RNA–Protein interactions for RNA: ENST00000465741.1

SPTA1-203, Transcript of spectrin alpha, erythrocytic 1, humanhuman

TSL 3

Gene SPTA1, Length 718 nt, Biotype retained intron, Subcellular localisation Cytosol, Dendrite .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1-203ENST00000465741 AEBP2Q6ZN18 517 aaPredicted RBP30.81■■■□□ 2.52
SPTA1-203ENST00000465741 CHIC1Q5VXU3 224 aa28.88■■■□□ 2.21
SPTA1-203ENST00000465741 SENP3Q9H4L4 574 aaPredicted RBP26.15■■□□□ 1.78
SPTA1-203ENST00000465741 PHF23Q9BUL5 403 aaPredicted RBP25.83■■□□□ 1.73
SPTA1-203ENST00000465741 FOXD1Q16676 465 aa24.52■■□□□ 1.52
SPTA1-203ENST00000465741 POTEDQ86YR6 584 aa22.98■■□□□ 1.27
SPTA1-203ENST00000465741 MSH5O43196 834 aa22.92■■□□□ 1.26
SPTA1-203ENST00000465741 PLPPR3Q6T4P5 718 aa22.87■■□□□ 1.25
SPTA1-203ENST00000465741 PIAS4Q8N2W9 510 aaPredicted RBP22.76■■□□□ 1.23
SPTA1-203ENST00000465741 PPP6R1Q9UPN7 881 aa22.76■■□□□ 1.23
SPTA1-203ENST00000465741 ADRA2BP18089 450 aa22.63■■□□□ 1.21
SPTA1-203ENST00000465741 MAPK8IP2Q13387 824 aaPredicted RBP20.9■□□□□ 0.94
SPTA1-203ENST00000465741 DMRT2Q9Y5R5 561 aa20.74■□□□□ 0.91
SPTA1-203ENST00000465741 SCAF1Q9H7N4 1312 aaKnown RBP20.51■□□□□ 0.87
SPTA1-203ENST00000465741 PPP4R3CPQ6ZMV5 832 aa20.06■□□□□ 0.8
SPTA1-203ENST00000465741 HOXD11P31277 338 aaPredicted RBP19.88■□□□□ 0.77
SPTA1-203ENST00000465741 CACNB1Q02641 598 aaPredicted RBP19.86■□□□□ 0.77
SPTA1-203ENST00000465741 DCAF8L1A6NGE4 600 aa19.82■□□□□ 0.76
SPTA1-203ENST00000465741 CNKSR2Q8WXI2 1034 aa19.71■□□□□ 0.75
SPTA1-203ENST00000465741 RNF39Q9H2S5 420 aa19.62■□□□□ 0.73
SPTA1-203ENST00000465741 RNF216Q9NWF9 866 aaPredicted RBP19.61■□□□□ 0.73
SPTA1-203ENST00000465741 C1QBPQ07021 282 aaKnown RBP19.24■□□□□ 0.67
SPTA1-203ENST00000465741 DNAJC5BQ9UF47 199 aa19.19■□□□□ 0.66
SPTA1-203ENST00000465741 KCNA4P22459 653 aa19.1■□□□□ 0.65
SPTA1-203ENST00000465741 NCBP3Q53F19 620 aaKnown RBP19.08■□□□□ 0.64
SPTA1-203ENST00000465741 NPM3O75607 178 aaKnown RBP18.96■□□□□ 0.63
SPTA1-203ENST00000465741 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.85■□□□□ 0.61
SPTA1-203ENST00000465741 U3KPZ7 1027 aaPredicted RBP18.55■□□□□ 0.56
SPTA1-203ENST00000465741 SPINK5Q9NQ38 1064 aaPredicted RBP18.38■□□□□ 0.53
SPTA1-203ENST00000465741 SLC4A1APQ9BWU0 796 aaKnown RBP18.33■□□□□ 0.52
SPTA1-203ENST00000465741 DSG3P32926 999 aa18.29■□□□□ 0.52
SPTA1-203ENST00000465741 EHMT2Q96KQ7 1210 aa18.28■□□□□ 0.52
SPTA1-203ENST00000465741 CAPN15O75808 1086 aa18.24■□□□□ 0.51
SPTA1-203ENST00000465741 SLC4A2P04920 1241 aa18.24■□□□□ 0.51
SPTA1-203ENST00000465741 POTEHQ6S545 545 aa17.91■□□□□ 0.46
SPTA1-203ENST00000465741 TRHP20396 242 aaPredicted RBP17.9■□□□□ 0.46
SPTA1-203ENST00000465741 ABCB7O75027 752 aa17.87■□□□□ 0.45
SPTA1-203ENST00000465741 CSRNP3Q8WYN3 585 aa17.84■□□□□ 0.45
SPTA1-203ENST00000465741 ZNF219Q9P2Y4 722 aaPredicted RBP17.81■□□□□ 0.44
SPTA1-203ENST00000465741 APLP2Q06481 763 aa17.76■□□□□ 0.43
SPTA1-203ENST00000465741 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.72■□□□□ 0.43
SPTA1-203ENST00000465741 HNRNPUL2Q1KMD3 747 aaKnown RBP17.72■□□□□ 0.43
SPTA1-203ENST00000465741 SAMD1Q6SPF0 538 aaPredicted RBP17.65■□□□□ 0.42
SPTA1-203ENST00000465741 ZBTB22O15209 634 aa17.54■□□□□ 0.4
SPTA1-203ENST00000465741 FOXD4L1Q9NU39 408 aa17.53■□□□□ 0.4
SPTA1-203ENST00000465741 MYCNP04198 464 aaPredicted RBP17.46■□□□□ 0.39
SPTA1-203ENST00000465741 POLA2Q14181 598 aa17.37■□□□□ 0.37
SPTA1-203ENST00000465741 RBM42Q9BTD8 480 aaKnown RBP17.32■□□□□ 0.36
SPTA1-203ENST00000465741 ATF5Q9Y2D1 282 aaPredicted RBP17.24■□□□□ 0.35
SPTA1-203ENST00000465741 CHRDL2Q6WN34 429 aa17.14■□□□□ 0.33
SPTA1-203ENST00000465741 ATXN8OSP0DMR3 200 aa16.92■□□□□ 0.3
SPTA1-203ENST00000465741 AKT1S1Q96B36 256 aa16.92■□□□□ 0.3
SPTA1-203ENST00000465741 ZBTB12Q9Y330 459 aaPredicted RBP16.88■□□□□ 0.29
SPTA1-203ENST00000465741 OSCARQ8IYS5 282 aa16.87■□□□□ 0.29
SPTA1-203ENST00000465741 REM2Q8IYK8 340 aaPredicted RBP16.81■□□□□ 0.28
SPTA1-203ENST00000465741 PIP4P2Q8N4L2 257 aa16.71■□□□□ 0.27
SPTA1-203ENST00000465741 PITPNM1O00562 1244 aa16.66■□□□□ 0.26
SPTA1-203ENST00000465741 SP7Q8TDD2 431 aaPredicted RBP16.64■□□□□ 0.25
SPTA1-203ENST00000465741 FXR2P51116 673 aaKnown RBP eCLIP16.56■□□□□ 0.24
SPTA1-203ENST00000465741 MKRN4PQ13434 485 aaPredicted RBP16.42■□□□□ 0.22
SPTA1-203ENST00000465741 SPDYE2BA6NHP3 402 aa16.41■□□□□ 0.22
SPTA1-203ENST00000465741 SPDYE6P0CI01 402 aa16.41■□□□□ 0.22
SPTA1-203ENST00000465741 SPDYE2Q495Y8 402 aa16.41■□□□□ 0.22
SPTA1-203ENST00000465741 HAX1O00165 279 aa16.4■□□□□ 0.22
SPTA1-203ENST00000465741 FBLN2P98095 1184 aa16.36■□□□□ 0.21
SPTA1-203ENST00000465741 EVX2Q03828 476 aa16.35■□□□□ 0.21
SPTA1-203ENST00000465741 SSUH2Q9Y2M2 353 aa16.24■□□□□ 0.19
SPTA1-203ENST00000465741 PRKAR2AP13861 404 aaKnown RBP16.18■□□□□ 0.18
SPTA1-203ENST00000465741 CLEC11AQ9Y240 323 aa16.18■□□□□ 0.18
SPTA1-203ENST00000465741 SPDYE1Q8NFV5 336 aaPredicted RBP16.17■□□□□ 0.18
SPTA1-203ENST00000465741 ZNF692Q9BU19 519 aaPredicted RBP16.17■□□□□ 0.18
SPTA1-203ENST00000465741 FKBP8Q14318 412 aa16.15■□□□□ 0.18
SPTA1-203ENST00000465741 C19orf67A6NJJ6 358 aa16.04■□□□□ 0.16
SPTA1-203ENST00000465741 CHADLQ6NUI6 762 aa16■□□□□ 0.15
SPTA1-203ENST00000465741 PABPN1Q86U42 306 aaKnown RBP eCLIP15.95■□□□□ 0.14
SPTA1-203ENST00000465741 GABBR2O75899 941 aa15.87■□□□□ 0.13
SPTA1-203ENST00000465741 PRR29P0C7W0 189 aa15.85■□□□□ 0.13
SPTA1-203ENST00000465741 SPDYE4A6NLX3 237 aa15.73■□□□□ 0.11
SPTA1-203ENST00000465741 FARP1Q9Y4F1 1045 aaPredicted RBP15.68■□□□□ 0.1
SPTA1-203ENST00000465741 CD44P16070 742 aaKnown RBP15.64■□□□□ 0.09
SPTA1-203ENST00000465741 POTEIP0CG38 1075 aa15.62■□□□□ 0.09
SPTA1-203ENST00000465741 LHX8Q68G74 356 aa15.6■□□□□ 0.09
SPTA1-203ENST00000465741 AMER1Q5JTC6 1135 aaPredicted RBP15.56■□□□□ 0.08
SPTA1-203ENST00000465741 FBXO3Q9UK99 471 aa15.55■□□□□ 0.08
SPTA1-203ENST00000465741 PROM2Q8N271 834 aa15.51■□□□□ 0.07
SPTA1-203ENST00000465741 CREBZFQ9NS37 354 aa15.51■□□□□ 0.07
SPTA1-203ENST00000465741 ZNF579Q8NAF0 562 aaKnown RBP15.41■□□□□ 0.06
SPTA1-203ENST00000465741 RTN4Q9NQC3 1192 aaKnown RBP15.41■□□□□ 0.06
SPTA1-203ENST00000465741 CLCN6P51797 869 aa15.36■□□□□ 0.05
SPTA1-203ENST00000465741 ZRANB1Q9UGI0 708 aa15.36■□□□□ 0.05
SPTA1-203ENST00000465741 STAG3Q9UJ98 1225 aa15.35■□□□□ 0.05
SPTA1-203ENST00000465741 GALR2O43603 387 aaPredicted RBP15.28■□□□□ 0.04
SPTA1-203ENST00000465741 DCBLD2Q96PD2 775 aa15.28■□□□□ 0.04
SPTA1-203ENST00000465741 VASPP50552 380 aaPredicted RBP15.25■□□□□ 0.03
SPTA1-203ENST00000465741 MNX1P50219 401 aaPredicted RBP15.24■□□□□ 0.03
SPTA1-203ENST00000465741 PHF12Q96QT6 1004 aa15.2■□□□□ 0.02
SPTA1-203ENST00000465741 POTEB2H3BUK9 544 aa15.11■□□□□ 0.01
SPTA1-203ENST00000465741 PAK3O75914 559 aaPredicted RBP15.06■□□□□ 0
SPTA1-203ENST00000465741 NPM1P06748 294 aaKnown RBP eCLIP15.06■□□□□ 0
SPTA1-203ENST00000465741 PELP1Q8IZL8 1130 aaKnown RBP15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms