RNA–Protein interactions for RNA: ENST00000466696.1

CHMP2B-202, Transcript of charged multivesicular body protein 2B, humanhuman

TSL 2

Gene CHMP2B, Length 664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2B-202ENST00000466696 AEBP2Q6ZN18 517 aaPredicted RBP27.36■■□□□ 1.97
CHMP2B-202ENST00000466696 CHIC1Q5VXU3 224 aa26.28■■□□□ 1.8
CHMP2B-202ENST00000466696 SENP3Q9H4L4 574 aaPredicted RBP23.38■■□□□ 1.33
CHMP2B-202ENST00000466696 PHF23Q9BUL5 403 aaPredicted RBP23.08■■□□□ 1.29
CHMP2B-202ENST00000466696 FOXD1Q16676 465 aa21.71■■□□□ 1.07
CHMP2B-202ENST00000466696 PLPPR3Q6T4P5 718 aa21.14■□□□□ 0.97
CHMP2B-202ENST00000466696 PPP6R1Q9UPN7 881 aa20.47■□□□□ 0.87
CHMP2B-202ENST00000466696 ADRA2BP18089 450 aa20.43■□□□□ 0.86
CHMP2B-202ENST00000466696 PIAS4Q8N2W9 510 aaPredicted RBP20.37■□□□□ 0.85
CHMP2B-202ENST00000466696 MSH5O43196 834 aa20.28■□□□□ 0.84
CHMP2B-202ENST00000466696 POTEDQ86YR6 584 aa19.31■□□□□ 0.68
CHMP2B-202ENST00000466696 SCAF1Q9H7N4 1312 aaKnown RBP18.78■□□□□ 0.6
CHMP2B-202ENST00000466696 MAPK8IP2Q13387 824 aaPredicted RBP18.67■□□□□ 0.58
CHMP2B-202ENST00000466696 DMRT2Q9Y5R5 561 aa18.56■□□□□ 0.56
CHMP2B-202ENST00000466696 PPP4R3CPQ6ZMV5 832 aa18.54■□□□□ 0.56
CHMP2B-202ENST00000466696 CNKSR2Q8WXI2 1034 aa18.16■□□□□ 0.5
CHMP2B-202ENST00000466696 HOXD11P31277 338 aaPredicted RBP17.98■□□□□ 0.47
CHMP2B-202ENST00000466696 NCBP3Q53F19 620 aaKnown RBP17.96■□□□□ 0.47
CHMP2B-202ENST00000466696 RNF216Q9NWF9 866 aaPredicted RBP17.92■□□□□ 0.46
CHMP2B-202ENST00000466696 DCAF8L1A6NGE4 600 aa17.79■□□□□ 0.44
CHMP2B-202ENST00000466696 NPM3O75607 178 aaKnown RBP17.63■□□□□ 0.41
CHMP2B-202ENST00000466696 KCNA4P22459 653 aa17.5■□□□□ 0.39
CHMP2B-202ENST00000466696 DNAJC5BQ9UF47 199 aa17.36■□□□□ 0.37
CHMP2B-202ENST00000466696 RNF39Q9H2S5 420 aa17.29■□□□□ 0.36
CHMP2B-202ENST00000466696 CACNB1Q02641 598 aaPredicted RBP17.23■□□□□ 0.35
CHMP2B-202ENST00000466696 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.14■□□□□ 0.33
CHMP2B-202ENST00000466696 C1QBPQ07021 282 aaKnown RBP17.09■□□□□ 0.33
CHMP2B-202ENST00000466696 U3KPZ7 1027 aaPredicted RBP16.77■□□□□ 0.28
CHMP2B-202ENST00000466696 SLC4A2P04920 1241 aa16.75■□□□□ 0.27
CHMP2B-202ENST00000466696 SLC4A1APQ9BWU0 796 aaKnown RBP16.61■□□□□ 0.25
CHMP2B-202ENST00000466696 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.48■□□□□ 0.23
CHMP2B-202ENST00000466696 HNRNPUL2Q1KMD3 747 aaKnown RBP16.48■□□□□ 0.23
CHMP2B-202ENST00000466696 CAPN15O75808 1086 aa16.44■□□□□ 0.22
CHMP2B-202ENST00000466696 APLP2Q06481 763 aa16.44■□□□□ 0.22
CHMP2B-202ENST00000466696 SPINK5Q9NQ38 1064 aaPredicted RBP16.44■□□□□ 0.22
CHMP2B-202ENST00000466696 SAMD1Q6SPF0 538 aaPredicted RBP16.37■□□□□ 0.21
CHMP2B-202ENST00000466696 MYCNP04198 464 aaPredicted RBP16.33■□□□□ 0.2
CHMP2B-202ENST00000466696 FOXD4L1Q9NU39 408 aa16.29■□□□□ 0.2
CHMP2B-202ENST00000466696 DSG3P32926 999 aa16.27■□□□□ 0.2
CHMP2B-202ENST00000466696 ZNF219Q9P2Y4 722 aaPredicted RBP16.25■□□□□ 0.19
CHMP2B-202ENST00000466696 TRHP20396 242 aaPredicted RBP16.23■□□□□ 0.19
CHMP2B-202ENST00000466696 ZBTB22O15209 634 aa16.06■□□□□ 0.16
CHMP2B-202ENST00000466696 ABCB7O75027 752 aa16.05■□□□□ 0.16
CHMP2B-202ENST00000466696 ATF5Q9Y2D1 282 aaPredicted RBP15.87■□□□□ 0.13
CHMP2B-202ENST00000466696 POLA2Q14181 598 aa15.86■□□□□ 0.13
CHMP2B-202ENST00000466696 ATXN8OSP0DMR3 200 aa15.8■□□□□ 0.12
CHMP2B-202ENST00000466696 ZBTB12Q9Y330 459 aaPredicted RBP15.62■□□□□ 0.09
CHMP2B-202ENST00000466696 CSRNP3Q8WYN3 585 aa15.58■□□□□ 0.08
CHMP2B-202ENST00000466696 RBM42Q9BTD8 480 aaKnown RBP15.58■□□□□ 0.08
CHMP2B-202ENST00000466696 EHMT2Q96KQ7 1210 aa15.51■□□□□ 0.07
CHMP2B-202ENST00000466696 FBLN2P98095 1184 aa15.33■□□□□ 0.04
CHMP2B-202ENST00000466696 OSCARQ8IYS5 282 aa15.32■□□□□ 0.04
CHMP2B-202ENST00000466696 AKT1S1Q96B36 256 aa15.25■□□□□ 0.03
CHMP2B-202ENST00000466696 POTEHQ6S545 545 aa15.2■□□□□ 0.02
CHMP2B-202ENST00000466696 MKRN4PQ13434 485 aaPredicted RBP15.16■□□□□ 0.02
CHMP2B-202ENST00000466696 SPDYE2BA6NHP3 402 aa15.13■□□□□ 0.01
CHMP2B-202ENST00000466696 SPDYE6P0CI01 402 aa15.13■□□□□ 0.01
CHMP2B-202ENST00000466696 SPDYE2Q495Y8 402 aa15.13■□□□□ 0.01
CHMP2B-202ENST00000466696 CHRDL2Q6WN34 429 aa15.1■□□□□ 0.01
CHMP2B-202ENST00000466696 REM2Q8IYK8 340 aaPredicted RBP15.08■□□□□ 0
CHMP2B-202ENST00000466696 ZNF692Q9BU19 519 aaPredicted RBP14.98□□□□□ -0.01
CHMP2B-202ENST00000466696 SSUH2Q9Y2M2 353 aa14.92□□□□□ -0.02
CHMP2B-202ENST00000466696 PITPNM1O00562 1244 aa14.91□□□□□ -0.02
CHMP2B-202ENST00000466696 SPDYE1Q8NFV5 336 aaPredicted RBP14.81□□□□□ -0.04
CHMP2B-202ENST00000466696 PIP4P2Q8N4L2 257 aa14.78□□□□□ -0.04
CHMP2B-202ENST00000466696 PABPN1Q86U42 306 aaKnown RBP eCLIP14.75□□□□□ -0.05
CHMP2B-202ENST00000466696 FXR2P51116 673 aaKnown RBP eCLIP14.74□□□□□ -0.05
CHMP2B-202ENST00000466696 CLEC11AQ9Y240 323 aa14.74□□□□□ -0.05
CHMP2B-202ENST00000466696 SPDYE4A6NLX3 237 aa14.62□□□□□ -0.07
CHMP2B-202ENST00000466696 PRR29P0C7W0 189 aa14.56□□□□□ -0.08
CHMP2B-202ENST00000466696 PRKAR2AP13861 404 aaKnown RBP14.54□□□□□ -0.08
CHMP2B-202ENST00000466696 HAX1O00165 279 aa14.46□□□□□ -0.09
CHMP2B-202ENST00000466696 STAG3Q9UJ98 1225 aa14.45□□□□□ -0.1
CHMP2B-202ENST00000466696 CHADLQ6NUI6 762 aa14.4□□□□□ -0.1
CHMP2B-202ENST00000466696 SP7Q8TDD2 431 aaPredicted RBP14.37□□□□□ -0.11
CHMP2B-202ENST00000466696 PROM2Q8N271 834 aa14.3□□□□□ -0.12
CHMP2B-202ENST00000466696 C19orf67A6NJJ6 358 aa14.26□□□□□ -0.13
CHMP2B-202ENST00000466696 FARP1Q9Y4F1 1045 aaPredicted RBP14.25□□□□□ -0.13
CHMP2B-202ENST00000466696 EVX2Q03828 476 aa14.24□□□□□ -0.13
CHMP2B-202ENST00000466696 CREBZFQ9NS37 354 aa14.21□□□□□ -0.13
CHMP2B-202ENST00000466696 FKBP8Q14318 412 aa14.14□□□□□ -0.15
CHMP2B-202ENST00000466696 CD44P16070 742 aaKnown RBP14.1□□□□□ -0.15
CHMP2B-202ENST00000466696 NPM1P06748 294 aaKnown RBP eCLIP14.02□□□□□ -0.17
CHMP2B-202ENST00000466696 MNX1P50219 401 aaPredicted RBP13.99□□□□□ -0.17
CHMP2B-202ENST00000466696 GABBR2O75899 941 aa13.98□□□□□ -0.17
CHMP2B-202ENST00000466696 PLEKHG5O94827 1062 aa13.96□□□□□ -0.17
CHMP2B-202ENST00000466696 CLCN6P51797 869 aa13.94□□□□□ -0.18
CHMP2B-202ENST00000466696 ZRANB1Q9UGI0 708 aa13.94□□□□□ -0.18
CHMP2B-202ENST00000466696 PAK3O75914 559 aaPredicted RBP13.93□□□□□ -0.18
CHMP2B-202ENST00000466696 MIER1Q8N108 512 aa13.93□□□□□ -0.18
CHMP2B-202ENST00000466696 ZNF579Q8NAF0 562 aaKnown RBP13.89□□□□□ -0.19
CHMP2B-202ENST00000466696 PLCD3Q8N3E9 789 aa13.86□□□□□ -0.19
CHMP2B-202ENST00000466696 FBXO3Q9UK99 471 aa13.84□□□□□ -0.19
CHMP2B-202ENST00000466696 ZBTB47Q9UFB7 747 aaPredicted RBP13.78□□□□□ -0.2
CHMP2B-202ENST00000466696 PHF12Q96QT6 1004 aa13.73□□□□□ -0.21
CHMP2B-202ENST00000466696 TSPYL2Q9H2G4 693 aaPredicted RBP13.73□□□□□ -0.21
CHMP2B-202ENST00000466696 DCBLD2Q96PD2 775 aa13.69□□□□□ -0.22
CHMP2B-202ENST00000466696 GALR2O43603 387 aaPredicted RBP13.68□□□□□ -0.22
CHMP2B-202ENST00000466696 POTEIP0CG38 1075 aa13.65□□□□□ -0.22
CHMP2B-202ENST00000466696 RASEFQ8IZ41 740 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms