RNA–Protein interactions for RNA: ENST00000465043.1

SCN3A-206, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 4

Gene SCN3A, Length 531 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-206ENST00000465043 AEBP2Q6ZN18 517 aaPredicted RBP20.38■□□□□ 0.85
SCN3A-206ENST00000465043 CHIC1Q5VXU3 224 aa19.68■□□□□ 0.74
SCN3A-206ENST00000465043 SENP3Q9H4L4 574 aaPredicted RBP17.52■□□□□ 0.4
SCN3A-206ENST00000465043 PHF23Q9BUL5 403 aaPredicted RBP17.24■□□□□ 0.35
SCN3A-206ENST00000465043 FOXD1Q16676 465 aa16.19■□□□□ 0.18
SCN3A-206ENST00000465043 PLPPR3Q6T4P5 718 aa15.89■□□□□ 0.13
SCN3A-206ENST00000465043 POTEDQ86YR6 584 aa15.51■□□□□ 0.07
SCN3A-206ENST00000465043 PPP6R1Q9UPN7 881 aa15.24■□□□□ 0.03
SCN3A-206ENST00000465043 ADRA2BP18089 450 aa15.23■□□□□ 0.03
SCN3A-206ENST00000465043 PIAS4Q8N2W9 510 aaPredicted RBP15.22■□□□□ 0.03
SCN3A-206ENST00000465043 MSH5O43196 834 aa15.2■□□□□ 0.02
SCN3A-206ENST00000465043 SCAF1Q9H7N4 1312 aaKnown RBP14.15□□□□□ -0.14
SCN3A-206ENST00000465043 MAPK8IP2Q13387 824 aaPredicted RBP13.89□□□□□ -0.19
SCN3A-206ENST00000465043 PPP4R3CPQ6ZMV5 832 aa13.89□□□□□ -0.19
SCN3A-206ENST00000465043 DMRT2Q9Y5R5 561 aa13.89□□□□□ -0.19
SCN3A-206ENST00000465043 CNKSR2Q8WXI2 1034 aa13.64□□□□□ -0.23
SCN3A-206ENST00000465043 NCBP3Q53F19 620 aaKnown RBP13.54□□□□□ -0.24
SCN3A-206ENST00000465043 HOXD11P31277 338 aaPredicted RBP13.47□□□□□ -0.25
SCN3A-206ENST00000465043 RNF216Q9NWF9 866 aaPredicted RBP13.45□□□□□ -0.26
SCN3A-206ENST00000465043 DCAF8L1A6NGE4 600 aa13.27□□□□□ -0.29
SCN3A-206ENST00000465043 CACNB1Q02641 598 aaPredicted RBP13.23□□□□□ -0.29
SCN3A-206ENST00000465043 NPM3O75607 178 aaKnown RBP13.2□□□□□ -0.3
SCN3A-206ENST00000465043 KCNA4P22459 653 aa13.12□□□□□ -0.31
SCN3A-206ENST00000465043 DNAJC5BQ9UF47 199 aa13.08□□□□□ -0.32
SCN3A-206ENST00000465043 RNF39Q9H2S5 420 aa12.92□□□□□ -0.34
SCN3A-206ENST00000465043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.85□□□□□ -0.35
SCN3A-206ENST00000465043 C1QBPQ07021 282 aaKnown RBP12.81□□□□□ -0.36
SCN3A-206ENST00000465043 U3KPZ7 1027 aaPredicted RBP12.54□□□□□ -0.4
SCN3A-206ENST00000465043 SLC4A2P04920 1241 aa12.52□□□□□ -0.41
SCN3A-206ENST00000465043 SLC4A1APQ9BWU0 796 aaKnown RBP12.5□□□□□ -0.41
SCN3A-206ENST00000465043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.44□□□□□ -0.42
SCN3A-206ENST00000465043 HNRNPUL2Q1KMD3 747 aaKnown RBP12.44□□□□□ -0.42
SCN3A-206ENST00000465043 APLP2Q06481 763 aa12.43□□□□□ -0.42
SCN3A-206ENST00000465043 SAMD1Q6SPF0 538 aaPredicted RBP12.34□□□□□ -0.43
SCN3A-206ENST00000465043 CAPN15O75808 1086 aa12.29□□□□□ -0.44
SCN3A-206ENST00000465043 MYCNP04198 464 aaPredicted RBP12.29□□□□□ -0.44
SCN3A-206ENST00000465043 FOXD4L1Q9NU39 408 aa12.26□□□□□ -0.45
SCN3A-206ENST00000465043 SPINK5Q9NQ38 1064 aaPredicted RBP12.25□□□□□ -0.45
SCN3A-206ENST00000465043 ZNF219Q9P2Y4 722 aaPredicted RBP12.22□□□□□ -0.45
SCN3A-206ENST00000465043 DSG3P32926 999 aa12.15□□□□□ -0.46
SCN3A-206ENST00000465043 TRHP20396 242 aaPredicted RBP12.12□□□□□ -0.47
SCN3A-206ENST00000465043 POTEHQ6S545 545 aa12.07□□□□□ -0.48
SCN3A-206ENST00000465043 ZBTB22O15209 634 aa12.02□□□□□ -0.49
SCN3A-206ENST00000465043 ABCB7O75027 752 aa11.96□□□□□ -0.49
SCN3A-206ENST00000465043 ATXN8OSP0DMR3 200 aa11.94□□□□□ -0.5
SCN3A-206ENST00000465043 POLA2Q14181 598 aa11.86□□□□□ -0.51
SCN3A-206ENST00000465043 ATF5Q9Y2D1 282 aaPredicted RBP11.83□□□□□ -0.52
SCN3A-206ENST00000465043 ZBTB12Q9Y330 459 aaPredicted RBP11.79□□□□□ -0.52
SCN3A-206ENST00000465043 RBM42Q9BTD8 480 aaKnown RBP11.72□□□□□ -0.53
SCN3A-206ENST00000465043 CSRNP3Q8WYN3 585 aa11.7□□□□□ -0.54
SCN3A-206ENST00000465043 EHMT2Q96KQ7 1210 aa11.67□□□□□ -0.54
SCN3A-206ENST00000465043 FBLN2P98095 1184 aa11.55□□□□□ -0.56
SCN3A-206ENST00000465043 OSCARQ8IYS5 282 aa11.45□□□□□ -0.58
SCN3A-206ENST00000465043 AKT1S1Q96B36 256 aa11.45□□□□□ -0.58
SCN3A-206ENST00000465043 SPDYE2BA6NHP3 402 aa11.38□□□□□ -0.59
SCN3A-206ENST00000465043 SPDYE6P0CI01 402 aa11.38□□□□□ -0.59
SCN3A-206ENST00000465043 SPDYE2Q495Y8 402 aa11.38□□□□□ -0.59
SCN3A-206ENST00000465043 MKRN4PQ13434 485 aaPredicted RBP11.33□□□□□ -0.6
SCN3A-206ENST00000465043 CHRDL2Q6WN34 429 aa11.28□□□□□ -0.6
SCN3A-206ENST00000465043 REM2Q8IYK8 340 aaPredicted RBP11.28□□□□□ -0.6
SCN3A-206ENST00000465043 ZNF692Q9BU19 519 aaPredicted RBP11.23□□□□□ -0.61
SCN3A-206ENST00000465043 SSUH2Q9Y2M2 353 aa11.2□□□□□ -0.62
SCN3A-206ENST00000465043 PITPNM1O00562 1244 aa11.13□□□□□ -0.63
SCN3A-206ENST00000465043 SPDYE1Q8NFV5 336 aaPredicted RBP11.13□□□□□ -0.63
SCN3A-206ENST00000465043 SP7Q8TDD2 431 aaPredicted RBP11.09□□□□□ -0.63
SCN3A-206ENST00000465043 PABPN1Q86U42 306 aaKnown RBP eCLIP11.05□□□□□ -0.64
SCN3A-206ENST00000465043 FXR2P51116 673 aaKnown RBP eCLIP11.02□□□□□ -0.65
SCN3A-206ENST00000465043 PIP4P2Q8N4L2 257 aa11.02□□□□□ -0.65
SCN3A-206ENST00000465043 CLEC11AQ9Y240 323 aa11.01□□□□□ -0.65
SCN3A-206ENST00000465043 SPDYE4A6NLX3 237 aa10.99□□□□□ -0.65
SCN3A-206ENST00000465043 STAG3Q9UJ98 1225 aa10.92□□□□□ -0.66
SCN3A-206ENST00000465043 PRR29P0C7W0 189 aa10.91□□□□□ -0.66
SCN3A-206ENST00000465043 PRKAR2AP13861 404 aaKnown RBP10.87□□□□□ -0.67
SCN3A-206ENST00000465043 HAX1O00165 279 aa10.81□□□□□ -0.68
SCN3A-206ENST00000465043 PROM2Q8N271 834 aa10.77□□□□□ -0.69
SCN3A-206ENST00000465043 CHADLQ6NUI6 762 aa10.72□□□□□ -0.69
SCN3A-206ENST00000465043 FARP1Q9Y4F1 1045 aaPredicted RBP10.67□□□□□ -0.7
SCN3A-206ENST00000465043 C19orf67A6NJJ6 358 aa10.66□□□□□ -0.7
SCN3A-206ENST00000465043 FKBP8Q14318 412 aa10.63□□□□□ -0.71
SCN3A-206ENST00000465043 CREBZFQ9NS37 354 aa10.63□□□□□ -0.71
SCN3A-206ENST00000465043 EVX2Q03828 476 aa10.58□□□□□ -0.72
SCN3A-206ENST00000465043 NPM1P06748 294 aaKnown RBP eCLIP10.57□□□□□ -0.72
SCN3A-206ENST00000465043 PLEKHG5O94827 1062 aa10.56□□□□□ -0.72
SCN3A-206ENST00000465043 CD44P16070 742 aaKnown RBP10.55□□□□□ -0.72
SCN3A-206ENST00000465043 CLCN6P51797 869 aa10.53□□□□□ -0.72
SCN3A-206ENST00000465043 PAK3O75914 559 aaPredicted RBP10.5□□□□□ -0.73
SCN3A-206ENST00000465043 FBXO3Q9UK99 471 aa10.49□□□□□ -0.73
SCN3A-206ENST00000465043 MIER1Q8N108 512 aa10.47□□□□□ -0.73
SCN3A-206ENST00000465043 MNX1P50219 401 aaPredicted RBP10.46□□□□□ -0.73
SCN3A-206ENST00000465043 PLCD3Q8N3E9 789 aa10.44□□□□□ -0.74
SCN3A-206ENST00000465043 ZBTB47Q9UFB7 747 aaPredicted RBP10.44□□□□□ -0.74
SCN3A-206ENST00000465043 ZRANB1Q9UGI0 708 aa10.43□□□□□ -0.74
SCN3A-206ENST00000465043 GABBR2O75899 941 aa10.42□□□□□ -0.74
SCN3A-206ENST00000465043 ZNF579Q8NAF0 562 aaKnown RBP10.42□□□□□ -0.74
SCN3A-206ENST00000465043 LHX8Q68G74 356 aa10.4□□□□□ -0.74
SCN3A-206ENST00000465043 VASPP50552 380 aaPredicted RBP10.27□□□□□ -0.77
SCN3A-206ENST00000465043 DCBLD2Q96PD2 775 aa10.26□□□□□ -0.77
SCN3A-206ENST00000465043 TSPYL2Q9H2G4 693 aaPredicted RBP10.26□□□□□ -0.77
SCN3A-206ENST00000465043 PHF12Q96QT6 1004 aa10.25□□□□□ -0.77
SCN3A-206ENST00000465043 CCDC61Q9Y6R9 512 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms