RNA–Protein interactions for RNA: ENST00000463709.1

TM9SF2-202, Transcript of transmembrane 9 superfamily member 2, humanhuman

TSL 3

Gene TM9SF2, Length 727 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF2-202ENST00000463709 AEBP2Q6ZN18 517 aaPredicted RBP27.1■■□□□ 1.93
TM9SF2-202ENST00000463709 CHIC1Q5VXU3 224 aa25.75■■□□□ 1.71
TM9SF2-202ENST00000463709 SENP3Q9H4L4 574 aaPredicted RBP23.12■■□□□ 1.29
TM9SF2-202ENST00000463709 PHF23Q9BUL5 403 aaPredicted RBP22.81■■□□□ 1.24
TM9SF2-202ENST00000463709 FOXD1Q16676 465 aa21.53■■□□□ 1.04
TM9SF2-202ENST00000463709 PLPPR3Q6T4P5 718 aa20.58■□□□□ 0.89
TM9SF2-202ENST00000463709 MSH5O43196 834 aa20.16■□□□□ 0.82
TM9SF2-202ENST00000463709 PPP6R1Q9UPN7 881 aa20.14■□□□□ 0.81
TM9SF2-202ENST00000463709 PIAS4Q8N2W9 510 aaPredicted RBP20.13■□□□□ 0.81
TM9SF2-202ENST00000463709 ADRA2BP18089 450 aa20.08■□□□□ 0.81
TM9SF2-202ENST00000463709 POTEDQ86YR6 584 aa19.65■□□□□ 0.74
TM9SF2-202ENST00000463709 MAPK8IP2Q13387 824 aaPredicted RBP18.43■□□□□ 0.54
TM9SF2-202ENST00000463709 SCAF1Q9H7N4 1312 aaKnown RBP18.39■□□□□ 0.53
TM9SF2-202ENST00000463709 DMRT2Q9Y5R5 561 aa18.34■□□□□ 0.53
TM9SF2-202ENST00000463709 PPP4R3CPQ6ZMV5 832 aa18.03■□□□□ 0.48
TM9SF2-202ENST00000463709 CNKSR2Q8WXI2 1034 aa17.7■□□□□ 0.42
TM9SF2-202ENST00000463709 HOXD11P31277 338 aaPredicted RBP17.67■□□□□ 0.42
TM9SF2-202ENST00000463709 DCAF8L1A6NGE4 600 aa17.55■□□□□ 0.4
TM9SF2-202ENST00000463709 RNF216Q9NWF9 866 aaPredicted RBP17.54■□□□□ 0.4
TM9SF2-202ENST00000463709 NCBP3Q53F19 620 aaKnown RBP17.35■□□□□ 0.37
TM9SF2-202ENST00000463709 CACNB1Q02641 598 aaPredicted RBP17.28■□□□□ 0.36
TM9SF2-202ENST00000463709 RNF39Q9H2S5 420 aa17.21■□□□□ 0.35
TM9SF2-202ENST00000463709 NPM3O75607 178 aaKnown RBP17.1■□□□□ 0.33
TM9SF2-202ENST00000463709 DNAJC5BQ9UF47 199 aa17.08■□□□□ 0.32
TM9SF2-202ENST00000463709 C1QBPQ07021 282 aaKnown RBP16.96■□□□□ 0.31
TM9SF2-202ENST00000463709 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.82■□□□□ 0.28
TM9SF2-202ENST00000463709 KCNA4P22459 653 aa16.78■□□□□ 0.28
TM9SF2-202ENST00000463709 U3KPZ7 1027 aaPredicted RBP16.48■□□□□ 0.23
TM9SF2-202ENST00000463709 SLC4A2P04920 1241 aa16.32■□□□□ 0.2
TM9SF2-202ENST00000463709 SPINK5Q9NQ38 1064 aaPredicted RBP16.23■□□□□ 0.19
TM9SF2-202ENST00000463709 CAPN15O75808 1086 aa16.19■□□□□ 0.18
TM9SF2-202ENST00000463709 DSG3P32926 999 aa16.11■□□□□ 0.17
TM9SF2-202ENST00000463709 APLP2Q06481 763 aa16.03■□□□□ 0.16
TM9SF2-202ENST00000463709 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.02■□□□□ 0.16
TM9SF2-202ENST00000463709 HNRNPUL2Q1KMD3 747 aaKnown RBP16.02■□□□□ 0.16
TM9SF2-202ENST00000463709 SLC4A1APQ9BWU0 796 aaKnown RBP15.95■□□□□ 0.14
TM9SF2-202ENST00000463709 TRHP20396 242 aaPredicted RBP15.94■□□□□ 0.14
TM9SF2-202ENST00000463709 SAMD1Q6SPF0 538 aaPredicted RBP15.93■□□□□ 0.14
TM9SF2-202ENST00000463709 ZNF219Q9P2Y4 722 aaPredicted RBP15.93■□□□□ 0.14
TM9SF2-202ENST00000463709 EHMT2Q96KQ7 1210 aa15.85■□□□□ 0.13
TM9SF2-202ENST00000463709 ABCB7O75027 752 aa15.82■□□□□ 0.12
TM9SF2-202ENST00000463709 MYCNP04198 464 aaPredicted RBP15.82■□□□□ 0.12
TM9SF2-202ENST00000463709 FOXD4L1Q9NU39 408 aa15.66■□□□□ 0.1
TM9SF2-202ENST00000463709 POLA2Q14181 598 aa15.52■□□□□ 0.08
TM9SF2-202ENST00000463709 CSRNP3Q8WYN3 585 aa15.49■□□□□ 0.07
TM9SF2-202ENST00000463709 ZBTB22O15209 634 aa15.45■□□□□ 0.06
TM9SF2-202ENST00000463709 ATF5Q9Y2D1 282 aaPredicted RBP15.45■□□□□ 0.06
TM9SF2-202ENST00000463709 POTEHQ6S545 545 aa15.4■□□□□ 0.06
TM9SF2-202ENST00000463709 RBM42Q9BTD8 480 aaKnown RBP15.38■□□□□ 0.05
TM9SF2-202ENST00000463709 ZBTB12Q9Y330 459 aaPredicted RBP15.22■□□□□ 0.03
TM9SF2-202ENST00000463709 ATXN8OSP0DMR3 200 aa15.19■□□□□ 0.02
TM9SF2-202ENST00000463709 CHRDL2Q6WN34 429 aa15.03■□□□□ -0
TM9SF2-202ENST00000463709 OSCARQ8IYS5 282 aa15.03■□□□□ -0
TM9SF2-202ENST00000463709 AKT1S1Q96B36 256 aa15.03■□□□□ -0
TM9SF2-202ENST00000463709 REM2Q8IYK8 340 aaPredicted RBP14.88□□□□□ -0.03
TM9SF2-202ENST00000463709 FBLN2P98095 1184 aa14.85□□□□□ -0.03
TM9SF2-202ENST00000463709 SPDYE2BA6NHP3 402 aa14.75□□□□□ -0.05
TM9SF2-202ENST00000463709 SPDYE6P0CI01 402 aa14.75□□□□□ -0.05
TM9SF2-202ENST00000463709 SPDYE2Q495Y8 402 aa14.75□□□□□ -0.05
TM9SF2-202ENST00000463709 MKRN4PQ13434 485 aaPredicted RBP14.73□□□□□ -0.05
TM9SF2-202ENST00000463709 PITPNM1O00562 1244 aa14.72□□□□□ -0.05
TM9SF2-202ENST00000463709 PIP4P2Q8N4L2 257 aa14.67□□□□□ -0.06
TM9SF2-202ENST00000463709 FXR2P51116 673 aaKnown RBP eCLIP14.6□□□□□ -0.07
TM9SF2-202ENST00000463709 ZNF692Q9BU19 519 aaPredicted RBP14.57□□□□□ -0.08
TM9SF2-202ENST00000463709 SSUH2Q9Y2M2 353 aa14.56□□□□□ -0.08
TM9SF2-202ENST00000463709 SPDYE1Q8NFV5 336 aaPredicted RBP14.49□□□□□ -0.09
TM9SF2-202ENST00000463709 SP7Q8TDD2 431 aaPredicted RBP14.45□□□□□ -0.1
TM9SF2-202ENST00000463709 CLEC11AQ9Y240 323 aa14.45□□□□□ -0.1
TM9SF2-202ENST00000463709 HAX1O00165 279 aa14.4□□□□□ -0.1
TM9SF2-202ENST00000463709 PABPN1Q86U42 306 aaKnown RBP eCLIP14.35□□□□□ -0.11
TM9SF2-202ENST00000463709 PRKAR2AP13861 404 aaKnown RBP14.33□□□□□ -0.12
TM9SF2-202ENST00000463709 PRR29P0C7W0 189 aa14.22□□□□□ -0.13
TM9SF2-202ENST00000463709 EVX2Q03828 476 aa14.22□□□□□ -0.13
TM9SF2-202ENST00000463709 CHADLQ6NUI6 762 aa14.17□□□□□ -0.14
TM9SF2-202ENST00000463709 C19orf67A6NJJ6 358 aa14.12□□□□□ -0.15
TM9SF2-202ENST00000463709 SPDYE4A6NLX3 237 aa14.05□□□□□ -0.16
TM9SF2-202ENST00000463709 FKBP8Q14318 412 aa14.01□□□□□ -0.17
TM9SF2-202ENST00000463709 STAG3Q9UJ98 1225 aa13.97□□□□□ -0.17
TM9SF2-202ENST00000463709 FARP1Q9Y4F1 1045 aaPredicted RBP13.97□□□□□ -0.17
TM9SF2-202ENST00000463709 GABBR2O75899 941 aa13.91□□□□□ -0.18
TM9SF2-202ENST00000463709 CD44P16070 742 aaKnown RBP13.88□□□□□ -0.19
TM9SF2-202ENST00000463709 CREBZFQ9NS37 354 aa13.88□□□□□ -0.19
TM9SF2-202ENST00000463709 PROM2Q8N271 834 aa13.73□□□□□ -0.21
TM9SF2-202ENST00000463709 CLCN6P51797 869 aa13.72□□□□□ -0.21
TM9SF2-202ENST00000463709 ZRANB1Q9UGI0 708 aa13.69□□□□□ -0.22
TM9SF2-202ENST00000463709 ZNF579Q8NAF0 562 aaKnown RBP13.68□□□□□ -0.22
TM9SF2-202ENST00000463709 MNX1P50219 401 aaPredicted RBP13.65□□□□□ -0.22
TM9SF2-202ENST00000463709 NPM1P06748 294 aaKnown RBP eCLIP13.62□□□□□ -0.23
TM9SF2-202ENST00000463709 POTEIP0CG38 1075 aa13.61□□□□□ -0.23
TM9SF2-202ENST00000463709 PAK3O75914 559 aaPredicted RBP13.59□□□□□ -0.23
TM9SF2-202ENST00000463709 LHX8Q68G74 356 aa13.55□□□□□ -0.24
TM9SF2-202ENST00000463709 DCBLD2Q96PD2 775 aa13.54□□□□□ -0.24
TM9SF2-202ENST00000463709 GALR2O43603 387 aaPredicted RBP13.5□□□□□ -0.25
TM9SF2-202ENST00000463709 PHF12Q96QT6 1004 aa13.5□□□□□ -0.25
TM9SF2-202ENST00000463709 PLEKHG5O94827 1062 aa13.39□□□□□ -0.27
TM9SF2-202ENST00000463709 MIER1Q8N108 512 aa13.39□□□□□ -0.27
TM9SF2-202ENST00000463709 TSPYL2Q9H2G4 693 aaPredicted RBP13.36□□□□□ -0.27
TM9SF2-202ENST00000463709 MS4A3Q96HJ5 214 aa13.32□□□□□ -0.28
TM9SF2-202ENST00000463709 CCDC61Q9Y6R9 512 aa13.32□□□□□ -0.28
TM9SF2-202ENST00000463709 PLCD3Q8N3E9 789 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 122.1 ms