RNA–Protein interactions for RNA: ENST00000464001.1

ITGB1-208, Transcript of integrin subunit beta 1, humanhuman

TSL 2

Gene ITGB1, Length 316 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-208ENST00000464001 AEBP2Q6ZN18 517 aaPredicted RBP27.66■■■□□ 2.02
ITGB1-208ENST00000464001 CHIC1Q5VXU3 224 aa26.66■■□□□ 1.86
ITGB1-208ENST00000464001 SENP3Q9H4L4 574 aaPredicted RBP23.63■■□□□ 1.37
ITGB1-208ENST00000464001 PHF23Q9BUL5 403 aaPredicted RBP23.35■■□□□ 1.33
ITGB1-208ENST00000464001 FOXD1Q16676 465 aa21.93■■□□□ 1.1
ITGB1-208ENST00000464001 PLPPR3Q6T4P5 718 aa21.49■■□□□ 1.03
ITGB1-208ENST00000464001 PPP6R1Q9UPN7 881 aa20.74■□□□□ 0.91
ITGB1-208ENST00000464001 ADRA2BP18089 450 aa20.71■□□□□ 0.91
ITGB1-208ENST00000464001 PIAS4Q8N2W9 510 aaPredicted RBP20.6■□□□□ 0.89
ITGB1-208ENST00000464001 MSH5O43196 834 aa20.46■□□□□ 0.87
ITGB1-208ENST00000464001 POTEDQ86YR6 584 aa19.33■□□□□ 0.68
ITGB1-208ENST00000464001 SCAF1Q9H7N4 1312 aaKnown RBP19.05■□□□□ 0.64
ITGB1-208ENST00000464001 MAPK8IP2Q13387 824 aaPredicted RBP18.92■□□□□ 0.62
ITGB1-208ENST00000464001 PPP4R3CPQ6ZMV5 832 aa18.86■□□□□ 0.61
ITGB1-208ENST00000464001 DMRT2Q9Y5R5 561 aa18.77■□□□□ 0.6
ITGB1-208ENST00000464001 CNKSR2Q8WXI2 1034 aa18.45■□□□□ 0.54
ITGB1-208ENST00000464001 NCBP3Q53F19 620 aaKnown RBP18.3■□□□□ 0.52
ITGB1-208ENST00000464001 HOXD11P31277 338 aaPredicted RBP18.21■□□□□ 0.51
ITGB1-208ENST00000464001 RNF216Q9NWF9 866 aaPredicted RBP18.19■□□□□ 0.5
ITGB1-208ENST00000464001 DCAF8L1A6NGE4 600 aa18.01■□□□□ 0.47
ITGB1-208ENST00000464001 NPM3O75607 178 aaKnown RBP17.96■□□□□ 0.47
ITGB1-208ENST00000464001 KCNA4P22459 653 aa17.9■□□□□ 0.46
ITGB1-208ENST00000464001 DNAJC5BQ9UF47 199 aa17.56■□□□□ 0.4
ITGB1-208ENST00000464001 RNF39Q9H2S5 420 aa17.44■□□□□ 0.38
ITGB1-208ENST00000464001 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.39■□□□□ 0.37
ITGB1-208ENST00000464001 CACNB1Q02641 598 aaPredicted RBP17.34■□□□□ 0.37
ITGB1-208ENST00000464001 C1QBPQ07021 282 aaKnown RBP17.26■□□□□ 0.35
ITGB1-208ENST00000464001 SLC4A2P04920 1241 aa17.04■□□□□ 0.32
ITGB1-208ENST00000464001 SLC4A1APQ9BWU0 796 aaKnown RBP17.01■□□□□ 0.31
ITGB1-208ENST00000464001 U3KPZ7 1027 aaPredicted RBP17.01■□□□□ 0.31
ITGB1-208ENST00000464001 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.74■□□□□ 0.27
ITGB1-208ENST00000464001 HNRNPUL2Q1KMD3 747 aaKnown RBP16.74■□□□□ 0.27
ITGB1-208ENST00000464001 APLP2Q06481 763 aa16.69■□□□□ 0.26
ITGB1-208ENST00000464001 CAPN15O75808 1086 aa16.66■□□□□ 0.26
ITGB1-208ENST00000464001 SPINK5Q9NQ38 1064 aaPredicted RBP16.65■□□□□ 0.26
ITGB1-208ENST00000464001 MYCNP04198 464 aaPredicted RBP16.64■□□□□ 0.25
ITGB1-208ENST00000464001 SAMD1Q6SPF0 538 aaPredicted RBP16.64■□□□□ 0.25
ITGB1-208ENST00000464001 FOXD4L1Q9NU39 408 aa16.64■□□□□ 0.25
ITGB1-208ENST00000464001 TRHP20396 242 aaPredicted RBP16.47■□□□□ 0.23
ITGB1-208ENST00000464001 ZNF219Q9P2Y4 722 aaPredicted RBP16.47■□□□□ 0.23
ITGB1-208ENST00000464001 DSG3P32926 999 aa16.45■□□□□ 0.22
ITGB1-208ENST00000464001 ZBTB22O15209 634 aa16.42■□□□□ 0.22
ITGB1-208ENST00000464001 ABCB7O75027 752 aa16.26■□□□□ 0.19
ITGB1-208ENST00000464001 ATF5Q9Y2D1 282 aaPredicted RBP16.15■□□□□ 0.18
ITGB1-208ENST00000464001 ATXN8OSP0DMR3 200 aa16.12■□□□□ 0.17
ITGB1-208ENST00000464001 POLA2Q14181 598 aa16.1■□□□□ 0.17
ITGB1-208ENST00000464001 CSRNP3Q8WYN3 585 aa16.02■□□□□ 0.16
ITGB1-208ENST00000464001 EHMT2Q96KQ7 1210 aa16■□□□□ 0.15
ITGB1-208ENST00000464001 ZBTB12Q9Y330 459 aaPredicted RBP15.85■□□□□ 0.13
ITGB1-208ENST00000464001 RBM42Q9BTD8 480 aaKnown RBP15.75■□□□□ 0.11
ITGB1-208ENST00000464001 FBLN2P98095 1184 aa15.61■□□□□ 0.09
ITGB1-208ENST00000464001 OSCARQ8IYS5 282 aa15.55■□□□□ 0.08
ITGB1-208ENST00000464001 MKRN4PQ13434 485 aaPredicted RBP15.44■□□□□ 0.06
ITGB1-208ENST00000464001 AKT1S1Q96B36 256 aa15.44■□□□□ 0.06
ITGB1-208ENST00000464001 SPDYE2BA6NHP3 402 aa15.36■□□□□ 0.05
ITGB1-208ENST00000464001 SPDYE6P0CI01 402 aa15.36■□□□□ 0.05
ITGB1-208ENST00000464001 SPDYE2Q495Y8 402 aa15.36■□□□□ 0.05
ITGB1-208ENST00000464001 REM2Q8IYK8 340 aaPredicted RBP15.27■□□□□ 0.04
ITGB1-208ENST00000464001 ZNF692Q9BU19 519 aaPredicted RBP15.24■□□□□ 0.03
ITGB1-208ENST00000464001 POTEHQ6S545 545 aa15.23■□□□□ 0.03
ITGB1-208ENST00000464001 CHRDL2Q6WN34 429 aa15.22■□□□□ 0.03
ITGB1-208ENST00000464001 SSUH2Q9Y2M2 353 aa15.16■□□□□ 0.02
ITGB1-208ENST00000464001 PITPNM1O00562 1244 aa15.08■□□□□ 0
ITGB1-208ENST00000464001 SPDYE1Q8NFV5 336 aaPredicted RBP15.02■□□□□ -0
ITGB1-208ENST00000464001 PABPN1Q86U42 306 aaKnown RBP eCLIP15.01□□□□□ -0.01
ITGB1-208ENST00000464001 CLEC11AQ9Y240 323 aa14.97□□□□□ -0.01
ITGB1-208ENST00000464001 SPDYE4A6NLX3 237 aa14.94□□□□□ -0.02
ITGB1-208ENST00000464001 PIP4P2Q8N4L2 257 aa14.92□□□□□ -0.02
ITGB1-208ENST00000464001 FXR2P51116 673 aaKnown RBP eCLIP14.9□□□□□ -0.02
ITGB1-208ENST00000464001 PRR29P0C7W0 189 aa14.78□□□□□ -0.04
ITGB1-208ENST00000464001 PRKAR2AP13861 404 aaKnown RBP14.72□□□□□ -0.05
ITGB1-208ENST00000464001 STAG3Q9UJ98 1225 aa14.72□□□□□ -0.05
ITGB1-208ENST00000464001 HAX1O00165 279 aa14.6□□□□□ -0.07
ITGB1-208ENST00000464001 CHADLQ6NUI6 762 aa14.6□□□□□ -0.07
ITGB1-208ENST00000464001 PROM2Q8N271 834 aa14.59□□□□□ -0.07
ITGB1-208ENST00000464001 FKBP8Q14318 412 aa14.54□□□□□ -0.08
ITGB1-208ENST00000464001 CREBZFQ9NS37 354 aa14.45□□□□□ -0.1
ITGB1-208ENST00000464001 FARP1Q9Y4F1 1045 aaPredicted RBP14.45□□□□□ -0.1
ITGB1-208ENST00000464001 SP7Q8TDD2 431 aaPredicted RBP14.44□□□□□ -0.1
ITGB1-208ENST00000464001 C19orf67A6NJJ6 358 aa14.41□□□□□ -0.1
ITGB1-208ENST00000464001 EVX2Q03828 476 aa14.36□□□□□ -0.11
ITGB1-208ENST00000464001 CD44P16070 742 aaKnown RBP14.28□□□□□ -0.12
ITGB1-208ENST00000464001 NPM1P06748 294 aaKnown RBP eCLIP14.27□□□□□ -0.13
ITGB1-208ENST00000464001 PLEKHG5O94827 1062 aa14.26□□□□□ -0.13
ITGB1-208ENST00000464001 MIER1Q8N108 512 aa14.24□□□□□ -0.13
ITGB1-208ENST00000464001 MNX1P50219 401 aaPredicted RBP14.22□□□□□ -0.13
ITGB1-208ENST00000464001 FBXO3Q9UK99 471 aa14.2□□□□□ -0.14
ITGB1-208ENST00000464001 PLCD3Q8N3E9 789 aa14.17□□□□□ -0.14
ITGB1-208ENST00000464001 PAK3O75914 559 aaPredicted RBP14.15□□□□□ -0.14
ITGB1-208ENST00000464001 ZRANB1Q9UGI0 708 aa14.14□□□□□ -0.15
ITGB1-208ENST00000464001 GABBR2O75899 941 aa14.11□□□□□ -0.15
ITGB1-208ENST00000464001 CLCN6P51797 869 aa14.09□□□□□ -0.15
ITGB1-208ENST00000464001 ZBTB47Q9UFB7 747 aaPredicted RBP14.08□□□□□ -0.16
ITGB1-208ENST00000464001 ZNF579Q8NAF0 562 aaKnown RBP14.07□□□□□ -0.16
ITGB1-208ENST00000464001 TSPYL2Q9H2G4 693 aaPredicted RBP13.97□□□□□ -0.17
ITGB1-208ENST00000464001 VASPP50552 380 aaPredicted RBP13.95□□□□□ -0.18
ITGB1-208ENST00000464001 PHF12Q96QT6 1004 aa13.93□□□□□ -0.18
ITGB1-208ENST00000464001 RASEFQ8IZ41 740 aa13.91□□□□□ -0.18
ITGB1-208ENST00000464001 NUBP1P53384 320 aa13.87□□□□□ -0.19
ITGB1-208ENST00000464001 KLHL34Q8N239 644 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms