RNA–Protein interactions for RNA: ENST00000463011.5

GPNMB-205, Transcript of glycoprotein nmb, humanhuman

TSL 3

Gene GPNMB, Length 378 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-205ENST00000463011 AEBP2Q6ZN18 517 aaPredicted RBP14.08□□□□□ -0.16
GPNMB-205ENST00000463011 CHIC1Q5VXU3 224 aa14.02□□□□□ -0.17
GPNMB-205ENST00000463011 POTEDQ86YR6 584 aa12.43□□□□□ -0.42
GPNMB-205ENST00000463011 PHF23Q9BUL5 403 aaPredicted RBP12.43□□□□□ -0.42
GPNMB-205ENST00000463011 SENP3Q9H4L4 574 aaPredicted RBP12.12□□□□□ -0.47
GPNMB-205ENST00000463011 PLPPR3Q6T4P5 718 aa11.62□□□□□ -0.55
GPNMB-205ENST00000463011 FOXD1Q16676 465 aa11.44□□□□□ -0.58
GPNMB-205ENST00000463011 MSH5O43196 834 aa11.03□□□□□ -0.64
GPNMB-205ENST00000463011 ADRA2BP18089 450 aa10.94□□□□□ -0.66
GPNMB-205ENST00000463011 PPP6R1Q9UPN7 881 aa10.81□□□□□ -0.68
GPNMB-205ENST00000463011 KCNA4P22459 653 aa10.73□□□□□ -0.69
GPNMB-205ENST00000463011 EHMT2Q96KQ7 1210 aa10.69□□□□□ -0.7
GPNMB-205ENST00000463011 PIAS4Q8N2W9 510 aaPredicted RBP10.45□□□□□ -0.74
GPNMB-205ENST00000463011 PPP4R3CPQ6ZMV5 832 aa10.34□□□□□ -0.75
GPNMB-205ENST00000463011 SLC4A1APQ9BWU0 796 aaKnown RBP10.31□□□□□ -0.76
GPNMB-205ENST00000463011 CSRNP3Q8WYN3 585 aa10.28□□□□□ -0.76
GPNMB-205ENST00000463011 NCBP3Q53F19 620 aaKnown RBP10.19□□□□□ -0.78
GPNMB-205ENST00000463011 CACNB1Q02641 598 aaPredicted RBP10.09□□□□□ -0.79
GPNMB-205ENST00000463011 NPM3O75607 178 aaKnown RBP10.07□□□□□ -0.8
GPNMB-205ENST00000463011 CNKSR2Q8WXI2 1034 aa9.9□□□□□ -0.82
GPNMB-205ENST00000463011 ZBTB22O15209 634 aa9.89□□□□□ -0.83
GPNMB-205ENST00000463011 SCAF1Q9H7N4 1312 aaKnown RBP9.84□□□□□ -0.83
GPNMB-205ENST00000463011 MAPK8IP2Q13387 824 aaPredicted RBP9.69□□□□□ -0.86
GPNMB-205ENST00000463011 FOXD4L1Q9NU39 408 aa9.69□□□□□ -0.86
GPNMB-205ENST00000463011 DNAJC5BQ9UF47 199 aa9.6□□□□□ -0.87
GPNMB-205ENST00000463011 RNF216Q9NWF9 866 aaPredicted RBP9.56□□□□□ -0.88
GPNMB-205ENST00000463011 POTEHQ6S545 545 aa9.55□□□□□ -0.88
GPNMB-205ENST00000463011 DMRT2Q9Y5R5 561 aa9.46□□□□□ -0.9
GPNMB-205ENST00000463011 RTN4Q9NQC3 1192 aaKnown RBP9.42□□□□□ -0.9
GPNMB-205ENST00000463011 SLC4A2P04920 1241 aa9.39□□□□□ -0.91
GPNMB-205ENST00000463011 HOXD11P31277 338 aaPredicted RBP9.38□□□□□ -0.91
GPNMB-205ENST00000463011 SLC24A1O60721 1099 aa9.37□□□□□ -0.91
GPNMB-205ENST00000463011 AMER1Q5JTC6 1135 aaPredicted RBP9.36□□□□□ -0.91
GPNMB-205ENST00000463011 RNF39Q9H2S5 420 aa9.34□□□□□ -0.91
GPNMB-205ENST00000463011 FKBP8Q14318 412 aa9.27□□□□□ -0.93
GPNMB-205ENST00000463011 MYCNP04198 464 aaPredicted RBP9.26□□□□□ -0.93
GPNMB-205ENST00000463011 ATXN8OSP0DMR3 200 aa9.26□□□□□ -0.93
GPNMB-205ENST00000463011 DCAF8L1A6NGE4 600 aa9.16□□□□□ -0.94
GPNMB-205ENST00000463011 C1QBPQ07021 282 aaKnown RBP9.14□□□□□ -0.95
GPNMB-205ENST00000463011 ATF5Q9Y2D1 282 aaPredicted RBP9.04□□□□□ -0.96
GPNMB-205ENST00000463011 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.98□□□□□ -0.97
GPNMB-205ENST00000463011 SAMD1Q6SPF0 538 aaPredicted RBP8.92□□□□□ -0.98
GPNMB-205ENST00000463011 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.91□□□□□ -0.98
GPNMB-205ENST00000463011 HNRNPUL2Q1KMD3 747 aaKnown RBP8.91□□□□□ -0.98
GPNMB-205ENST00000463011 U3KPZ7 1027 aaPredicted RBP8.88□□□□□ -0.99
GPNMB-205ENST00000463011 ZNF219Q9P2Y4 722 aaPredicted RBP8.8□□□□□ -1
GPNMB-205ENST00000463011 FBXO3Q9UK99 471 aa8.74□□□□□ -1.01
GPNMB-205ENST00000463011 SPDYE4A6NLX3 237 aa8.72□□□□□ -1.01
GPNMB-205ENST00000463011 APLP2Q06481 763 aa8.67□□□□□ -1.02
GPNMB-205ENST00000463011 MKRN4PQ13434 485 aaPredicted RBP8.66□□□□□ -1.02
GPNMB-205ENST00000463011 PLCB2Q00722 1185 aa8.65□□□□□ -1.02
GPNMB-205ENST00000463011 VASPP50552 380 aaPredicted RBP8.63□□□□□ -1.03
GPNMB-205ENST00000463011 PROM2Q8N271 834 aa8.6□□□□□ -1.03
GPNMB-205ENST00000463011 DCAF8L2P0C7V8 631 aa8.59□□□□□ -1.03
GPNMB-205ENST00000463011 FBLN2P98095 1184 aa8.57□□□□□ -1.04
GPNMB-205ENST00000463011 IFNLR1Q8IU57 520 aaPredicted RBP8.57□□□□□ -1.04
GPNMB-205ENST00000463011 HAP1P54257 671 aaPredicted RBP8.56□□□□□ -1.04
GPNMB-205ENST00000463011 TRHP20396 242 aaPredicted RBP8.54□□□□□ -1.04
GPNMB-205ENST00000463011 POLA2Q14181 598 aa8.51□□□□□ -1.05
GPNMB-205ENST00000463011 SPINK5Q9NQ38 1064 aaPredicted RBP8.5□□□□□ -1.05
GPNMB-205ENST00000463011 PKD2Q13563 968 aa8.49□□□□□ -1.05
GPNMB-205ENST00000463011 SP7Q8TDD2 431 aaPredicted RBP8.49□□□□□ -1.05
GPNMB-205ENST00000463011 DSG3P32926 999 aa8.44□□□□□ -1.06
GPNMB-205ENST00000463011 CAPN15O75808 1086 aa8.43□□□□□ -1.06
GPNMB-205ENST00000463011 BCANQ96GW7 911 aa8.41□□□□□ -1.06
GPNMB-205ENST00000463011 VSIG10Q8N0Z9 540 aa8.4□□□□□ -1.06
GPNMB-205ENST00000463011 PRKCSHP14314 528 aaPredicted RBP8.39□□□□□ -1.07
GPNMB-205ENST00000463011 KLHL34Q8N239 644 aa8.39□□□□□ -1.07
GPNMB-205ENST00000463011 SPOCK2Q92563 424 aa8.37□□□□□ -1.07
GPNMB-205ENST00000463011 ECM2O94769 699 aaPredicted RBP8.35□□□□□ -1.07
GPNMB-205ENST00000463011 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.35□□□□□ -1.07
GPNMB-205ENST00000463011 ABCB7O75027 752 aa8.34□□□□□ -1.07
GPNMB-205ENST00000463011 BBXQ8WY36 941 aaPredicted RBP8.34□□□□□ -1.07
GPNMB-205ENST00000463011 ZBTB12Q9Y330 459 aaPredicted RBP8.34□□□□□ -1.07
GPNMB-205ENST00000463011 NPM1P06748 294 aaKnown RBP eCLIP8.32□□□□□ -1.08
GPNMB-205ENST00000463011 PAXIP1Q6ZW49 1069 aaPredicted RBP8.32□□□□□ -1.08
GPNMB-205ENST00000463011 TAOK2Q9UL54 1235 aa8.32□□□□□ -1.08
GPNMB-205ENST00000463011 CFAP44Q96MT7 982 aa8.31□□□□□ -1.08
GPNMB-205ENST00000463011 KDM2AQ9Y2K7 1162 aa8.31□□□□□ -1.08
GPNMB-205ENST00000463011 PLSCR2Q9NRY7 297 aa8.29□□□□□ -1.08
GPNMB-205ENST00000463011 CHRDL2Q6WN34 429 aa8.28□□□□□ -1.08
GPNMB-205ENST00000463011 PLCD3Q8N3E9 789 aa8.28□□□□□ -1.08
GPNMB-205ENST00000463011 ZNF692Q9BU19 519 aaPredicted RBP8.28□□□□□ -1.08
GPNMB-205ENST00000463011 STAG3Q9UJ98 1225 aa8.27□□□□□ -1.09
GPNMB-205ENST00000463011 RGL2O15211 777 aa8.25□□□□□ -1.09
GPNMB-205ENST00000463011 MIER1Q8N108 512 aa8.24□□□□□ -1.09
GPNMB-205ENST00000463011 TPRNQ4KMQ1 711 aa8.22□□□□□ -1.09
GPNMB-205ENST00000463011 SPRYD3Q8NCJ5 442 aa8.21□□□□□ -1.1
GPNMB-205ENST00000463011 TSHZ2Q9NRE2 1034 aa8.2□□□□□ -1.1
GPNMB-205ENST00000463011 PABPN1Q86U42 306 aaKnown RBP eCLIP8.19□□□□□ -1.1
GPNMB-205ENST00000463011 OSCARQ8IYS5 282 aa8.19□□□□□ -1.1
GPNMB-205ENST00000463011 SPDYE2BA6NHP3 402 aa8.18□□□□□ -1.1
GPNMB-205ENST00000463011 SPDYE6P0CI01 402 aa8.18□□□□□ -1.1
GPNMB-205ENST00000463011 SPDYE2Q495Y8 402 aa8.18□□□□□ -1.1
GPNMB-205ENST00000463011 CIZ1Q9ULV3 898 aaPredicted RBP8.18□□□□□ -1.1
GPNMB-205ENST00000463011 SSUH2Q9Y2M2 353 aa8.18□□□□□ -1.1
GPNMB-205ENST00000463011 CHGAP10645 457 aaKnown RBP8.16□□□□□ -1.1
GPNMB-205ENST00000463011 PLEKHG5O94827 1062 aa8.1□□□□□ -1.11
GPNMB-205ENST00000463011 ZBTB47Q9UFB7 747 aaPredicted RBP8.08□□□□□ -1.12
GPNMB-205ENST00000463011 RBM42Q9BTD8 480 aaKnown RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms