RNA–Protein interactions for RNA: ENST00000466560.1

LINC00879-204, long intergenic non-protein coding RNA 879, humanhuman

TSL 5

Gene LINC00879, Length 777 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00879-204ENST00000466560 AEBP2Q6ZN18 517 aaPredicted RBP24.87■■□□□ 1.57
LINC00879-204ENST00000466560 CHIC1Q5VXU3 224 aa24.03■■□□□ 1.44
LINC00879-204ENST00000466560 SENP3Q9H4L4 574 aaPredicted RBP21.13■□□□□ 0.97
LINC00879-204ENST00000466560 PHF23Q9BUL5 403 aaPredicted RBP21.09■□□□□ 0.97
LINC00879-204ENST00000466560 FOXD1Q16676 465 aa19.66■□□□□ 0.74
LINC00879-204ENST00000466560 PLPPR3Q6T4P5 718 aa19.39■□□□□ 0.69
LINC00879-204ENST00000466560 PPP6R1Q9UPN7 881 aa18.71■□□□□ 0.59
LINC00879-204ENST00000466560 ADRA2BP18089 450 aa18.69■□□□□ 0.58
LINC00879-204ENST00000466560 PIAS4Q8N2W9 510 aaPredicted RBP18.48■□□□□ 0.55
LINC00879-204ENST00000466560 MSH5O43196 834 aa18.22■□□□□ 0.51
LINC00879-204ENST00000466560 SCAF1Q9H7N4 1312 aaKnown RBP17.09■□□□□ 0.33
LINC00879-204ENST00000466560 PPP4R3CPQ6ZMV5 832 aa17.07■□□□□ 0.32
LINC00879-204ENST00000466560 POTEDQ86YR6 584 aa17.07■□□□□ 0.32
LINC00879-204ENST00000466560 MAPK8IP2Q13387 824 aaPredicted RBP17.04■□□□□ 0.32
LINC00879-204ENST00000466560 DMRT2Q9Y5R5 561 aa16.82■□□□□ 0.28
LINC00879-204ENST00000466560 CNKSR2Q8WXI2 1034 aa16.64■□□□□ 0.25
LINC00879-204ENST00000466560 NCBP3Q53F19 620 aaKnown RBP16.53■□□□□ 0.24
LINC00879-204ENST00000466560 KCNA4P22459 653 aa16.38■□□□□ 0.21
LINC00879-204ENST00000466560 HOXD11P31277 338 aaPredicted RBP16.38■□□□□ 0.21
LINC00879-204ENST00000466560 RNF216Q9NWF9 866 aaPredicted RBP16.37■□□□□ 0.21
LINC00879-204ENST00000466560 NPM3O75607 178 aaKnown RBP16.29■□□□□ 0.2
LINC00879-204ENST00000466560 DCAF8L1A6NGE4 600 aa16.16■□□□□ 0.18
LINC00879-204ENST00000466560 DNAJC5BQ9UF47 199 aa15.81■□□□□ 0.12
LINC00879-204ENST00000466560 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.63■□□□□ 0.09
LINC00879-204ENST00000466560 RNF39Q9H2S5 420 aa15.58■□□□□ 0.08
LINC00879-204ENST00000466560 SLC4A1APQ9BWU0 796 aaKnown RBP15.55■□□□□ 0.08
LINC00879-204ENST00000466560 SLC4A2P04920 1241 aa15.45■□□□□ 0.06
LINC00879-204ENST00000466560 CACNB1Q02641 598 aaPredicted RBP15.4■□□□□ 0.06
LINC00879-204ENST00000466560 C1QBPQ07021 282 aaKnown RBP15.37■□□□□ 0.05
LINC00879-204ENST00000466560 U3KPZ7 1027 aaPredicted RBP15.34■□□□□ 0.05
LINC00879-204ENST00000466560 FOXD4L1Q9NU39 408 aa15.15■□□□□ 0.02
LINC00879-204ENST00000466560 ZBTB22O15209 634 aa15.06■□□□□ 0
LINC00879-204ENST00000466560 MYCNP04198 464 aaPredicted RBP15.06■□□□□ 0
LINC00879-204ENST00000466560 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.04■□□□□ -0
LINC00879-204ENST00000466560 HNRNPUL2Q1KMD3 747 aaKnown RBP15.04■□□□□ -0
LINC00879-204ENST00000466560 SPINK5Q9NQ38 1064 aaPredicted RBP15□□□□□ -0.01
LINC00879-204ENST00000466560 SAMD1Q6SPF0 538 aaPredicted RBP14.98□□□□□ -0.01
LINC00879-204ENST00000466560 CAPN15O75808 1086 aa14.96□□□□□ -0.01
LINC00879-204ENST00000466560 APLP2Q06481 763 aa14.95□□□□□ -0.02
LINC00879-204ENST00000466560 TRHP20396 242 aaPredicted RBP14.83□□□□□ -0.04
LINC00879-204ENST00000466560 EHMT2Q96KQ7 1210 aa14.82□□□□□ -0.04
LINC00879-204ENST00000466560 ZNF219Q9P2Y4 722 aaPredicted RBP14.8□□□□□ -0.04
LINC00879-204ENST00000466560 CSRNP3Q8WYN3 585 aa14.75□□□□□ -0.05
LINC00879-204ENST00000466560 DSG3P32926 999 aa14.74□□□□□ -0.05
LINC00879-204ENST00000466560 ATF5Q9Y2D1 282 aaPredicted RBP14.69□□□□□ -0.06
LINC00879-204ENST00000466560 ABCB7O75027 752 aa14.66□□□□□ -0.06
LINC00879-204ENST00000466560 ATXN8OSP0DMR3 200 aa14.61□□□□□ -0.07
LINC00879-204ENST00000466560 POLA2Q14181 598 aa14.51□□□□□ -0.09
LINC00879-204ENST00000466560 ZBTB12Q9Y330 459 aaPredicted RBP14.24□□□□□ -0.13
LINC00879-204ENST00000466560 FBLN2P98095 1184 aa14.09□□□□□ -0.15
LINC00879-204ENST00000466560 RBM42Q9BTD8 480 aaKnown RBP14.06□□□□□ -0.16
LINC00879-204ENST00000466560 OSCARQ8IYS5 282 aa14.04□□□□□ -0.16
LINC00879-204ENST00000466560 MKRN4PQ13434 485 aaPredicted RBP14.03□□□□□ -0.16
LINC00879-204ENST00000466560 SPDYE2BA6NHP3 402 aa13.84□□□□□ -0.19
LINC00879-204ENST00000466560 SPDYE6P0CI01 402 aa13.84□□□□□ -0.19
LINC00879-204ENST00000466560 SPDYE2Q495Y8 402 aa13.84□□□□□ -0.19
LINC00879-204ENST00000466560 AKT1S1Q96B36 256 aa13.83□□□□□ -0.2
LINC00879-204ENST00000466560 ZNF692Q9BU19 519 aaPredicted RBP13.76□□□□□ -0.21
LINC00879-204ENST00000466560 REM2Q8IYK8 340 aaPredicted RBP13.7□□□□□ -0.22
LINC00879-204ENST00000466560 SSUH2Q9Y2M2 353 aa13.7□□□□□ -0.22
LINC00879-204ENST00000466560 SPDYE4A6NLX3 237 aa13.6□□□□□ -0.23
LINC00879-204ENST00000466560 CHRDL2Q6WN34 429 aa13.59□□□□□ -0.23
LINC00879-204ENST00000466560 PABPN1Q86U42 306 aaKnown RBP eCLIP13.57□□□□□ -0.24
LINC00879-204ENST00000466560 PITPNM1O00562 1244 aa13.56□□□□□ -0.24
LINC00879-204ENST00000466560 SPDYE1Q8NFV5 336 aaPredicted RBP13.5□□□□□ -0.25
LINC00879-204ENST00000466560 CLEC11AQ9Y240 323 aa13.48□□□□□ -0.25
LINC00879-204ENST00000466560 POTEHQ6S545 545 aa13.46□□□□□ -0.25
LINC00879-204ENST00000466560 FKBP8Q14318 412 aa13.38□□□□□ -0.27
LINC00879-204ENST00000466560 PIP4P2Q8N4L2 257 aa13.36□□□□□ -0.27
LINC00879-204ENST00000466560 FXR2P51116 673 aaKnown RBP eCLIP13.34□□□□□ -0.27
LINC00879-204ENST00000466560 PROM2Q8N271 834 aa13.31□□□□□ -0.28
LINC00879-204ENST00000466560 PRR29P0C7W0 189 aa13.3□□□□□ -0.28
LINC00879-204ENST00000466560 STAG3Q9UJ98 1225 aa13.28□□□□□ -0.28
LINC00879-204ENST00000466560 PRKAR2AP13861 404 aaKnown RBP13.22□□□□□ -0.29
LINC00879-204ENST00000466560 CHADLQ6NUI6 762 aa13.18□□□□□ -0.3
LINC00879-204ENST00000466560 CREBZFQ9NS37 354 aa13.06□□□□□ -0.32
LINC00879-204ENST00000466560 HAX1O00165 279 aa13.01□□□□□ -0.33
LINC00879-204ENST00000466560 FARP1Q9Y4F1 1045 aaPredicted RBP13□□□□□ -0.33
LINC00879-204ENST00000466560 FBXO3Q9UK99 471 aa12.94□□□□□ -0.34
LINC00879-204ENST00000466560 MIER1Q8N108 512 aa12.92□□□□□ -0.34
LINC00879-204ENST00000466560 C19orf67A6NJJ6 358 aa12.9□□□□□ -0.34
LINC00879-204ENST00000466560 PLCD3Q8N3E9 789 aa12.89□□□□□ -0.35
LINC00879-204ENST00000466560 PLEKHG5O94827 1062 aa12.88□□□□□ -0.35
LINC00879-204ENST00000466560 MNX1P50219 401 aaPredicted RBP12.88□□□□□ -0.35
LINC00879-204ENST00000466560 EVX2Q03828 476 aa12.88□□□□□ -0.35
LINC00879-204ENST00000466560 NPM1P06748 294 aaKnown RBP eCLIP12.84□□□□□ -0.35
LINC00879-204ENST00000466560 CD44P16070 742 aaKnown RBP12.83□□□□□ -0.36
LINC00879-204ENST00000466560 SP7Q8TDD2 431 aaPredicted RBP12.82□□□□□ -0.36
LINC00879-204ENST00000466560 VASPP50552 380 aaPredicted RBP12.79□□□□□ -0.36
LINC00879-204ENST00000466560 ZBTB47Q9UFB7 747 aaPredicted RBP12.73□□□□□ -0.37
LINC00879-204ENST00000466560 ZRANB1Q9UGI0 708 aa12.72□□□□□ -0.37
LINC00879-204ENST00000466560 PAK3O75914 559 aaPredicted RBP12.7□□□□□ -0.38
LINC00879-204ENST00000466560 KLHL34Q8N239 644 aa12.65□□□□□ -0.38
LINC00879-204ENST00000466560 ZNF579Q8NAF0 562 aaKnown RBP12.64□□□□□ -0.39
LINC00879-204ENST00000466560 TSPYL2Q9H2G4 693 aaPredicted RBP12.64□□□□□ -0.39
LINC00879-204ENST00000466560 RASEFQ8IZ41 740 aa12.63□□□□□ -0.39
LINC00879-204ENST00000466560 GABBR2O75899 941 aa12.61□□□□□ -0.39
LINC00879-204ENST00000466560 NUBP1P53384 320 aa12.61□□□□□ -0.39
LINC00879-204ENST00000466560 IFNLR1Q8IU57 520 aaPredicted RBP12.59□□□□□ -0.39
LINC00879-204ENST00000466560 PHF12Q96QT6 1004 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms