RNA–Protein interactions for RNA: ENST00000464435.1

USP25-207, Transcript of ubiquitin specific peptidase 25, humanhuman

TSL 3

Gene USP25, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP25-207ENST00000464435 AEBP2Q6ZN18 517 aaPredicted RBP27.41■■□□□ 1.98
USP25-207ENST00000464435 CHIC1Q5VXU3 224 aa25.71■■□□□ 1.71
USP25-207ENST00000464435 SENP3Q9H4L4 574 aaPredicted RBP23.36■■□□□ 1.33
USP25-207ENST00000464435 PHF23Q9BUL5 403 aaPredicted RBP23.05■■□□□ 1.28
USP25-207ENST00000464435 FOXD1Q16676 465 aa21.86■■□□□ 1.09
USP25-207ENST00000464435 POTEDQ86YR6 584 aa20.73■□□□□ 0.91
USP25-207ENST00000464435 MSH5O43196 834 aa20.51■□□□□ 0.87
USP25-207ENST00000464435 PLPPR3Q6T4P5 718 aa20.4■□□□□ 0.86
USP25-207ENST00000464435 PIAS4Q8N2W9 510 aaPredicted RBP20.33■□□□□ 0.85
USP25-207ENST00000464435 PPP6R1Q9UPN7 881 aa20.24■□□□□ 0.83
USP25-207ENST00000464435 ADRA2BP18089 450 aa20.15■□□□□ 0.82
USP25-207ENST00000464435 MAPK8IP2Q13387 824 aaPredicted RBP18.61■□□□□ 0.57
USP25-207ENST00000464435 DMRT2Q9Y5R5 561 aa18.5■□□□□ 0.55
USP25-207ENST00000464435 SCAF1Q9H7N4 1312 aaKnown RBP18.36■□□□□ 0.53
USP25-207ENST00000464435 PPP4R3CPQ6ZMV5 832 aa17.88■□□□□ 0.45
USP25-207ENST00000464435 CACNB1Q02641 598 aaPredicted RBP17.82■□□□□ 0.44
USP25-207ENST00000464435 DCAF8L1A6NGE4 600 aa17.76■□□□□ 0.43
USP25-207ENST00000464435 HOXD11P31277 338 aaPredicted RBP17.7■□□□□ 0.42
USP25-207ENST00000464435 CNKSR2Q8WXI2 1034 aa17.57■□□□□ 0.4
USP25-207ENST00000464435 RNF39Q9H2S5 420 aa17.5■□□□□ 0.39
USP25-207ENST00000464435 RNF216Q9NWF9 866 aaPredicted RBP17.49■□□□□ 0.39
USP25-207ENST00000464435 NCBP3Q53F19 620 aaKnown RBP17.44■□□□□ 0.38
USP25-207ENST00000464435 C1QBPQ07021 282 aaKnown RBP17.2■□□□□ 0.34
USP25-207ENST00000464435 KCNA4P22459 653 aa17.13■□□□□ 0.33
USP25-207ENST00000464435 DNAJC5BQ9UF47 199 aa17.11■□□□□ 0.33
USP25-207ENST00000464435 NPM3O75607 178 aaKnown RBP17.07■□□□□ 0.32
USP25-207ENST00000464435 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.86■□□□□ 0.29
USP25-207ENST00000464435 U3KPZ7 1027 aaPredicted RBP16.5■□□□□ 0.23
USP25-207ENST00000464435 SPINK5Q9NQ38 1064 aaPredicted RBP16.37■□□□□ 0.21
USP25-207ENST00000464435 CAPN15O75808 1086 aa16.32■□□□□ 0.2
USP25-207ENST00000464435 SLC4A1APQ9BWU0 796 aaKnown RBP16.32■□□□□ 0.2
USP25-207ENST00000464435 DSG3P32926 999 aa16.31■□□□□ 0.2
USP25-207ENST00000464435 SLC4A2P04920 1241 aa16.18■□□□□ 0.18
USP25-207ENST00000464435 POTEHQ6S545 545 aa16.15■□□□□ 0.18
USP25-207ENST00000464435 TRHP20396 242 aaPredicted RBP16■□□□□ 0.15
USP25-207ENST00000464435 ABCB7O75027 752 aa15.94■□□□□ 0.14
USP25-207ENST00000464435 ZNF219Q9P2Y4 722 aaPredicted RBP15.93■□□□□ 0.14
USP25-207ENST00000464435 APLP2Q06481 763 aa15.92■□□□□ 0.14
USP25-207ENST00000464435 FOXD4L1Q9NU39 408 aa15.92■□□□□ 0.14
USP25-207ENST00000464435 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.9■□□□□ 0.14
USP25-207ENST00000464435 HNRNPUL2Q1KMD3 747 aaKnown RBP15.9■□□□□ 0.14
USP25-207ENST00000464435 MYCNP04198 464 aaPredicted RBP15.85■□□□□ 0.13
USP25-207ENST00000464435 SAMD1Q6SPF0 538 aaPredicted RBP15.79■□□□□ 0.12
USP25-207ENST00000464435 ZBTB22O15209 634 aa15.72■□□□□ 0.11
USP25-207ENST00000464435 RBM42Q9BTD8 480 aaKnown RBP15.52■□□□□ 0.08
USP25-207ENST00000464435 POLA2Q14181 598 aa15.51■□□□□ 0.07
USP25-207ENST00000464435 ATXN8OSP0DMR3 200 aa15.49■□□□□ 0.07
USP25-207ENST00000464435 CSRNP3Q8WYN3 585 aa15.48■□□□□ 0.07
USP25-207ENST00000464435 EHMT2Q96KQ7 1210 aa15.47■□□□□ 0.07
USP25-207ENST00000464435 CHRDL2Q6WN34 429 aa15.32■□□□□ 0.04
USP25-207ENST00000464435 ATF5Q9Y2D1 282 aaPredicted RBP15.29■□□□□ 0.04
USP25-207ENST00000464435 AKT1S1Q96B36 256 aa15.12■□□□□ 0.01
USP25-207ENST00000464435 ZBTB12Q9Y330 459 aaPredicted RBP15.11■□□□□ 0.01
USP25-207ENST00000464435 OSCARQ8IYS5 282 aa15.03■□□□□ -0
USP25-207ENST00000464435 REM2Q8IYK8 340 aaPredicted RBP15□□□□□ -0.01
USP25-207ENST00000464435 PIP4P2Q8N4L2 257 aa14.92□□□□□ -0.02
USP25-207ENST00000464435 SP7Q8TDD2 431 aaPredicted RBP14.89□□□□□ -0.03
USP25-207ENST00000464435 PITPNM1O00562 1244 aa14.85□□□□□ -0.03
USP25-207ENST00000464435 FBLN2P98095 1184 aa14.82□□□□□ -0.04
USP25-207ENST00000464435 FXR2P51116 673 aaKnown RBP eCLIP14.77□□□□□ -0.05
USP25-207ENST00000464435 HAX1O00165 279 aa14.71□□□□□ -0.05
USP25-207ENST00000464435 MKRN4PQ13434 485 aaPredicted RBP14.66□□□□□ -0.06
USP25-207ENST00000464435 SPDYE2BA6NHP3 402 aa14.65□□□□□ -0.06
USP25-207ENST00000464435 SPDYE6P0CI01 402 aa14.65□□□□□ -0.06
USP25-207ENST00000464435 SPDYE2Q495Y8 402 aa14.65□□□□□ -0.06
USP25-207ENST00000464435 EVX2Q03828 476 aa14.55□□□□□ -0.08
USP25-207ENST00000464435 CLEC11AQ9Y240 323 aa14.48□□□□□ -0.09
USP25-207ENST00000464435 PRKAR2AP13861 404 aaKnown RBP14.46□□□□□ -0.09
USP25-207ENST00000464435 SPDYE1Q8NFV5 336 aaPredicted RBP14.46□□□□□ -0.09
USP25-207ENST00000464435 ZNF692Q9BU19 519 aaPredicted RBP14.44□□□□□ -0.1
USP25-207ENST00000464435 SSUH2Q9Y2M2 353 aa14.44□□□□□ -0.1
USP25-207ENST00000464435 C19orf67A6NJJ6 358 aa14.3□□□□□ -0.12
USP25-207ENST00000464435 SPDYE4A6NLX3 237 aa14.27□□□□□ -0.13
USP25-207ENST00000464435 CHADLQ6NUI6 762 aa14.25□□□□□ -0.13
USP25-207ENST00000464435 PABPN1Q86U42 306 aaKnown RBP eCLIP14.23□□□□□ -0.13
USP25-207ENST00000464435 PRR29P0C7W0 189 aa14.19□□□□□ -0.14
USP25-207ENST00000464435 GABBR2O75899 941 aa14.17□□□□□ -0.14
USP25-207ENST00000464435 PROM2Q8N271 834 aa14.05□□□□□ -0.16
USP25-207ENST00000464435 STAG3Q9UJ98 1225 aa14.05□□□□□ -0.16
USP25-207ENST00000464435 FKBP8Q14318 412 aa14□□□□□ -0.17
USP25-207ENST00000464435 FARP1Q9Y4F1 1045 aaPredicted RBP13.99□□□□□ -0.17
USP25-207ENST00000464435 CD44P16070 742 aaKnown RBP13.98□□□□□ -0.17
USP25-207ENST00000464435 LHX8Q68G74 356 aa13.98□□□□□ -0.17
USP25-207ENST00000464435 POTEIP0CG38 1075 aa13.89□□□□□ -0.19
USP25-207ENST00000464435 CLCN6P51797 869 aa13.79□□□□□ -0.2
USP25-207ENST00000464435 CREBZFQ9NS37 354 aa13.79□□□□□ -0.2
USP25-207ENST00000464435 ZNF579Q8NAF0 562 aaKnown RBP13.74□□□□□ -0.21
USP25-207ENST00000464435 ZRANB1Q9UGI0 708 aa13.74□□□□□ -0.21
USP25-207ENST00000464435 FBXO3Q9UK99 471 aa13.72□□□□□ -0.21
USP25-207ENST00000464435 DCBLD2Q96PD2 775 aa13.71□□□□□ -0.21
USP25-207ENST00000464435 PLSCR2Q9NRY7 297 aa13.68□□□□□ -0.22
USP25-207ENST00000464435 GALR2O43603 387 aaPredicted RBP13.62□□□□□ -0.23
USP25-207ENST00000464435 PLEKHG5O94827 1062 aa13.61□□□□□ -0.23
USP25-207ENST00000464435 MIER1Q8N108 512 aa13.56□□□□□ -0.24
USP25-207ENST00000464435 NPM1P06748 294 aaKnown RBP eCLIP13.54□□□□□ -0.24
USP25-207ENST00000464435 PHF12Q96QT6 1004 aa13.54□□□□□ -0.24
USP25-207ENST00000464435 PAK3O75914 559 aaPredicted RBP13.52□□□□□ -0.25
USP25-207ENST00000464435 MNX1P50219 401 aaPredicted RBP13.52□□□□□ -0.25
USP25-207ENST00000464435 PLCD3Q8N3E9 789 aa13.52□□□□□ -0.25
USP25-207ENST00000464435 ZBTB47Q9UFB7 747 aaPredicted RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms