RNA–Protein interactions for RNA: ENST00000464082.1

CD46-211, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 567 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-211ENST00000464082 AEBP2Q6ZN18 517 aaPredicted RBP30.92■■■□□ 2.54
CD46-211ENST00000464082 CHIC1Q5VXU3 224 aa28.93■■■□□ 2.22
CD46-211ENST00000464082 SENP3Q9H4L4 574 aaPredicted RBP26.3■■□□□ 1.8
CD46-211ENST00000464082 PHF23Q9BUL5 403 aaPredicted RBP25.98■■□□□ 1.75
CD46-211ENST00000464082 FOXD1Q16676 465 aa24.65■■□□□ 1.54
CD46-211ENST00000464082 POTEDQ86YR6 584 aa23.26■■□□□ 1.31
CD46-211ENST00000464082 MSH5O43196 834 aa23.1■■□□□ 1.29
CD46-211ENST00000464082 PLPPR3Q6T4P5 718 aa22.91■■□□□ 1.26
CD46-211ENST00000464082 PIAS4Q8N2W9 510 aaPredicted RBP22.91■■□□□ 1.26
CD46-211ENST00000464082 PPP6R1Q9UPN7 881 aa22.83■■□□□ 1.25
CD46-211ENST00000464082 ADRA2BP18089 450 aa22.72■■□□□ 1.23
CD46-211ENST00000464082 MAPK8IP2Q13387 824 aaPredicted RBP21■□□□□ 0.95
CD46-211ENST00000464082 DMRT2Q9Y5R5 561 aa20.83■□□□□ 0.93
CD46-211ENST00000464082 SCAF1Q9H7N4 1312 aaKnown RBP20.63■□□□□ 0.89
CD46-211ENST00000464082 CACNB1Q02641 598 aaPredicted RBP20.1■□□□□ 0.81
CD46-211ENST00000464082 PPP4R3CPQ6ZMV5 832 aa20.08■□□□□ 0.81
CD46-211ENST00000464082 DCAF8L1A6NGE4 600 aa20.03■□□□□ 0.8
CD46-211ENST00000464082 HOXD11P31277 338 aaPredicted RBP19.92■□□□□ 0.78
CD46-211ENST00000464082 CNKSR2Q8WXI2 1034 aa19.74■□□□□ 0.75
CD46-211ENST00000464082 RNF39Q9H2S5 420 aa19.74■□□□□ 0.75
CD46-211ENST00000464082 RNF216Q9NWF9 866 aaPredicted RBP19.66■□□□□ 0.74
CD46-211ENST00000464082 C1QBPQ07021 282 aaKnown RBP19.38■□□□□ 0.69
CD46-211ENST00000464082 DNAJC5BQ9UF47 199 aa19.21■□□□□ 0.67
CD46-211ENST00000464082 NCBP3Q53F19 620 aaKnown RBP19.12■□□□□ 0.65
CD46-211ENST00000464082 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.98■□□□□ 0.63
CD46-211ENST00000464082 NPM3O75607 178 aaKnown RBP18.94■□□□□ 0.62
CD46-211ENST00000464082 U3KPZ7 1027 aaPredicted RBP18.57■□□□□ 0.56
CD46-211ENST00000464082 SPINK5Q9NQ38 1064 aaPredicted RBP18.46■□□□□ 0.55
CD46-211ENST00000464082 CAPN15O75808 1086 aa18.39■□□□□ 0.53
CD46-211ENST00000464082 DSG3P32926 999 aa18.38■□□□□ 0.53
CD46-211ENST00000464082 KCNA4P22459 653 aa18.29■□□□□ 0.52
CD46-211ENST00000464082 SLC4A2P04920 1241 aa18.21■□□□□ 0.51
CD46-211ENST00000464082 POTEHQ6S545 545 aa18.14■□□□□ 0.49
CD46-211ENST00000464082 TRHP20396 242 aaPredicted RBP18.02■□□□□ 0.48
CD46-211ENST00000464082 ABCB7O75027 752 aa17.97■□□□□ 0.47
CD46-211ENST00000464082 ZNF219Q9P2Y4 722 aaPredicted RBP17.89■□□□□ 0.45
CD46-211ENST00000464082 APLP2Q06481 763 aa17.85■□□□□ 0.45
CD46-211ENST00000464082 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.8■□□□□ 0.44
CD46-211ENST00000464082 HNRNPUL2Q1KMD3 747 aaKnown RBP17.8■□□□□ 0.44
CD46-211ENST00000464082 SAMD1Q6SPF0 538 aaPredicted RBP17.71■□□□□ 0.43
CD46-211ENST00000464082 MYCNP04198 464 aaPredicted RBP17.46■□□□□ 0.39
CD46-211ENST00000464082 POLA2Q14181 598 aa17.46■□□□□ 0.39
CD46-211ENST00000464082 RBM42Q9BTD8 480 aaKnown RBP17.43■□□□□ 0.38
CD46-211ENST00000464082 CHRDL2Q6WN34 429 aa17.28■□□□□ 0.36
CD46-211ENST00000464082 ATF5Q9Y2D1 282 aaPredicted RBP17.22■□□□□ 0.35
CD46-211ENST00000464082 SLC4A1APQ9BWU0 796 aaKnown RBP17.14■□□□□ 0.33
CD46-211ENST00000464082 FOXD4L1Q9NU39 408 aa17.1■□□□□ 0.33
CD46-211ENST00000464082 AKT1S1Q96B36 256 aa17■□□□□ 0.31
CD46-211ENST00000464082 ZBTB12Q9Y330 459 aaPredicted RBP16.96■□□□□ 0.31
CD46-211ENST00000464082 OSCARQ8IYS5 282 aa16.92■□□□□ 0.3
CD46-211ENST00000464082 REM2Q8IYK8 340 aaPredicted RBP16.9■□□□□ 0.3
CD46-211ENST00000464082 ZBTB22O15209 634 aa16.85■□□□□ 0.29
CD46-211ENST00000464082 PIP4P2Q8N4L2 257 aa16.82■□□□□ 0.28
CD46-211ENST00000464082 SP7Q8TDD2 431 aaPredicted RBP16.82■□□□□ 0.28
CD46-211ENST00000464082 PITPNM1O00562 1244 aa16.74■□□□□ 0.27
CD46-211ENST00000464082 FXR2P51116 673 aaKnown RBP eCLIP16.64■□□□□ 0.25
CD46-211ENST00000464082 HAX1O00165 279 aa16.6■□□□□ 0.25
CD46-211ENST00000464082 ATXN8OSP0DMR3 200 aa16.56■□□□□ 0.24
CD46-211ENST00000464082 EVX2Q03828 476 aa16.46■□□□□ 0.23
CD46-211ENST00000464082 SPDYE2BA6NHP3 402 aa16.44■□□□□ 0.22
CD46-211ENST00000464082 SPDYE6P0CI01 402 aa16.44■□□□□ 0.22
CD46-211ENST00000464082 SPDYE2Q495Y8 402 aa16.44■□□□□ 0.22
CD46-211ENST00000464082 FBLN2P98095 1184 aa16.43■□□□□ 0.22
CD46-211ENST00000464082 MKRN4PQ13434 485 aaPredicted RBP16.38■□□□□ 0.21
CD46-211ENST00000464082 CLEC11AQ9Y240 323 aa16.31■□□□□ 0.2
CD46-211ENST00000464082 PRKAR2AP13861 404 aaKnown RBP16.29■□□□□ 0.2
CD46-211ENST00000464082 SPDYE1Q8NFV5 336 aaPredicted RBP16.25■□□□□ 0.19
CD46-211ENST00000464082 ZNF692Q9BU19 519 aaPredicted RBP16.23■□□□□ 0.19
CD46-211ENST00000464082 SSUH2Q9Y2M2 353 aa16.22■□□□□ 0.19
CD46-211ENST00000464082 C19orf67A6NJJ6 358 aa16.12■□□□□ 0.17
CD46-211ENST00000464082 CHADLQ6NUI6 762 aa16.07■□□□□ 0.16
CD46-211ENST00000464082 PABPN1Q86U42 306 aaKnown RBP eCLIP16.01■□□□□ 0.15
CD46-211ENST00000464082 GABBR2O75899 941 aa15.99■□□□□ 0.15
CD46-211ENST00000464082 PRR29P0C7W0 189 aa15.95■□□□□ 0.14
CD46-211ENST00000464082 LHX8Q68G74 356 aa15.78■□□□□ 0.12
CD46-211ENST00000464082 FARP1Q9Y4F1 1045 aaPredicted RBP15.75■□□□□ 0.11
CD46-211ENST00000464082 CD44P16070 742 aaKnown RBP15.74■□□□□ 0.11
CD46-211ENST00000464082 CSRNP3Q8WYN3 585 aa15.71■□□□□ 0.11
CD46-211ENST00000464082 POTEIP0CG38 1075 aa15.7■□□□□ 0.1
CD46-211ENST00000464082 CREBZFQ9NS37 354 aa15.52■□□□□ 0.08
CD46-211ENST00000464082 ZRANB1Q9UGI0 708 aa15.47■□□□□ 0.07
CD46-211ENST00000464082 CLCN6P51797 869 aa15.46■□□□□ 0.07
CD46-211ENST00000464082 ZNF579Q8NAF0 562 aaKnown RBP15.45■□□□□ 0.06
CD46-211ENST00000464082 DCBLD2Q96PD2 775 aa15.45■□□□□ 0.06
CD46-211ENST00000464082 STAG3Q9UJ98 1225 aa15.39■□□□□ 0.05
CD46-211ENST00000464082 SPDYE4A6NLX3 237 aa15.37■□□□□ 0.05
CD46-211ENST00000464082 GALR2O43603 387 aaPredicted RBP15.36■□□□□ 0.05
CD46-211ENST00000464082 EHMT2Q96KQ7 1210 aa15.32■□□□□ 0.04
CD46-211ENST00000464082 PHF12Q96QT6 1004 aa15.26■□□□□ 0.03
CD46-211ENST00000464082 MNX1P50219 401 aaPredicted RBP15.22■□□□□ 0.03
CD46-211ENST00000464082 POTEB2H3BUK9 544 aa15.2■□□□□ 0.02
CD46-211ENST00000464082 PAK3O75914 559 aaPredicted RBP15.18■□□□□ 0.02
CD46-211ENST00000464082 OTUD5Q96G74 571 aa15.17■□□□□ 0.02
CD46-211ENST00000464082 NPM1P06748 294 aaKnown RBP eCLIP15.13■□□□□ 0.01
CD46-211ENST00000464082 PELP1Q8IZL8 1130 aaKnown RBP15.13■□□□□ 0.01
CD46-211ENST00000464082 PLSCR2Q9NRY7 297 aa15.08■□□□□ 0
CD46-211ENST00000464082 MS4A3Q96HJ5 214 aa15.02■□□□□ -0
CD46-211ENST00000464082 ASTLQ6HA08 431 aaPredicted RBP14.97□□□□□ -0.01
CD46-211ENST00000464082 ATMINO43313 823 aaPredicted RBP14.95□□□□□ -0.02
CD46-211ENST00000464082 TSPYL2Q9H2G4 693 aaPredicted RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms