RNA–Protein interactions for RNA: ENST00000465563.5

SMC4-205, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 747 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-205ENST00000465563 AEBP2Q6ZN18 517 aaPredicted RBP35.26■■■■□ 3.24
SMC4-205ENST00000465563 CHIC1Q5VXU3 224 aa33.86■■■■□ 3.01
SMC4-205ENST00000465563 SENP3Q9H4L4 574 aaPredicted RBP30.08■■■□□ 2.41
SMC4-205ENST00000465563 PHF23Q9BUL5 403 aaPredicted RBP29.73■■■□□ 2.35
SMC4-205ENST00000465563 FOXD1Q16676 465 aa27.96■■■□□ 2.07
SMC4-205ENST00000465563 PLPPR3Q6T4P5 718 aa27.24■■□□□ 1.95
SMC4-205ENST00000465563 PPP6R1Q9UPN7 881 aa26.4■■□□□ 1.82
SMC4-205ENST00000465563 ADRA2BP18089 450 aa26.35■■□□□ 1.81
SMC4-205ENST00000465563 PIAS4Q8N2W9 510 aaPredicted RBP26.23■■□□□ 1.79
SMC4-205ENST00000465563 MSH5O43196 834 aa26.08■■□□□ 1.77
SMC4-205ENST00000465563 POTEDQ86YR6 584 aa24.81■■□□□ 1.56
SMC4-205ENST00000465563 SCAF1Q9H7N4 1312 aaKnown RBP24.18■■□□□ 1.46
SMC4-205ENST00000465563 MAPK8IP2Q13387 824 aaPredicted RBP24.09■■□□□ 1.45
SMC4-205ENST00000465563 PPP4R3CPQ6ZMV5 832 aa23.9■■□□□ 1.42
SMC4-205ENST00000465563 DMRT2Q9Y5R5 561 aa23.9■■□□□ 1.42
SMC4-205ENST00000465563 CNKSR2Q8WXI2 1034 aa23.39■■□□□ 1.33
SMC4-205ENST00000465563 HOXD11P31277 338 aaPredicted RBP23.15■■□□□ 1.3
SMC4-205ENST00000465563 NCBP3Q53F19 620 aaKnown RBP23.14■■□□□ 1.29
SMC4-205ENST00000465563 RNF216Q9NWF9 866 aaPredicted RBP23.09■■□□□ 1.29
SMC4-205ENST00000465563 DCAF8L1A6NGE4 600 aa22.92■■□□□ 1.26
SMC4-205ENST00000465563 NPM3O75607 178 aaKnown RBP22.75■■□□□ 1.23
SMC4-205ENST00000465563 KCNA4P22459 653 aa22.62■■□□□ 1.21
SMC4-205ENST00000465563 DNAJC5BQ9UF47 199 aa22.31■■□□□ 1.16
SMC4-205ENST00000465563 RNF39Q9H2S5 420 aa22.26■■□□□ 1.15
SMC4-205ENST00000465563 CACNB1Q02641 598 aaPredicted RBP22.16■■□□□ 1.14
SMC4-205ENST00000465563 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.09■■□□□ 1.137e-7■□□□□ 9.1
SMC4-205ENST00000465563 C1QBPQ07021 282 aaKnown RBP21.98■■□□□ 1.11
SMC4-205ENST00000465563 U3KPZ7 1027 aaPredicted RBP21.63■■□□□ 1.05
SMC4-205ENST00000465563 SLC4A2P04920 1241 aa21.62■■□□□ 1.05
SMC4-205ENST00000465563 SLC4A1APQ9BWU0 796 aaKnown RBP21.45■■□□□ 1.02
SMC4-205ENST00000465563 SPINK5Q9NQ38 1064 aaPredicted RBP21.21■□□□□ 0.99
SMC4-205ENST00000465563 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.2■□□□□ 0.98
SMC4-205ENST00000465563 HNRNPUL2Q1KMD3 747 aaKnown RBP21.2■□□□□ 0.98
SMC4-205ENST00000465563 CAPN15O75808 1086 aa21.19■□□□□ 0.98
SMC4-205ENST00000465563 APLP2Q06481 763 aa21.14■□□□□ 0.97
SMC4-205ENST00000465563 SAMD1Q6SPF0 538 aaPredicted RBP21.08■□□□□ 0.97
SMC4-205ENST00000465563 MYCNP04198 464 aaPredicted RBP21.06■□□□□ 0.96
SMC4-205ENST00000465563 FOXD4L1Q9NU39 408 aa21.02■□□□□ 0.96
SMC4-205ENST00000465563 DSG3P32926 999 aa20.96■□□□□ 0.95
SMC4-205ENST00000465563 TRHP20396 242 aaPredicted RBP20.93■□□□□ 0.94
SMC4-205ENST00000465563 ZNF219Q9P2Y4 722 aaPredicted RBP20.92■□□□□ 0.94
SMC4-205ENST00000465563 ZBTB22O15209 634 aa20.77■□□□□ 0.92
SMC4-205ENST00000465563 ABCB7O75027 752 aa20.7■□□□□ 0.9
SMC4-205ENST00000465563 ATF5Q9Y2D1 282 aaPredicted RBP20.5■□□□□ 0.87
SMC4-205ENST00000465563 POLA2Q14181 598 aa20.45■□□□□ 0.86
SMC4-205ENST00000465563 ATXN8OSP0DMR3 200 aa20.36■□□□□ 0.85
SMC4-205ENST00000465563 CSRNP3Q8WYN3 585 aa20.16■□□□□ 0.82
SMC4-205ENST00000465563 EHMT2Q96KQ7 1210 aa20.1■□□□□ 0.81
SMC4-205ENST00000465563 ZBTB12Q9Y330 459 aaPredicted RBP20.1■□□□□ 0.81
SMC4-205ENST00000465563 RBM42Q9BTD8 480 aaKnown RBP20.03■□□□□ 0.8
SMC4-205ENST00000465563 OSCARQ8IYS5 282 aa19.76■□□□□ 0.75
SMC4-205ENST00000465563 FBLN2P98095 1184 aa19.75■□□□□ 0.75
SMC4-205ENST00000465563 AKT1S1Q96B36 256 aa19.63■□□□□ 0.73
SMC4-205ENST00000465563 MKRN4PQ13434 485 aaPredicted RBP19.58■□□□□ 0.72
SMC4-205ENST00000465563 POTEHQ6S545 545 aa19.54■□□□□ 0.72
SMC4-205ENST00000465563 SPDYE2BA6NHP3 402 aa19.48■□□□□ 0.71
SMC4-205ENST00000465563 SPDYE6P0CI01 402 aa19.48■□□□□ 0.71
SMC4-205ENST00000465563 SPDYE2Q495Y8 402 aa19.48■□□□□ 0.71
SMC4-205ENST00000465563 REM2Q8IYK8 340 aaPredicted RBP19.44■□□□□ 0.7
SMC4-205ENST00000465563 CHRDL2Q6WN34 429 aa19.43■□□□□ 0.7
SMC4-205ENST00000465563 ZNF692Q9BU19 519 aaPredicted RBP19.31■□□□□ 0.68
SMC4-205ENST00000465563 SSUH2Q9Y2M2 353 aa19.24■□□□□ 0.67
SMC4-205ENST00000465563 PITPNM1O00562 1244 aa19.21■□□□□ 0.67
SMC4-205ENST00000465563 SPDYE1Q8NFV5 336 aaPredicted RBP19.07■□□□□ 0.64
SMC4-205ENST00000465563 PABPN1Q86U42 306 aaKnown RBP eCLIP19.03■□□□□ 0.64
SMC4-205ENST00000465563 PIP4P2Q8N4L2 257 aa19.03■□□□□ 0.64
SMC4-205ENST00000465563 CLEC11AQ9Y240 323 aa19■□□□□ 0.63
SMC4-205ENST00000465563 FXR2P51116 673 aaKnown RBP eCLIP18.98■□□□□ 0.63
SMC4-205ENST00000465563 SPDYE4A6NLX3 237 aa18.88■□□□□ 0.61
SMC4-205ENST00000465563 PRR29P0C7W0 189 aa18.75■□□□□ 0.59
SMC4-205ENST00000465563 PRKAR2AP13861 404 aaKnown RBP18.73■□□□□ 0.59
SMC4-205ENST00000465563 HAX1O00165 279 aa18.62■□□□□ 0.57
SMC4-205ENST00000465563 STAG3Q9UJ98 1225 aa18.61■□□□□ 0.57
SMC4-205ENST00000465563 CHADLQ6NUI6 762 aa18.58■□□□□ 0.56
SMC4-205ENST00000465563 SP7Q8TDD2 431 aaPredicted RBP18.48■□□□□ 0.55
SMC4-205ENST00000465563 PROM2Q8N271 834 aa18.44■□□□□ 0.54
SMC4-205ENST00000465563 EVX2Q03828 476 aa18.36■□□□□ 0.53
SMC4-205ENST00000465563 FARP1Q9Y4F1 1045 aaPredicted RBP18.36■□□□□ 0.53
SMC4-205ENST00000465563 C19orf67A6NJJ6 358 aa18.35■□□□□ 0.53
SMC4-205ENST00000465563 CREBZFQ9NS37 354 aa18.33■□□□□ 0.52
SMC4-205ENST00000465563 FKBP8Q14318 412 aa18.29■□□□□ 0.52
SMC4-205ENST00000465563 CD44P16070 742 aaKnown RBP18.16■□□□□ 0.5
SMC4-205ENST00000465563 NPM1P06748 294 aaKnown RBP eCLIP18.06■□□□□ 0.48
SMC4-205ENST00000465563 MNX1P50219 401 aaPredicted RBP18.05■□□□□ 0.48
SMC4-205ENST00000465563 GABBR2O75899 941 aa18■□□□□ 0.47
SMC4-205ENST00000465563 MIER1Q8N108 512 aa17.99■□□□□ 0.47
SMC4-205ENST00000465563 PLEKHG5O94827 1062 aa17.98■□□□□ 0.47
SMC4-205ENST00000465563 ZRANB1Q9UGI0 708 aa17.97■□□□□ 0.47
SMC4-205ENST00000465563 PAK3O75914 559 aaPredicted RBP17.93■□□□□ 0.46
SMC4-205ENST00000465563 CLCN6P51797 869 aa17.89■□□□□ 0.45
SMC4-205ENST00000465563 PLCD3Q8N3E9 789 aa17.89■□□□□ 0.45
SMC4-205ENST00000465563 ZNF579Q8NAF0 562 aaKnown RBP17.89■□□□□ 0.45
SMC4-205ENST00000465563 FBXO3Q9UK99 471 aa17.85■□□□□ 0.45
SMC4-205ENST00000465563 ZBTB47Q9UFB7 747 aaPredicted RBP17.75■□□□□ 0.43
SMC4-205ENST00000465563 PHF12Q96QT6 1004 aa17.72■□□□□ 0.43
SMC4-205ENST00000465563 TSPYL2Q9H2G4 693 aaPredicted RBP17.72■□□□□ 0.43
SMC4-205ENST00000465563 GALR2O43603 387 aaPredicted RBP17.64■□□□□ 0.41
SMC4-205ENST00000465563 RASEFQ8IZ41 740 aa17.63■□□□□ 0.41
SMC4-205ENST00000465563 DCBLD2Q96PD2 775 aa17.62■□□□□ 0.41
SMC4-205ENST00000465563 POTEIP0CG38 1075 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms