RNA–Protein interactions for RNA: ENST00000463829.1

USP9X-204, Transcript of ubiquitin specific peptidase 9 X-linked, humanhuman

TSL 3

Gene USP9X, Length 666 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP9X-204ENST00000463829 AEBP2Q6ZN18 517 aaPredicted RBP23.82■■□□□ 1.4
USP9X-204ENST00000463829 CHIC1Q5VXU3 224 aa22.75■■□□□ 1.23
USP9X-204ENST00000463829 SENP3Q9H4L4 574 aaPredicted RBP20.45■□□□□ 0.86
USP9X-204ENST00000463829 PHF23Q9BUL5 403 aaPredicted RBP20.16■□□□□ 0.82
USP9X-204ENST00000463829 FOXD1Q16676 465 aa18.97■□□□□ 0.63
USP9X-204ENST00000463829 PLPPR3Q6T4P5 718 aa18.27■□□□□ 0.52
USP9X-204ENST00000463829 MSH5O43196 834 aa17.83■□□□□ 0.44
USP9X-204ENST00000463829 PIAS4Q8N2W9 510 aaPredicted RBP17.8■□□□□ 0.44
USP9X-204ENST00000463829 PPP6R1Q9UPN7 881 aa17.74■□□□□ 0.43
USP9X-204ENST00000463829 ADRA2BP18089 450 aa17.73■□□□□ 0.43
USP9X-204ENST00000463829 POTEDQ86YR6 584 aa17.22■□□□□ 0.35
USP9X-204ENST00000463829 SCAF1Q9H7N4 1312 aaKnown RBP16.38■□□□□ 0.21
USP9X-204ENST00000463829 MAPK8IP2Q13387 824 aaPredicted RBP16.26■□□□□ 0.19
USP9X-204ENST00000463829 DMRT2Q9Y5R5 561 aa16.18■□□□□ 0.18
USP9X-204ENST00000463829 PPP4R3CPQ6ZMV5 832 aa15.99■□□□□ 0.15
USP9X-204ENST00000463829 CNKSR2Q8WXI2 1034 aa15.71■□□□□ 0.11
USP9X-204ENST00000463829 DCAF8L1A6NGE4 600 aa15.61■□□□□ 0.09
USP9X-204ENST00000463829 HOXD11P31277 338 aaPredicted RBP15.6■□□□□ 0.09
USP9X-204ENST00000463829 RNF216Q9NWF9 866 aaPredicted RBP15.53■□□□□ 0.08
USP9X-204ENST00000463829 NCBP3Q53F19 620 aaKnown RBP15.5■□□□□ 0.07
USP9X-204ENST00000463829 CACNB1Q02641 598 aaPredicted RBP15.29■□□□□ 0.04
USP9X-204ENST00000463829 RNF39Q9H2S5 420 aa15.15■□□□□ 0.02
USP9X-204ENST00000463829 NPM3O75607 178 aaKnown RBP15.13■□□□□ 0.01
USP9X-204ENST00000463829 DNAJC5BQ9UF47 199 aa15.08■□□□□ 0
USP9X-204ENST00000463829 C1QBPQ07021 282 aaKnown RBP15□□□□□ -0.01
USP9X-204ENST00000463829 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.96□□□□□ -0.01
USP9X-204ENST00000463829 KCNA4P22459 653 aa14.88□□□□□ -0.03
USP9X-204ENST00000463829 U3KPZ7 1027 aaPredicted RBP14.54□□□□□ -0.08
USP9X-204ENST00000463829 SLC4A2P04920 1241 aa14.41□□□□□ -0.1
USP9X-204ENST00000463829 CAPN15O75808 1086 aa14.39□□□□□ -0.11
USP9X-204ENST00000463829 APLP2Q06481 763 aa14.33□□□□□ -0.12
USP9X-204ENST00000463829 SPINK5Q9NQ38 1064 aaPredicted RBP14.31□□□□□ -0.12
USP9X-204ENST00000463829 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.29□□□□□ -0.12
USP9X-204ENST00000463829 HNRNPUL2Q1KMD3 747 aaKnown RBP14.29□□□□□ -0.12
USP9X-204ENST00000463829 DSG3P32926 999 aa14.2□□□□□ -0.14
USP9X-204ENST00000463829 SAMD1Q6SPF0 538 aaPredicted RBP14.18□□□□□ -0.14
USP9X-204ENST00000463829 TRHP20396 242 aaPredicted RBP14.16□□□□□ -0.14
USP9X-204ENST00000463829 ZNF219Q9P2Y4 722 aaPredicted RBP14.15□□□□□ -0.14
USP9X-204ENST00000463829 SLC4A1APQ9BWU0 796 aaKnown RBP14.13□□□□□ -0.15
USP9X-204ENST00000463829 MYCNP04198 464 aaPredicted RBP14.06□□□□□ -0.16
USP9X-204ENST00000463829 ABCB7O75027 752 aa14.01□□□□□ -0.17
USP9X-204ENST00000463829 FOXD4L1Q9NU39 408 aa13.93□□□□□ -0.18
USP9X-204ENST00000463829 EHMT2Q96KQ7 1210 aa13.88□□□□□ -0.19
USP9X-204ENST00000463829 POLA2Q14181 598 aa13.77□□□□□ -0.21
USP9X-204ENST00000463829 RBM42Q9BTD8 480 aaKnown RBP13.66□□□□□ -0.22
USP9X-204ENST00000463829 ZBTB22O15209 634 aa13.64□□□□□ -0.23
USP9X-204ENST00000463829 CSRNP3Q8WYN3 585 aa13.62□□□□□ -0.23
USP9X-204ENST00000463829 ATF5Q9Y2D1 282 aaPredicted RBP13.62□□□□□ -0.23
USP9X-204ENST00000463829 ZBTB12Q9Y330 459 aaPredicted RBP13.56□□□□□ -0.24
USP9X-204ENST00000463829 POTEHQ6S545 545 aa13.55□□□□□ -0.24
USP9X-204ENST00000463829 ATXN8OSP0DMR3 200 aa13.52□□□□□ -0.25
USP9X-204ENST00000463829 AKT1S1Q96B36 256 aa13.32□□□□□ -0.28
USP9X-204ENST00000463829 CHRDL2Q6WN34 429 aa13.28□□□□□ -0.28
USP9X-204ENST00000463829 OSCARQ8IYS5 282 aa13.28□□□□□ -0.28
USP9X-204ENST00000463829 FBLN2P98095 1184 aa13.26□□□□□ -0.29
USP9X-204ENST00000463829 REM2Q8IYK8 340 aaPredicted RBP13.16□□□□□ -0.3
USP9X-204ENST00000463829 SPDYE2BA6NHP3 402 aa13.1□□□□□ -0.31
USP9X-204ENST00000463829 SPDYE6P0CI01 402 aa13.1□□□□□ -0.31
USP9X-204ENST00000463829 SPDYE2Q495Y8 402 aa13.1□□□□□ -0.31
USP9X-204ENST00000463829 PITPNM1O00562 1244 aa13□□□□□ -0.33
USP9X-204ENST00000463829 MKRN4PQ13434 485 aaPredicted RBP13□□□□□ -0.33
USP9X-204ENST00000463829 ZNF692Q9BU19 519 aaPredicted RBP12.98□□□□□ -0.33
USP9X-204ENST00000463829 PIP4P2Q8N4L2 257 aa12.95□□□□□ -0.34
USP9X-204ENST00000463829 SPDYE1Q8NFV5 336 aaPredicted RBP12.89□□□□□ -0.35
USP9X-204ENST00000463829 FXR2P51116 673 aaKnown RBP eCLIP12.88□□□□□ -0.358e-10■■■□□ 16.2
USP9X-204ENST00000463829 CLEC11AQ9Y240 323 aa12.87□□□□□ -0.35
USP9X-204ENST00000463829 SSUH2Q9Y2M2 353 aa12.87□□□□□ -0.35
USP9X-204ENST00000463829 HAX1O00165 279 aa12.78□□□□□ -0.36
USP9X-204ENST00000463829 PABPN1Q86U42 306 aaKnown RBP eCLIP12.75□□□□□ -0.37
USP9X-204ENST00000463829 SP7Q8TDD2 431 aaPredicted RBP12.73□□□□□ -0.37
USP9X-204ENST00000463829 PRKAR2AP13861 404 aaKnown RBP12.7□□□□□ -0.38
USP9X-204ENST00000463829 PRR29P0C7W0 189 aa12.67□□□□□ -0.38
USP9X-204ENST00000463829 CHADLQ6NUI6 762 aa12.54□□□□□ -0.4
USP9X-204ENST00000463829 SPDYE4A6NLX3 237 aa12.52□□□□□ -0.41
USP9X-204ENST00000463829 STAG3Q9UJ98 1225 aa12.5□□□□□ -0.41
USP9X-204ENST00000463829 EVX2Q03828 476 aa12.48□□□□□ -0.41
USP9X-204ENST00000463829 C19orf67A6NJJ6 358 aa12.47□□□□□ -0.41
USP9X-204ENST00000463829 FARP1Q9Y4F1 1045 aaPredicted RBP12.39□□□□□ -0.43
USP9X-204ENST00000463829 CD44P16070 742 aaKnown RBP12.31□□□□□ -0.44
USP9X-204ENST00000463829 FKBP8Q14318 412 aa12.31□□□□□ -0.44
USP9X-204ENST00000463829 GABBR2O75899 941 aa12.28□□□□□ -0.44
USP9X-204ENST00000463829 CREBZFQ9NS37 354 aa12.27□□□□□ -0.45
USP9X-204ENST00000463829 CLCN6P51797 869 aa12.21□□□□□ -0.45
USP9X-204ENST00000463829 NPM1P06748 294 aaKnown RBP eCLIP12.18□□□□□ -0.46
USP9X-204ENST00000463829 PAK3O75914 559 aaPredicted RBP12.16□□□□□ -0.46
USP9X-204ENST00000463829 ZRANB1Q9UGI0 708 aa12.16□□□□□ -0.46
USP9X-204ENST00000463829 PROM2Q8N271 834 aa12.13□□□□□ -0.47
USP9X-204ENST00000463829 ZNF579Q8NAF0 562 aaKnown RBP12.09□□□□□ -0.47
USP9X-204ENST00000463829 PLEKHG5O94827 1062 aa12.06□□□□□ -0.48
USP9X-204ENST00000463829 DCBLD2Q96PD2 775 aa12.05□□□□□ -0.48
USP9X-204ENST00000463829 MNX1P50219 401 aaPredicted RBP12.02□□□□□ -0.49
USP9X-204ENST00000463829 MIER1Q8N108 512 aa11.99□□□□□ -0.49
USP9X-204ENST00000463829 LHX8Q68G74 356 aa11.96□□□□□ -0.49
USP9X-204ENST00000463829 POTEIP0CG38 1075 aa11.94□□□□□ -0.5
USP9X-204ENST00000463829 PHF12Q96QT6 1004 aa11.94□□□□□ -0.5
USP9X-204ENST00000463829 GALR2O43603 387 aaPredicted RBP11.92□□□□□ -0.5
USP9X-204ENST00000463829 PLCD3Q8N3E9 789 aa11.91□□□□□ -0.5
USP9X-204ENST00000463829 TSPYL2Q9H2G4 693 aaPredicted RBP11.9□□□□□ -0.5
USP9X-204ENST00000463829 ZBTB47Q9UFB7 747 aaPredicted RBP11.85□□□□□ -0.51
USP9X-204ENST00000463829 FBXO3Q9UK99 471 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 141.7 ms