RNA–Protein interactions for RNA: ENST00000461522.1

UBA3-204, Transcript of ubiquitin like modifier activating enzyme 3, humanhuman

TSL 2

Gene UBA3, Length 693 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBA3-204ENST00000461522 AEBP2Q6ZN18 517 aaPredicted RBP27.63■■■□□ 2.01
UBA3-204ENST00000461522 CHIC1Q5VXU3 224 aa26.64■■□□□ 1.86
UBA3-204ENST00000461522 SENP3Q9H4L4 574 aaPredicted RBP23.49■■□□□ 1.35
UBA3-204ENST00000461522 PHF23Q9BUL5 403 aaPredicted RBP23.39■■□□□ 1.33
UBA3-204ENST00000461522 FOXD1Q16676 465 aa21.84■■□□□ 1.09
UBA3-204ENST00000461522 PLPPR3Q6T4P5 718 aa21.46■■□□□ 1.03
UBA3-204ENST00000461522 PPP6R1Q9UPN7 881 aa20.75■□□□□ 0.91
UBA3-204ENST00000461522 ADRA2BP18089 450 aa20.69■□□□□ 0.9
UBA3-204ENST00000461522 PIAS4Q8N2W9 510 aaPredicted RBP20.49■□□□□ 0.87
UBA3-204ENST00000461522 MSH5O43196 834 aa20.28■□□□□ 0.84
UBA3-204ENST00000461522 POTEDQ86YR6 584 aa19.08■□□□□ 0.64
UBA3-204ENST00000461522 SCAF1Q9H7N4 1312 aaKnown RBP18.93■□□□□ 0.62
UBA3-204ENST00000461522 MAPK8IP2Q13387 824 aaPredicted RBP18.87■□□□□ 0.61
UBA3-204ENST00000461522 PPP4R3CPQ6ZMV5 832 aa18.86■□□□□ 0.61
UBA3-204ENST00000461522 DMRT2Q9Y5R5 561 aa18.71■□□□□ 0.59
UBA3-204ENST00000461522 CNKSR2Q8WXI2 1034 aa18.42■□□□□ 0.54
UBA3-204ENST00000461522 NCBP3Q53F19 620 aaKnown RBP18.25■□□□□ 0.51
UBA3-204ENST00000461522 HOXD11P31277 338 aaPredicted RBP18.19■□□□□ 0.5
UBA3-204ENST00000461522 RNF216Q9NWF9 866 aaPredicted RBP18.16■□□□□ 0.5
UBA3-204ENST00000461522 KCNA4P22459 653 aa18.03■□□□□ 0.48
UBA3-204ENST00000461522 NPM3O75607 178 aaKnown RBP18.01■□□□□ 0.47
UBA3-204ENST00000461522 DCAF8L1A6NGE4 600 aa17.84■□□□□ 0.45
UBA3-204ENST00000461522 DNAJC5BQ9UF47 199 aa17.6■□□□□ 0.41
UBA3-204ENST00000461522 RNF39Q9H2S5 420 aa17.36■□□□□ 0.37
UBA3-204ENST00000461522 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.28■□□□□ 0.36
UBA3-204ENST00000461522 C1QBPQ07021 282 aaKnown RBP17.12■□□□□ 0.33
UBA3-204ENST00000461522 CACNB1Q02641 598 aaPredicted RBP17.11■□□□□ 0.33
UBA3-204ENST00000461522 SLC4A2P04920 1241 aa17.1■□□□□ 0.33
UBA3-204ENST00000461522 SLC4A1APQ9BWU0 796 aaKnown RBP17.09■□□□□ 0.33
UBA3-204ENST00000461522 U3KPZ7 1027 aaPredicted RBP17■□□□□ 0.31
UBA3-204ENST00000461522 FOXD4L1Q9NU39 408 aa16.7■□□□□ 0.26
UBA3-204ENST00000461522 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.65■□□□□ 0.26
UBA3-204ENST00000461522 HNRNPUL2Q1KMD3 747 aaKnown RBP16.65■□□□□ 0.26
UBA3-204ENST00000461522 MYCNP04198 464 aaPredicted RBP16.64■□□□□ 0.25
UBA3-204ENST00000461522 SPINK5Q9NQ38 1064 aaPredicted RBP16.61■□□□□ 0.25
UBA3-204ENST00000461522 ZBTB22O15209 634 aa16.6■□□□□ 0.25
UBA3-204ENST00000461522 SAMD1Q6SPF0 538 aaPredicted RBP16.58■□□□□ 0.24
UBA3-204ENST00000461522 APLP2Q06481 763 aa16.55■□□□□ 0.24
UBA3-204ENST00000461522 CAPN15O75808 1086 aa16.54■□□□□ 0.24
UBA3-204ENST00000461522 ZNF219Q9P2Y4 722 aaPredicted RBP16.39■□□□□ 0.21
UBA3-204ENST00000461522 DSG3P32926 999 aa16.38■□□□□ 0.21
UBA3-204ENST00000461522 TRHP20396 242 aaPredicted RBP16.37■□□□□ 0.21
UBA3-204ENST00000461522 ATF5Q9Y2D1 282 aaPredicted RBP16.23■□□□□ 0.19
UBA3-204ENST00000461522 CSRNP3Q8WYN3 585 aa16.21■□□□□ 0.19
UBA3-204ENST00000461522 ABCB7O75027 752 aa16.2■□□□□ 0.18
UBA3-204ENST00000461522 EHMT2Q96KQ7 1210 aa16.18■□□□□ 0.18
UBA3-204ENST00000461522 ATXN8OSP0DMR3 200 aa16.16■□□□□ 0.18
UBA3-204ENST00000461522 POLA2Q14181 598 aa16.05■□□□□ 0.16
UBA3-204ENST00000461522 ZBTB12Q9Y330 459 aaPredicted RBP15.77■□□□□ 0.12
UBA3-204ENST00000461522 RBM42Q9BTD8 480 aaKnown RBP15.61■□□□□ 0.09
UBA3-204ENST00000461522 FBLN2P98095 1184 aa15.54■□□□□ 0.08
UBA3-204ENST00000461522 OSCARQ8IYS5 282 aa15.53■□□□□ 0.08
UBA3-204ENST00000461522 MKRN4PQ13434 485 aaPredicted RBP15.52■□□□□ 0.08
UBA3-204ENST00000461522 AKT1S1Q96B36 256 aa15.35■□□□□ 0.05
UBA3-204ENST00000461522 SPDYE2BA6NHP3 402 aa15.32■□□□□ 0.04
UBA3-204ENST00000461522 SPDYE6P0CI01 402 aa15.32■□□□□ 0.04
UBA3-204ENST00000461522 SPDYE2Q495Y8 402 aa15.32■□□□□ 0.04
UBA3-204ENST00000461522 REM2Q8IYK8 340 aaPredicted RBP15.2■□□□□ 0.02
UBA3-204ENST00000461522 SSUH2Q9Y2M2 353 aa15.19■□□□□ 0.02
UBA3-204ENST00000461522 ZNF692Q9BU19 519 aaPredicted RBP15.18■□□□□ 0.02
UBA3-204ENST00000461522 CHRDL2Q6WN34 429 aa15.1■□□□□ 0.01
UBA3-204ENST00000461522 PITPNM1O00562 1244 aa15.04■□□□□ -0
UBA3-204ENST00000461522 POTEHQ6S545 545 aa15.03■□□□□ -0
UBA3-204ENST00000461522 PABPN1Q86U42 306 aaKnown RBP eCLIP14.98□□□□□ -0.01
UBA3-204ENST00000461522 SPDYE4A6NLX3 237 aa14.97□□□□□ -0.01
UBA3-204ENST00000461522 SPDYE1Q8NFV5 336 aaPredicted RBP14.94□□□□□ -0.02
UBA3-204ENST00000461522 CLEC11AQ9Y240 323 aa14.85□□□□□ -0.03
UBA3-204ENST00000461522 FXR2P51116 673 aaKnown RBP eCLIP14.84□□□□□ -0.03
UBA3-204ENST00000461522 PIP4P2Q8N4L2 257 aa14.84□□□□□ -0.03
UBA3-204ENST00000461522 PROM2Q8N271 834 aa14.73□□□□□ -0.05
UBA3-204ENST00000461522 PRR29P0C7W0 189 aa14.69□□□□□ -0.06
UBA3-204ENST00000461522 STAG3Q9UJ98 1225 aa14.66□□□□□ -0.06
UBA3-204ENST00000461522 PRKAR2AP13861 404 aaKnown RBP14.64□□□□□ -0.07
UBA3-204ENST00000461522 FKBP8Q14318 412 aa14.64□□□□□ -0.07
UBA3-204ENST00000461522 CHADLQ6NUI6 762 aa14.55□□□□□ -0.08
UBA3-204ENST00000461522 CREBZFQ9NS37 354 aa14.46□□□□□ -0.09
UBA3-204ENST00000461522 HAX1O00165 279 aa14.42□□□□□ -0.1
UBA3-204ENST00000461522 FARP1Q9Y4F1 1045 aaPredicted RBP14.4□□□□□ -0.1
UBA3-204ENST00000461522 C19orf67A6NJJ6 358 aa14.35□□□□□ -0.11
UBA3-204ENST00000461522 EVX2Q03828 476 aa14.31□□□□□ -0.12
UBA3-204ENST00000461522 SP7Q8TDD2 431 aaPredicted RBP14.29□□□□□ -0.12
UBA3-204ENST00000461522 MNX1P50219 401 aaPredicted RBP14.28□□□□□ -0.12
UBA3-204ENST00000461522 FBXO3Q9UK99 471 aa14.23□□□□□ -0.13
UBA3-204ENST00000461522 MIER1Q8N108 512 aa14.21□□□□□ -0.13
UBA3-204ENST00000461522 CD44P16070 742 aaKnown RBP14.19□□□□□ -0.14
UBA3-204ENST00000461522 NPM1P06748 294 aaKnown RBP eCLIP14.18□□□□□ -0.14
UBA3-204ENST00000461522 PLEKHG5O94827 1062 aa14.16□□□□□ -0.14
UBA3-204ENST00000461522 PLCD3Q8N3E9 789 aa14.15□□□□□ -0.14
UBA3-204ENST00000461522 ZRANB1Q9UGI0 708 aa14.06□□□□□ -0.16
UBA3-204ENST00000461522 VASPP50552 380 aaPredicted RBP14.05□□□□□ -0.16
UBA3-204ENST00000461522 ZBTB47Q9UFB7 747 aaPredicted RBP14.04□□□□□ -0.16
UBA3-204ENST00000461522 PAK3O75914 559 aaPredicted RBP14.02□□□□□ -0.17
UBA3-204ENST00000461522 ZNF579Q8NAF0 562 aaKnown RBP14.02□□□□□ -0.17
UBA3-204ENST00000461522 GABBR2O75899 941 aa14.01□□□□□ -0.17
UBA3-204ENST00000461522 CLCN6P51797 869 aa13.95□□□□□ -0.18
UBA3-204ENST00000461522 RASEFQ8IZ41 740 aa13.94□□□□□ -0.18
UBA3-204ENST00000461522 NUBP1P53384 320 aa13.93□□□□□ -0.18
UBA3-204ENST00000461522 TSPYL2Q9H2G4 693 aaPredicted RBP13.92□□□□□ -0.18
UBA3-204ENST00000461522 PHF12Q96QT6 1004 aa13.91□□□□□ -0.18
UBA3-204ENST00000461522 CCDC61Q9Y6R9 512 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms