RNA–Protein interactions for RNA: ENST00000463222.1

VRK2-208, Transcript of vaccinia related kinase 2, humanhuman

TSL 3

Gene VRK2, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2-208ENST00000463222 AEBP2Q6ZN18 517 aaPredicted RBP21.52■■□□□ 1.04
VRK2-208ENST00000463222 CHIC1Q5VXU3 224 aa20.37■□□□□ 0.85
VRK2-208ENST00000463222 SENP3Q9H4L4 574 aaPredicted RBP18.44■□□□□ 0.54
VRK2-208ENST00000463222 PHF23Q9BUL5 403 aaPredicted RBP18.12■□□□□ 0.49
VRK2-208ENST00000463222 FOXD1Q16676 465 aa17.14■□□□□ 0.33
VRK2-208ENST00000463222 PLPPR3Q6T4P5 718 aa16.23■□□□□ 0.19
VRK2-208ENST00000463222 MSH5O43196 834 aa16.16■□□□□ 0.18
VRK2-208ENST00000463222 PIAS4Q8N2W9 510 aaPredicted RBP16■□□□□ 0.15
VRK2-208ENST00000463222 POTEDQ86YR6 584 aa15.92■□□□□ 0.14
VRK2-208ENST00000463222 PPP6R1Q9UPN7 881 aa15.9■□□□□ 0.14
VRK2-208ENST00000463222 ADRA2BP18089 450 aa15.83■□□□□ 0.12
VRK2-208ENST00000463222 DMRT2Q9Y5R5 561 aa14.6□□□□□ -0.07
VRK2-208ENST00000463222 SCAF1Q9H7N4 1312 aaKnown RBP14.58□□□□□ -0.08
VRK2-208ENST00000463222 MAPK8IP2Q13387 824 aaPredicted RBP14.55□□□□□ -0.08
VRK2-208ENST00000463222 PPP4R3CPQ6ZMV5 832 aa14.16□□□□□ -0.14
VRK2-208ENST00000463222 HOXD11P31277 338 aaPredicted RBP14.03□□□□□ -0.16
VRK2-208ENST00000463222 CNKSR2Q8WXI2 1034 aa13.97□□□□□ -0.17
VRK2-208ENST00000463222 DCAF8L1A6NGE4 600 aa13.89□□□□□ -0.19
VRK2-208ENST00000463222 RNF216Q9NWF9 866 aaPredicted RBP13.89□□□□□ -0.19
VRK2-208ENST00000463222 CACNB1Q02641 598 aaPredicted RBP13.86□□□□□ -0.19
VRK2-208ENST00000463222 RNF39Q9H2S5 420 aa13.77□□□□□ -0.21
VRK2-208ENST00000463222 DNAJC5BQ9UF47 199 aa13.67□□□□□ -0.22
VRK2-208ENST00000463222 NCBP3Q53F19 620 aaKnown RBP13.62□□□□□ -0.23
VRK2-208ENST00000463222 KCNA4P22459 653 aa13.6□□□□□ -0.23
VRK2-208ENST00000463222 C1QBPQ07021 282 aaKnown RBP13.57□□□□□ -0.24
VRK2-208ENST00000463222 NPM3O75607 178 aaKnown RBP13.39□□□□□ -0.27
VRK2-208ENST00000463222 EHMT2Q96KQ7 1210 aa13.37□□□□□ -0.27
VRK2-208ENST00000463222 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.3□□□□□ -0.28
VRK2-208ENST00000463222 U3KPZ7 1027 aaPredicted RBP13.04□□□□□ -0.32
VRK2-208ENST00000463222 SLC4A1APQ9BWU0 796 aaKnown RBP13.03□□□□□ -0.32
VRK2-208ENST00000463222 CSRNP3Q8WYN3 585 aa12.92□□□□□ -0.34
VRK2-208ENST00000463222 SPINK5Q9NQ38 1064 aaPredicted RBP12.83□□□□□ -0.36
VRK2-208ENST00000463222 CAPN15O75808 1086 aa12.82□□□□□ -0.36
VRK2-208ENST00000463222 SLC4A2P04920 1241 aa12.82□□□□□ -0.36
VRK2-208ENST00000463222 DSG3P32926 999 aa12.82□□□□□ -0.36
VRK2-208ENST00000463222 APLP2Q06481 763 aa12.72□□□□□ -0.37
VRK2-208ENST00000463222 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.68□□□□□ -0.38
VRK2-208ENST00000463222 HNRNPUL2Q1KMD3 747 aaKnown RBP12.68□□□□□ -0.38
VRK2-208ENST00000463222 ZNF219Q9P2Y4 722 aaPredicted RBP12.65□□□□□ -0.38
VRK2-208ENST00000463222 SAMD1Q6SPF0 538 aaPredicted RBP12.59□□□□□ -0.39
VRK2-208ENST00000463222 TRHP20396 242 aaPredicted RBP12.57□□□□□ -0.4
VRK2-208ENST00000463222 ZBTB22O15209 634 aa12.53□□□□□ -0.4
VRK2-208ENST00000463222 ABCB7O75027 752 aa12.49□□□□□ -0.41
VRK2-208ENST00000463222 POTEHQ6S545 545 aa12.46□□□□□ -0.41
VRK2-208ENST00000463222 MYCNP04198 464 aaPredicted RBP12.43□□□□□ -0.42
VRK2-208ENST00000463222 RBM42Q9BTD8 480 aaKnown RBP12.29□□□□□ -0.44
VRK2-208ENST00000463222 FOXD4L1Q9NU39 408 aa12.29□□□□□ -0.44
VRK2-208ENST00000463222 POLA2Q14181 598 aa12.23□□□□□ -0.45
VRK2-208ENST00000463222 ATF5Q9Y2D1 282 aaPredicted RBP12.07□□□□□ -0.48
VRK2-208ENST00000463222 ZBTB12Q9Y330 459 aaPredicted RBP12.07□□□□□ -0.48
VRK2-208ENST00000463222 CHRDL2Q6WN34 429 aa12.02□□□□□ -0.49
VRK2-208ENST00000463222 AKT1S1Q96B36 256 aa11.96□□□□□ -0.49
VRK2-208ENST00000463222 ATXN8OSP0DMR3 200 aa11.91□□□□□ -0.5
VRK2-208ENST00000463222 OSCARQ8IYS5 282 aa11.86□□□□□ -0.51
VRK2-208ENST00000463222 REM2Q8IYK8 340 aaPredicted RBP11.81□□□□□ -0.52
VRK2-208ENST00000463222 PIP4P2Q8N4L2 257 aa11.7□□□□□ -0.54
VRK2-208ENST00000463222 PITPNM1O00562 1244 aa11.69□□□□□ -0.54
VRK2-208ENST00000463222 SPDYE2BA6NHP3 402 aa11.67□□□□□ -0.54
VRK2-208ENST00000463222 SPDYE6P0CI01 402 aa11.67□□□□□ -0.54
VRK2-208ENST00000463222 FBLN2P98095 1184 aa11.67□□□□□ -0.54
VRK2-208ENST00000463222 SPDYE2Q495Y8 402 aa11.67□□□□□ -0.54
VRK2-208ENST00000463222 FKBP8Q14318 412 aa11.65□□□□□ -0.54
VRK2-208ENST00000463222 SP7Q8TDD2 431 aaPredicted RBP11.64□□□□□ -0.55
VRK2-208ENST00000463222 FXR2P51116 673 aaKnown RBP eCLIP11.63□□□□□ -0.55
VRK2-208ENST00000463222 RTN4Q9NQC3 1192 aaKnown RBP11.62□□□□□ -0.55
VRK2-208ENST00000463222 MKRN4PQ13434 485 aaPredicted RBP11.55□□□□□ -0.56
VRK2-208ENST00000463222 AMER1Q5JTC6 1135 aaPredicted RBP11.54□□□□□ -0.56
VRK2-208ENST00000463222 SSUH2Q9Y2M2 353 aa11.5□□□□□ -0.57
VRK2-208ENST00000463222 HAX1O00165 279 aa11.48□□□□□ -0.57
VRK2-208ENST00000463222 SPDYE1Q8NFV5 336 aaPredicted RBP11.48□□□□□ -0.57
VRK2-208ENST00000463222 ZNF692Q9BU19 519 aaPredicted RBP11.44□□□□□ -0.58
VRK2-208ENST00000463222 SLC24A1O60721 1099 aa11.39□□□□□ -0.59
VRK2-208ENST00000463222 CLEC11AQ9Y240 323 aa11.37□□□□□ -0.59
VRK2-208ENST00000463222 PRKAR2AP13861 404 aaKnown RBP11.36□□□□□ -0.59
VRK2-208ENST00000463222 EVX2Q03828 476 aa11.31□□□□□ -0.6
VRK2-208ENST00000463222 C19orf67A6NJJ6 358 aa11.27□□□□□ -0.61
VRK2-208ENST00000463222 PABPN1Q86U42 306 aaKnown RBP eCLIP11.26□□□□□ -0.61
VRK2-208ENST00000463222 PRR29P0C7W0 189 aa11.2□□□□□ -0.62
VRK2-208ENST00000463222 CHADLQ6NUI6 762 aa11.16□□□□□ -0.62
VRK2-208ENST00000463222 GABBR2O75899 941 aa11.09□□□□□ -0.63
VRK2-208ENST00000463222 SPDYE4A6NLX3 237 aa11.06□□□□□ -0.64
VRK2-208ENST00000463222 FARP1Q9Y4F1 1045 aaPredicted RBP11.05□□□□□ -0.64
VRK2-208ENST00000463222 CD44P16070 742 aaKnown RBP11.01□□□□□ -0.65
VRK2-208ENST00000463222 CLCN6P51797 869 aa11□□□□□ -0.65
VRK2-208ENST00000463222 STAG3Q9UJ98 1225 aa10.99□□□□□ -0.65
VRK2-208ENST00000463222 FBXO3Q9UK99 471 aa10.99□□□□□ -0.65
VRK2-208ENST00000463222 CREBZFQ9NS37 354 aa10.92□□□□□ -0.66
VRK2-208ENST00000463222 PROM2Q8N271 834 aa10.9□□□□□ -0.66
VRK2-208ENST00000463222 ZNF579Q8NAF0 562 aaKnown RBP10.89□□□□□ -0.67
VRK2-208ENST00000463222 LHX8Q68G74 356 aa10.88□□□□□ -0.67
VRK2-208ENST00000463222 VASPP50552 380 aaPredicted RBP10.87□□□□□ -0.67
VRK2-208ENST00000463222 POTEIP0CG38 1075 aa10.85□□□□□ -0.67
VRK2-208ENST00000463222 IFNLR1Q8IU57 520 aaPredicted RBP10.81□□□□□ -0.68
VRK2-208ENST00000463222 ZRANB1Q9UGI0 708 aa10.81□□□□□ -0.68
VRK2-208ENST00000463222 DCBLD2Q96PD2 775 aa10.76□□□□□ -0.69
VRK2-208ENST00000463222 PAK3O75914 559 aaPredicted RBP10.74□□□□□ -0.69
VRK2-208ENST00000463222 MNX1P50219 401 aaPredicted RBP10.74□□□□□ -0.69
VRK2-208ENST00000463222 NPM1P06748 294 aaKnown RBP eCLIP10.73□□□□□ -0.69
VRK2-208ENST00000463222 DCAF8L2P0C7V8 631 aa10.72□□□□□ -0.69
VRK2-208ENST00000463222 GALR2O43603 387 aaPredicted RBP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms