RNA–Protein interactions for RNA: ENST00000464940.1

KPNA1-202, Transcript of karyopherin subunit alpha 1, humanhuman

TSL 4

Gene KPNA1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KPNA1-202ENST00000464940 AEBP2Q6ZN18 517 aaPredicted RBP30.3■■■□□ 2.44
KPNA1-202ENST00000464940 CHIC1Q5VXU3 224 aa28.52■■■□□ 2.16
KPNA1-202ENST00000464940 SENP3Q9H4L4 574 aaPredicted RBP25.95■■□□□ 1.74
KPNA1-202ENST00000464940 PHF23Q9BUL5 403 aaPredicted RBP25.54■■□□□ 1.68
KPNA1-202ENST00000464940 FOXD1Q16676 465 aa24.18■■□□□ 1.46
KPNA1-202ENST00000464940 MSH5O43196 834 aa22.78■■□□□ 1.24
KPNA1-202ENST00000464940 POTEDQ86YR6 584 aa22.69■■□□□ 1.22
KPNA1-202ENST00000464940 PLPPR3Q6T4P5 718 aa22.68■■□□□ 1.22
KPNA1-202ENST00000464940 PIAS4Q8N2W9 510 aaPredicted RBP22.55■■□□□ 1.2
KPNA1-202ENST00000464940 PPP6R1Q9UPN7 881 aa22.37■■□□□ 1.17
KPNA1-202ENST00000464940 ADRA2BP18089 450 aa22.29■■□□□ 1.16
KPNA1-202ENST00000464940 MAPK8IP2Q13387 824 aaPredicted RBP20.55■□□□□ 0.88
KPNA1-202ENST00000464940 DMRT2Q9Y5R5 561 aa20.52■□□□□ 0.88
KPNA1-202ENST00000464940 SCAF1Q9H7N4 1312 aaKnown RBP20.46■□□□□ 0.87
KPNA1-202ENST00000464940 PPP4R3CPQ6ZMV5 832 aa19.83■□□□□ 0.77
KPNA1-202ENST00000464940 CACNB1Q02641 598 aaPredicted RBP19.71■□□□□ 0.75
KPNA1-202ENST00000464940 DCAF8L1A6NGE4 600 aa19.68■□□□□ 0.74
KPNA1-202ENST00000464940 HOXD11P31277 338 aaPredicted RBP19.65■□□□□ 0.74
KPNA1-202ENST00000464940 CNKSR2Q8WXI2 1034 aa19.54■□□□□ 0.72
KPNA1-202ENST00000464940 RNF216Q9NWF9 866 aaPredicted RBP19.43■□□□□ 0.7
KPNA1-202ENST00000464940 RNF39Q9H2S5 420 aa19.4■□□□□ 0.7
KPNA1-202ENST00000464940 C1QBPQ07021 282 aaKnown RBP19.12■□□□□ 0.65
KPNA1-202ENST00000464940 DNAJC5BQ9UF47 199 aa19.07■□□□□ 0.64
KPNA1-202ENST00000464940 NCBP3Q53F19 620 aaKnown RBP19.01■□□□□ 0.63
KPNA1-202ENST00000464940 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.73■□□□□ 0.595e-6■■■□□ 18.6
KPNA1-202ENST00000464940 NPM3O75607 178 aaKnown RBP18.7■□□□□ 0.58
KPNA1-202ENST00000464940 U3KPZ7 1027 aaPredicted RBP18.28■□□□□ 0.52
KPNA1-202ENST00000464940 CAPN15O75808 1086 aa18.1■□□□□ 0.49
KPNA1-202ENST00000464940 SPINK5Q9NQ38 1064 aaPredicted RBP18.1■□□□□ 0.49
KPNA1-202ENST00000464940 KCNA4P22459 653 aa18.07■□□□□ 0.48
KPNA1-202ENST00000464940 DSG3P32926 999 aa18.06■□□□□ 0.48
KPNA1-202ENST00000464940 SLC4A2P04920 1241 aa17.92■□□□□ 0.46
KPNA1-202ENST00000464940 APLP2Q06481 763 aa17.81■□□□□ 0.44
KPNA1-202ENST00000464940 TRHP20396 242 aaPredicted RBP17.74■□□□□ 0.43
KPNA1-202ENST00000464940 POTEHQ6S545 545 aa17.74■□□□□ 0.43
KPNA1-202ENST00000464940 ZNF219Q9P2Y4 722 aaPredicted RBP17.72■□□□□ 0.43
KPNA1-202ENST00000464940 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.71■□□□□ 0.43
KPNA1-202ENST00000464940 HNRNPUL2Q1KMD3 747 aaKnown RBP17.71■□□□□ 0.43
KPNA1-202ENST00000464940 ABCB7O75027 752 aa17.64■□□□□ 0.41
KPNA1-202ENST00000464940 SAMD1Q6SPF0 538 aaPredicted RBP17.58■□□□□ 0.4
KPNA1-202ENST00000464940 MYCNP04198 464 aaPredicted RBP17.33■□□□□ 0.36
KPNA1-202ENST00000464940 RBM42Q9BTD8 480 aaKnown RBP17.28■□□□□ 0.36
KPNA1-202ENST00000464940 POLA2Q14181 598 aa17.2■□□□□ 0.34
KPNA1-202ENST00000464940 SLC4A1APQ9BWU0 796 aaKnown RBP17.02■□□□□ 0.32
KPNA1-202ENST00000464940 CHRDL2Q6WN34 429 aa16.98■□□□□ 0.31
KPNA1-202ENST00000464940 FOXD4L1Q9NU39 408 aa16.98■□□□□ 0.31
KPNA1-202ENST00000464940 ATF5Q9Y2D1 282 aaPredicted RBP16.9■□□□□ 0.3
KPNA1-202ENST00000464940 ZBTB12Q9Y330 459 aaPredicted RBP16.86■□□□□ 0.29
KPNA1-202ENST00000464940 AKT1S1Q96B36 256 aa16.81■□□□□ 0.28
KPNA1-202ENST00000464940 OSCARQ8IYS5 282 aa16.65■□□□□ 0.26
KPNA1-202ENST00000464940 REM2Q8IYK8 340 aaPredicted RBP16.63■□□□□ 0.25
KPNA1-202ENST00000464940 ZBTB22O15209 634 aa16.59■□□□□ 0.25
KPNA1-202ENST00000464940 ATXN8OSP0DMR3 200 aa16.51■□□□□ 0.23
KPNA1-202ENST00000464940 PIP4P2Q8N4L2 257 aa16.51■□□□□ 0.23
KPNA1-202ENST00000464940 SP7Q8TDD2 431 aaPredicted RBP16.5■□□□□ 0.23
KPNA1-202ENST00000464940 EHMT2Q96KQ7 1210 aa16.5■□□□□ 0.23
KPNA1-202ENST00000464940 PITPNM1O00562 1244 aa16.45■□□□□ 0.22
KPNA1-202ENST00000464940 CSRNP3Q8WYN3 585 aa16.4■□□□□ 0.22
KPNA1-202ENST00000464940 FXR2P51116 673 aaKnown RBP eCLIP16.37■□□□□ 0.21
KPNA1-202ENST00000464940 SPDYE2BA6NHP3 402 aa16.31■□□□□ 0.2
KPNA1-202ENST00000464940 SPDYE6P0CI01 402 aa16.31■□□□□ 0.2
KPNA1-202ENST00000464940 FBLN2P98095 1184 aa16.31■□□□□ 0.2
KPNA1-202ENST00000464940 SPDYE2Q495Y8 402 aa16.31■□□□□ 0.2
KPNA1-202ENST00000464940 HAX1O00165 279 aa16.3■□□□□ 0.2
KPNA1-202ENST00000464940 MKRN4PQ13434 485 aaPredicted RBP16.12■□□□□ 0.17
KPNA1-202ENST00000464940 SPDYE1Q8NFV5 336 aaPredicted RBP16.09■□□□□ 0.17
KPNA1-202ENST00000464940 CLEC11AQ9Y240 323 aa16.07■□□□□ 0.16
KPNA1-202ENST00000464940 ZNF692Q9BU19 519 aaPredicted RBP16.05■□□□□ 0.16
KPNA1-202ENST00000464940 EVX2Q03828 476 aa16.04■□□□□ 0.16
KPNA1-202ENST00000464940 SSUH2Q9Y2M2 353 aa16.04■□□□□ 0.16
KPNA1-202ENST00000464940 PRKAR2AP13861 404 aaKnown RBP16.03■□□□□ 0.16
KPNA1-202ENST00000464940 C19orf67A6NJJ6 358 aa15.86■□□□□ 0.13
KPNA1-202ENST00000464940 PABPN1Q86U42 306 aaKnown RBP eCLIP15.8■□□□□ 0.12
KPNA1-202ENST00000464940 PRR29P0C7W0 189 aa15.77■□□□□ 0.12
KPNA1-202ENST00000464940 CHADLQ6NUI6 762 aa15.77■□□□□ 0.12
KPNA1-202ENST00000464940 GABBR2O75899 941 aa15.69■□□□□ 0.1
KPNA1-202ENST00000464940 FARP1Q9Y4F1 1045 aaPredicted RBP15.53■□□□□ 0.08
KPNA1-202ENST00000464940 CD44P16070 742 aaKnown RBP15.51■□□□□ 0.07
KPNA1-202ENST00000464940 LHX8Q68G74 356 aa15.47■□□□□ 0.07
KPNA1-202ENST00000464940 CLCN6P51797 869 aa15.41■□□□□ 0.06
KPNA1-202ENST00000464940 POTEIP0CG38 1075 aa15.34■□□□□ 0.05
KPNA1-202ENST00000464940 STAG3Q9UJ98 1225 aa15.34■□□□□ 0.05
KPNA1-202ENST00000464940 CREBZFQ9NS37 354 aa15.29■□□□□ 0.04
KPNA1-202ENST00000464940 ZNF579Q8NAF0 562 aaKnown RBP15.26■□□□□ 0.03
KPNA1-202ENST00000464940 ZRANB1Q9UGI0 708 aa15.24■□□□□ 0.03
KPNA1-202ENST00000464940 SPDYE4A6NLX3 237 aa15.23■□□□□ 0.03
KPNA1-202ENST00000464940 DCBLD2Q96PD2 775 aa15.23■□□□□ 0.03
KPNA1-202ENST00000464940 PAK3O75914 559 aaPredicted RBP15.08■□□□□ 0
KPNA1-202ENST00000464940 GALR2O43603 387 aaPredicted RBP15.07■□□□□ 0
KPNA1-202ENST00000464940 NPM1P06748 294 aaKnown RBP eCLIP15.04■□□□□ -0
KPNA1-202ENST00000464940 MNX1P50219 401 aaPredicted RBP14.99□□□□□ -0.01
KPNA1-202ENST00000464940 PHF12Q96QT6 1004 aa14.98□□□□□ -0.01
KPNA1-202ENST00000464940 OTUD5Q96G74 571 aa14.84□□□□□ -0.03
KPNA1-202ENST00000464940 POTEB2H3BUK9 544 aa14.83□□□□□ -0.04
KPNA1-202ENST00000464940 PROM2Q8N271 834 aa14.82□□□□□ -0.04
KPNA1-202ENST00000464940 PELP1Q8IZL8 1130 aaKnown RBP14.8□□□□□ -0.04
KPNA1-202ENST00000464940 MS4A3Q96HJ5 214 aa14.78□□□□□ -0.04
KPNA1-202ENST00000464940 FKBP8Q14318 412 aa14.77□□□□□ -0.05
KPNA1-202ENST00000464940 ASTLQ6HA08 431 aaPredicted RBP14.76□□□□□ -0.05
KPNA1-202ENST00000464940 TSPYL2Q9H2G4 693 aaPredicted RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms