282 aaKnown RBP15.15■□□□□ 0.02
SSR3-204ENST00000467733 NPM3O75607 178 aaKnown RBP15.01□□□□□ -0.01
SSR3-204ENST00000467733 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.92□□□□□ -0.027e-7■■□□□ 13.2
SSR3-204ENST00000467733 KCNA4P22459 653 aa14.61□□□□□ -0.07
SSR3-204ENST00000467733 U3KPZ7 1027 aaPredicted RBP14.56□□□□□ -0.08
SSR3-204ENST00000467733 CAPN15O75808 1086 aa14.38□□□□□ -0.11
SSR3-204ENST00000467733 SPINK5Q9NQ38 1064 aaPredicted RBP14.34□□□□□ -0.11
SSR3-204ENST00000467733 SLC4A2P04920 1241 aa14.33□□□□□ -0.12
SSR3-204ENST00000467733 DSG3P32926 999 aa14.3□□□□□ -0.12
SSR3-204ENST00000467733 APLP2Q06481 763 aa14.3□□□□□ -0.12
SSR3-204ENST00000467733 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.24□□□□□ -0.13
SSR3-204ENST00000467733 HNRNPUL2Q1KMD3 747 aaKnown RBP14.24□□□□□ -0.13
SSR3-204ENST00000467733 ZNF219Q9P2Y4 722 aaPredicted RBP14.16□□□□□ -0.14
SSR3-204ENST00000467733 SAMD1Q6SPF0 538 aaPredicted RBP14.12□□□□□ -0.15
SSR3-204ENST00000467733 TRHP20396 242 aaPredicted RBP14.11□□□□□ -0.15
SSR3-204ENST00000467733 ABCB7O75027 752 aa14□□□□□ -0.17
SSR3-204ENST00000467733 MYCNP04198 464 aaPredicted RBP13.95□□□□□ -0.18
SSR3-204ENST00000467733 POTEHQ6S545 545 aa13.86□□□□□ -0.19
SSR3-204ENST00000467733 SLC4A1APQ9BWU0 796 aaKnown RBP13.83□□□□□ -0.2
SSR3-204ENST00000467733 RBM42Q9BTD8 480 aaKnown RBP13.75□□□□□ -0.21
SSR3-204ENST00000467733 FOXD4L1Q9NU39 408 aa13.74□□□□□ -0.21
SSR3-204ENST00000467733 POLA2Q14181 598 aa13.71□□□□□ -0.21
SSR3-204ENST00000467733 ZBTB12Q9Y330 459 aaPredicted RBP13.55□□□□□ -0.24
SSR3-204ENST00000467733 ATF5Q9Y2D1 282 aaPredicted RBP13.51□□□□□ -0.25
SSR3-204ENST00000467733 CHRDL2Q6WN34 429 aa13.42□□□□□ -0.26
SSR3-204ENST00000467733 ZBTB22O15209 634 aa13.4□□□□□ -0.26
SSR3-204ENST00000467733 AKT1S1Q96B36 256 aa13.37□□□□□ -0.27
SSR3-204ENST00000467733 ATXN8OSP0DMR3 200 aa13.36□□□□□ -0.27
SSR3-204ENST00000467733 OSCARQ8IYS5 282 aa13.29□□□□□ -0.28
SSR3-204ENST00000467733 REM2Q8IYK8 340 aaPredicted RBP13.2□□□□□ -0.3
SSR3-204ENST00000467733 FBLN2P98095 1184 aa13.13□□□□□ -0.31
SSR3-204ENST00000467733 SPDYE2BA6NHP3 402 aa13.07□□□□□ -0.32
SSR3-204ENST00000467733 SPDYE6P0CI01 402 aa13.07□□□□□ -0.32
SSR3-204ENST00000467733 SPDYE2Q495Y8 402 aa13.07□□□□□ -0.32
SSR3-204ENST00000467733 PITPNM1O00562 1244 aa13.06□□□□□ -0.32
SSR3-204ENST00000467733 PIP4P2Q8N4L2 257 aa13.06□□□□□ -0.32
SSR3-204ENST00000467733 FXR2P51116 673 aaKnown RBP eCLIP12.97□□□□□ -0.33
SSR3-204ENST00000467733 SP7Q8TDD2 431 aaPredicted RBP12.96□□□□□ -0.33
SSR3-204ENST00000467733 MKRN4PQ13434 485 aaPredicted RBP12.91□□□□□ -0.34
SSR3-204ENST00000467733 SPDYE1Q8NFV5 336 aaPredicted RBP12.87□□□□□ -0.35
SSR3-204ENST00000467733 ZNF692Q9BU19 519 aaPredicted RBP12.86□□□□□ -0.35
SSR3-204ENST00000467733 HAX1O00165 279 aa12.85□□□□□ -0.35
SSR3-204ENST00000467733 SSUH2Q9Y2M2 353 aa12.85□□□□□ -0.35
SSR3-204ENST00000467733 CLEC11AQ9Y240 323 aa12.79□□□□□ -0.36
SSR3-204ENST00000467733 PRKAR2AP13861 404 aaKnown RBP12.73□□□□□ -0.37
SSR3-204ENST00000467733 CSRNP3Q8WYN3 585 aa12.71□□□□□ -0.37
SSR3-204ENST00000467733 PABPN1Q86U42 306 aaKnown RBP eCLIP12.65□□□□□ -0.38
SSR3-204ENST00000467733 PRR29P0C7W0 189 aa12.59□□□□□ -0.39
SSR3-204ENST00000467733 EVX2Q03828 476 aa12.59□□□□□ -0.39
SSR3-204ENST00000467733 C19orf67A6NJJ6 358 aa12.56□□□□□ -0.4
SSR3-204ENST00000467733 CHADLQ6NUI6 762 aa12.52□□□□□ -0.41
SSR3-204ENST00000467733 EHMT2Q96KQ7 1210 aa12.52□□□□□ -0.41
SSR3-204ENST00000467733 GABBR2O75899 941 aa12.38□□□□□ -0.43
SSR3-204ENST00000467733 STAG3Q9UJ98 1225 aa12.37□□□□□ -0.43
SSR3-204ENST00000467733 FARP1Q9Y4F1 1045 aaPredicted RBP12.37□□□□□ -0.43
SSR3-204ENST00000467733 CD44P16070 742 aaKnown RBP12.33□□□□□ -0.44
SSR3-204ENST00000467733 SPDYE4A6NLX3 237 aa12.31□□□□□ -0.44
SSR3-204ENST00000467733 CLCN6P51797 869 aa12.29□□□□□ -0.44
SSR3-204ENST00000467733 CREBZFQ9NS37 354 aa12.22□□□□□ -0.45
SSR3-204ENST00000467733 ZNF579Q8NAF0 562 aaKnown RBP12.16□□□□□ -0.46
SSR3-204ENST00000467733 LHX8Q68G74 356 aa12.14□□□□□ -0.47
SSR3-204ENST00000467733 ZRANB1Q9UGI0 708 aa12.13□□□□□ -0.47
SSR3-204ENST00000467733 PAK3O75914 559 aaPredicted RBP12.09□□□□□ -0.47
SSR3-204ENST00000467733 NPM1P06748 294 aaKnown RBP eCLIP12.08□□□□□ -0.48
SSR3-204ENST00000467733 DCBLD2Q96PD2 775 aa12.08□□□□□ -0.48
SSR3-204ENST00000467733 POTEIP0CG38 1075 aa12.07□□□□□ -0.48
SSR3-204ENST00000467733 PROM2Q8N271 834 aa12.01□□□□□ -0.49
SSR3-204ENST00000467733 MNX1P50219 401 aaPredicted RBP11.99□□□□□ -0.49
SSR3-204ENST00000467733 GALR2O43603 387 aaPredicted RBP11.96□□□□□ -0.49
SSR3-204ENST00000467733 PHF12Q96QT6 1004 aa11.92□□□□□ -0.5
SSR3-204ENST00000467733 PLEKHG5O94827 1062 aa11.85□□□□□ -0.51
SSR3-204ENST00000467733 MS4A3Q96HJ5 214 aa11.78□□□□□ -0.52
SSR3-204ENST00000467733 TSPYL2Q9H2G4 693 aaPredicted RBP11.77□□□□□ -0.53
SSR3-204ENST00000467733 ASTLQ6HA08 431 aaPredicted RBP11.75□□□□□ -0.53
SSR3-204ENST00000467733 MIER1Q8N108 512 aa11.75□□□□□ -0.53
SSR3-204ENST00000467733 CCDC61Q9Y6R9 512 aa11.74□□□□□ -0.53
SSR3-204ENST00000467733 SLC39A7Q92504 469 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms