RNA–Protein interactions for RNA: ENST00000466862.1

GTF3C3-209, Transcript of general transcription factor IIIC subunit 3, humanhuman

TSL 2

Gene GTF3C3, Length 447 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C3-209ENST00000466862 AEBP2Q6ZN18 517 aaPredicted RBP21.77■■□□□ 1.08
GTF3C3-209ENST00000466862 CHIC1Q5VXU3 224 aa20.74■□□□□ 0.91
GTF3C3-209ENST00000466862 SENP3Q9H4L4 574 aaPredicted RBP18.43■□□□□ 0.54
GTF3C3-209ENST00000466862 PHF23Q9BUL5 403 aaPredicted RBP18.25■□□□□ 0.51
GTF3C3-209ENST00000466862 FOXD1Q16676 465 aa17.31■□□□□ 0.36
GTF3C3-209ENST00000466862 PLPPR3Q6T4P5 718 aa16.61■□□□□ 0.25
GTF3C3-209ENST00000466862 POTEDQ86YR6 584 aa16.18■□□□□ 0.18
GTF3C3-209ENST00000466862 PPP6R1Q9UPN7 881 aa16.18■□□□□ 0.18
GTF3C3-209ENST00000466862 MSH5O43196 834 aa16.13■□□□□ 0.17
GTF3C3-209ENST00000466862 PIAS4Q8N2W9 510 aaPredicted RBP16.1■□□□□ 0.17
GTF3C3-209ENST00000466862 ADRA2BP18089 450 aa16.09■□□□□ 0.17
GTF3C3-209ENST00000466862 MAPK8IP2Q13387 824 aaPredicted RBP14.82□□□□□ -0.04
GTF3C3-209ENST00000466862 DMRT2Q9Y5R5 561 aa14.63□□□□□ -0.07
GTF3C3-209ENST00000466862 SCAF1Q9H7N4 1312 aaKnown RBP14.63□□□□□ -0.07
GTF3C3-209ENST00000466862 PPP4R3CPQ6ZMV5 832 aa14.59□□□□□ -0.07
GTF3C3-209ENST00000466862 CNKSR2Q8WXI2 1034 aa14.27□□□□□ -0.13
GTF3C3-209ENST00000466862 HOXD11P31277 338 aaPredicted RBP14.19□□□□□ -0.14
GTF3C3-209ENST00000466862 RNF216Q9NWF9 866 aaPredicted RBP14.11□□□□□ -0.15
GTF3C3-209ENST00000466862 DCAF8L1A6NGE4 600 aa14.09□□□□□ -0.15
GTF3C3-209ENST00000466862 CACNB1Q02641 598 aaPredicted RBP14.03□□□□□ -0.16
GTF3C3-209ENST00000466862 NCBP3Q53F19 620 aaKnown RBP14.02□□□□□ -0.17
GTF3C3-209ENST00000466862 NPM3O75607 178 aaKnown RBP13.94□□□□□ -0.18
GTF3C3-209ENST00000466862 KCNA4P22459 653 aa13.85□□□□□ -0.19
GTF3C3-209ENST00000466862 RNF39Q9H2S5 420 aa13.82□□□□□ -0.2
GTF3C3-209ENST00000466862 DNAJC5BQ9UF47 199 aa13.68□□□□□ -0.22
GTF3C3-209ENST00000466862 C1QBPQ07021 282 aaKnown RBP13.54□□□□□ -0.24
GTF3C3-209ENST00000466862 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.39□□□□□ -0.27
GTF3C3-209ENST00000466862 SLC4A2P04920 1241 aa13.28□□□□□ -0.28
GTF3C3-209ENST00000466862 U3KPZ7 1027 aaPredicted RBP13.26□□□□□ -0.29
GTF3C3-209ENST00000466862 SLC4A1APQ9BWU0 796 aaKnown RBP13.07□□□□□ -0.32
GTF3C3-209ENST00000466862 SPINK5Q9NQ38 1064 aaPredicted RBP13.02□□□□□ -0.33
GTF3C3-209ENST00000466862 CAPN15O75808 1086 aa12.94□□□□□ -0.34
GTF3C3-209ENST00000466862 DSG3P32926 999 aa12.91□□□□□ -0.34
GTF3C3-209ENST00000466862 MYCNP04198 464 aaPredicted RBP12.86□□□□□ -0.35
GTF3C3-209ENST00000466862 FOXD4L1Q9NU39 408 aa12.85□□□□□ -0.35
GTF3C3-209ENST00000466862 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.84□□□□□ -0.35
GTF3C3-209ENST00000466862 HNRNPUL2Q1KMD3 747 aaKnown RBP12.84□□□□□ -0.35
GTF3C3-209ENST00000466862 ZBTB22O15209 634 aa12.82□□□□□ -0.36
GTF3C3-209ENST00000466862 SAMD1Q6SPF0 538 aaPredicted RBP12.81□□□□□ -0.36
GTF3C3-209ENST00000466862 APLP2Q06481 763 aa12.78□□□□□ -0.36
GTF3C3-209ENST00000466862 ZNF219Q9P2Y4 722 aaPredicted RBP12.73□□□□□ -0.37
GTF3C3-209ENST00000466862 TRHP20396 242 aaPredicted RBP12.71□□□□□ -0.37
GTF3C3-209ENST00000466862 ABCB7O75027 752 aa12.69□□□□□ -0.38
GTF3C3-209ENST00000466862 POTEHQ6S545 545 aa12.62□□□□□ -0.39
GTF3C3-209ENST00000466862 ATF5Q9Y2D1 282 aaPredicted RBP12.59□□□□□ -0.39
GTF3C3-209ENST00000466862 ATXN8OSP0DMR3 200 aa12.43□□□□□ -0.42
GTF3C3-209ENST00000466862 POLA2Q14181 598 aa12.42□□□□□ -0.42
GTF3C3-209ENST00000466862 CSRNP3Q8WYN3 585 aa12.35□□□□□ -0.43
GTF3C3-209ENST00000466862 EHMT2Q96KQ7 1210 aa12.24□□□□□ -0.45
GTF3C3-209ENST00000466862 ZBTB12Q9Y330 459 aaPredicted RBP12.2□□□□□ -0.46
GTF3C3-209ENST00000466862 RBM42Q9BTD8 480 aaKnown RBP12.19□□□□□ -0.46
GTF3C3-209ENST00000466862 CHRDL2Q6WN34 429 aa12.1□□□□□ -0.47
GTF3C3-209ENST00000466862 OSCARQ8IYS5 282 aa12.09□□□□□ -0.47
GTF3C3-209ENST00000466862 MKRN4PQ13434 485 aaPredicted RBP12.04□□□□□ -0.48
GTF3C3-209ENST00000466862 AKT1S1Q96B36 256 aa11.96□□□□□ -0.49
GTF3C3-209ENST00000466862 FBLN2P98095 1184 aa11.95□□□□□ -0.5
GTF3C3-209ENST00000466862 REM2Q8IYK8 340 aaPredicted RBP11.88□□□□□ -0.51
GTF3C3-209ENST00000466862 SPDYE2BA6NHP3 402 aa11.87□□□□□ -0.51
GTF3C3-209ENST00000466862 SPDYE6P0CI01 402 aa11.87□□□□□ -0.51
GTF3C3-209ENST00000466862 SPDYE2Q495Y8 402 aa11.87□□□□□ -0.51
GTF3C3-209ENST00000466862 PIP4P2Q8N4L2 257 aa11.82□□□□□ -0.52
GTF3C3-209ENST00000466862 SSUH2Q9Y2M2 353 aa11.81□□□□□ -0.52
GTF3C3-209ENST00000466862 PITPNM1O00562 1244 aa11.78□□□□□ -0.52
GTF3C3-209ENST00000466862 SP7Q8TDD2 431 aaPredicted RBP11.72□□□□□ -0.53
GTF3C3-209ENST00000466862 ZNF692Q9BU19 519 aaPredicted RBP11.7□□□□□ -0.54
GTF3C3-209ENST00000466862 FXR2P51116 673 aaKnown RBP eCLIP11.67□□□□□ -0.54
GTF3C3-209ENST00000466862 HAX1O00165 279 aa11.61□□□□□ -0.55
GTF3C3-209ENST00000466862 EVX2Q03828 476 aa11.57□□□□□ -0.56
GTF3C3-209ENST00000466862 PABPN1Q86U42 306 aaKnown RBP eCLIP11.57□□□□□ -0.56
GTF3C3-209ENST00000466862 SPDYE1Q8NFV5 336 aaPredicted RBP11.57□□□□□ -0.56
GTF3C3-209ENST00000466862 CLEC11AQ9Y240 323 aa11.5□□□□□ -0.57
GTF3C3-209ENST00000466862 SPDYE4A6NLX3 237 aa11.48□□□□□ -0.57
GTF3C3-209ENST00000466862 PRKAR2AP13861 404 aaKnown RBP11.45□□□□□ -0.58
GTF3C3-209ENST00000466862 PROM2Q8N271 834 aa11.39□□□□□ -0.59
GTF3C3-209ENST00000466862 CHADLQ6NUI6 762 aa11.36□□□□□ -0.59
GTF3C3-209ENST00000466862 PRR29P0C7W0 189 aa11.34□□□□□ -0.59
GTF3C3-209ENST00000466862 C19orf67A6NJJ6 358 aa11.31□□□□□ -0.6
GTF3C3-209ENST00000466862 STAG3Q9UJ98 1225 aa11.26□□□□□ -0.61
GTF3C3-209ENST00000466862 CREBZFQ9NS37 354 aa11.23□□□□□ -0.61
GTF3C3-209ENST00000466862 GABBR2O75899 941 aa11.21□□□□□ -0.61
GTF3C3-209ENST00000466862 FARP1Q9Y4F1 1045 aaPredicted RBP11.18□□□□□ -0.62
GTF3C3-209ENST00000466862 FKBP8Q14318 412 aa11.13□□□□□ -0.63
GTF3C3-209ENST00000466862 MNX1P50219 401 aaPredicted RBP11.11□□□□□ -0.63
GTF3C3-209ENST00000466862 CD44P16070 742 aaKnown RBP11.07□□□□□ -0.64
GTF3C3-209ENST00000466862 POTEIP0CG38 1075 aa11.03□□□□□ -0.64
GTF3C3-209ENST00000466862 LHX8Q68G74 356 aa11□□□□□ -0.65
GTF3C3-209ENST00000466862 ZNF579Q8NAF0 562 aaKnown RBP10.95□□□□□ -0.66
GTF3C3-209ENST00000466862 NPM1P06748 294 aaKnown RBP eCLIP10.92□□□□□ -0.66
GTF3C3-209ENST00000466862 ZRANB1Q9UGI0 708 aa10.9□□□□□ -0.66
GTF3C3-209ENST00000466862 CLCN6P51797 869 aa10.84□□□□□ -0.67
GTF3C3-209ENST00000466862 MIER1Q8N108 512 aa10.84□□□□□ -0.67
GTF3C3-209ENST00000466862 GALR2O43603 387 aaPredicted RBP10.83□□□□□ -0.68
GTF3C3-209ENST00000466862 PHF12Q96QT6 1004 aa10.82□□□□□ -0.68
GTF3C3-209ENST00000466862 PAK3O75914 559 aaPredicted RBP10.81□□□□□ -0.68
GTF3C3-209ENST00000466862 DCBLD2Q96PD2 775 aa10.81□□□□□ -0.68
GTF3C3-209ENST00000466862 PLCD3Q8N3E9 789 aa10.8□□□□□ -0.68
GTF3C3-209ENST00000466862 RASEFQ8IZ41 740 aa10.79□□□□□ -0.68
GTF3C3-209ENST00000466862 FBXO3Q9UK99 471 aa10.79□□□□□ -0.68
GTF3C3-209ENST00000466862 CCDC61Q9Y6R9 512 aa10.79□□□□□ -0.68
GTF3C3-209ENST00000466862 PLEKHG5O94827 1062 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms