RNA–Protein interactions for RNA: ENST00000461132.1

SPTLC1-203, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 808 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-203ENST00000461132 AEBP2Q6ZN18 517 aaPredicted RBP23.38■■□□□ 1.33
SPTLC1-203ENST00000461132 CHIC1Q5VXU3 224 aa22.39■■□□□ 1.17
SPTLC1-203ENST00000461132 SENP3Q9H4L4 574 aaPredicted RBP20.1■□□□□ 0.81
SPTLC1-203ENST00000461132 PHF23Q9BUL5 403 aaPredicted RBP19.79■□□□□ 0.76
SPTLC1-203ENST00000461132 FOXD1Q16676 465 aa18.61■□□□□ 0.57
SPTLC1-203ENST00000461132 PLPPR3Q6T4P5 718 aa18.03■□□□□ 0.48
SPTLC1-203ENST00000461132 PIAS4Q8N2W9 510 aaPredicted RBP17.54■□□□□ 0.4
SPTLC1-203ENST00000461132 MSH5O43196 834 aa17.52■□□□□ 0.4
SPTLC1-203ENST00000461132 ADRA2BP18089 450 aa17.45■□□□□ 0.38
SPTLC1-203ENST00000461132 PPP6R1Q9UPN7 881 aa17.43■□□□□ 0.38
SPTLC1-203ENST00000461132 POTEDQ86YR6 584 aa16.81■□□□□ 0.28
SPTLC1-203ENST00000461132 SCAF1Q9H7N4 1312 aaKnown RBP16.14■□□□□ 0.17
SPTLC1-203ENST00000461132 MAPK8IP2Q13387 824 aaPredicted RBP15.97■□□□□ 0.15
SPTLC1-203ENST00000461132 DMRT2Q9Y5R5 561 aa15.89■□□□□ 0.13
SPTLC1-203ENST00000461132 PPP4R3CPQ6ZMV5 832 aa15.77■□□□□ 0.12
SPTLC1-203ENST00000461132 CNKSR2Q8WXI2 1034 aa15.49■□□□□ 0.07
SPTLC1-203ENST00000461132 DCAF8L1A6NGE4 600 aa15.41■□□□□ 0.06
SPTLC1-203ENST00000461132 HOXD11P31277 338 aaPredicted RBP15.33■□□□□ 0.04
SPTLC1-203ENST00000461132 NCBP3Q53F19 620 aaKnown RBP15.32■□□□□ 0.04
SPTLC1-203ENST00000461132 RNF216Q9NWF9 866 aaPredicted RBP15.3■□□□□ 0.04
SPTLC1-203ENST00000461132 CACNB1Q02641 598 aaPredicted RBP14.99□□□□□ -0.01
SPTLC1-203ENST00000461132 NPM3O75607 178 aaKnown RBP14.95□□□□□ -0.02
SPTLC1-203ENST00000461132 RNF39Q9H2S5 420 aa14.86□□□□□ -0.03
SPTLC1-203ENST00000461132 DNAJC5BQ9UF47 199 aa14.8□□□□□ -0.04
SPTLC1-203ENST00000461132 KCNA4P22459 653 aa14.75□□□□□ -0.05
SPTLC1-203ENST00000461132 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.75□□□□□ -0.05
SPTLC1-203ENST00000461132 C1QBPQ07021 282 aaKnown RBP14.72□□□□□ -0.05
SPTLC1-203ENST00000461132 U3KPZ7 1027 aaPredicted RBP14.31□□□□□ -0.12
SPTLC1-203ENST00000461132 CAPN15O75808 1086 aa14.18□□□□□ -0.14
SPTLC1-203ENST00000461132 SLC4A2P04920 1241 aa14.18□□□□□ -0.14
SPTLC1-203ENST00000461132 APLP2Q06481 763 aa14.15□□□□□ -0.14
SPTLC1-203ENST00000461132 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.13□□□□□ -0.15
SPTLC1-203ENST00000461132 HNRNPUL2Q1KMD3 747 aaKnown RBP14.13□□□□□ -0.15
SPTLC1-203ENST00000461132 SPINK5Q9NQ38 1064 aaPredicted RBP14.08□□□□□ -0.16
SPTLC1-203ENST00000461132 SLC4A1APQ9BWU0 796 aaKnown RBP14.03□□□□□ -0.16
SPTLC1-203ENST00000461132 SAMD1Q6SPF0 538 aaPredicted RBP14□□□□□ -0.17
SPTLC1-203ENST00000461132 TRHP20396 242 aaPredicted RBP13.97□□□□□ -0.17
SPTLC1-203ENST00000461132 ZNF219Q9P2Y4 722 aaPredicted RBP13.96□□□□□ -0.17
SPTLC1-203ENST00000461132 DSG3P32926 999 aa13.95□□□□□ -0.18
SPTLC1-203ENST00000461132 MYCNP04198 464 aaPredicted RBP13.91□□□□□ -0.18
SPTLC1-203ENST00000461132 ABCB7O75027 752 aa13.82□□□□□ -0.2
SPTLC1-203ENST00000461132 FOXD4L1Q9NU39 408 aa13.8□□□□□ -0.2
SPTLC1-203ENST00000461132 POLA2Q14181 598 aa13.57□□□□□ -0.24
SPTLC1-203ENST00000461132 ZBTB22O15209 634 aa13.48□□□□□ -0.25
SPTLC1-203ENST00000461132 RBM42Q9BTD8 480 aaKnown RBP13.45□□□□□ -0.26
SPTLC1-203ENST00000461132 ATF5Q9Y2D1 282 aaPredicted RBP13.44□□□□□ -0.26
SPTLC1-203ENST00000461132 ZBTB12Q9Y330 459 aaPredicted RBP13.4□□□□□ -0.26
SPTLC1-203ENST00000461132 ATXN8OSP0DMR3 200 aa13.37□□□□□ -0.27
SPTLC1-203ENST00000461132 POTEHQ6S545 545 aa13.25□□□□□ -0.29
SPTLC1-203ENST00000461132 FBLN2P98095 1184 aa13.12□□□□□ -0.31
SPTLC1-203ENST00000461132 OSCARQ8IYS5 282 aa13.12□□□□□ -0.31
SPTLC1-203ENST00000461132 AKT1S1Q96B36 256 aa13.1□□□□□ -0.31
SPTLC1-203ENST00000461132 CHRDL2Q6WN34 429 aa13.03□□□□□ -0.32
SPTLC1-203ENST00000461132 EHMT2Q96KQ7 1210 aa13.02□□□□□ -0.33
SPTLC1-203ENST00000461132 CSRNP3Q8WYN3 585 aa13□□□□□ -0.33
SPTLC1-203ENST00000461132 SPDYE2BA6NHP3 402 aa12.93□□□□□ -0.34
SPTLC1-203ENST00000461132 SPDYE6P0CI01 402 aa12.93□□□□□ -0.34
SPTLC1-203ENST00000461132 SPDYE2Q495Y8 402 aa12.93□□□□□ -0.34
SPTLC1-203ENST00000461132 REM2Q8IYK8 340 aaPredicted RBP12.93□□□□□ -0.34
SPTLC1-203ENST00000461132 MKRN4PQ13434 485 aaPredicted RBP12.82□□□□□ -0.36
SPTLC1-203ENST00000461132 ZNF692Q9BU19 519 aaPredicted RBP12.82□□□□□ -0.36
SPTLC1-203ENST00000461132 PITPNM1O00562 1244 aa12.79□□□□□ -0.36
SPTLC1-203ENST00000461132 PIP4P2Q8N4L2 257 aa12.71□□□□□ -0.37
SPTLC1-203ENST00000461132 SPDYE1Q8NFV5 336 aaPredicted RBP12.71□□□□□ -0.37
SPTLC1-203ENST00000461132 CLEC11AQ9Y240 323 aa12.71□□□□□ -0.37
SPTLC1-203ENST00000461132 SSUH2Q9Y2M2 353 aa12.68□□□□□ -0.38
SPTLC1-203ENST00000461132 FXR2P51116 673 aaKnown RBP eCLIP12.64□□□□□ -0.39
SPTLC1-203ENST00000461132 PABPN1Q86U42 306 aaKnown RBP eCLIP12.59□□□□□ -0.39
SPTLC1-203ENST00000461132 HAX1O00165 279 aa12.55□□□□□ -0.4
SPTLC1-203ENST00000461132 PRKAR2AP13861 404 aaKnown RBP12.52□□□□□ -0.41
SPTLC1-203ENST00000461132 PRR29P0C7W0 189 aa12.5□□□□□ -0.41
SPTLC1-203ENST00000461132 SP7Q8TDD2 431 aaPredicted RBP12.48□□□□□ -0.41
SPTLC1-203ENST00000461132 SPDYE4A6NLX3 237 aa12.41□□□□□ -0.42
SPTLC1-203ENST00000461132 CHADLQ6NUI6 762 aa12.36□□□□□ -0.43
SPTLC1-203ENST00000461132 STAG3Q9UJ98 1225 aa12.35□□□□□ -0.43
SPTLC1-203ENST00000461132 C19orf67A6NJJ6 358 aa12.23□□□□□ -0.45
SPTLC1-203ENST00000461132 EVX2Q03828 476 aa12.21□□□□□ -0.45
SPTLC1-203ENST00000461132 FARP1Q9Y4F1 1045 aaPredicted RBP12.2□□□□□ -0.46
SPTLC1-203ENST00000461132 CD44P16070 742 aaKnown RBP12.13□□□□□ -0.47
SPTLC1-203ENST00000461132 CREBZFQ9NS37 354 aa12.09□□□□□ -0.47
SPTLC1-203ENST00000461132 GABBR2O75899 941 aa12.05□□□□□ -0.48
SPTLC1-203ENST00000461132 NPM1P06748 294 aaKnown RBP eCLIP12.04□□□□□ -0.48
SPTLC1-203ENST00000461132 PAK3O75914 559 aaPredicted RBP12.03□□□□□ -0.48
SPTLC1-203ENST00000461132 PLEKHG5O94827 1062 aa12□□□□□ -0.49
SPTLC1-203ENST00000461132 CLCN6P51797 869 aa12□□□□□ -0.49
SPTLC1-203ENST00000461132 ZRANB1Q9UGI0 708 aa11.99□□□□□ -0.49
SPTLC1-203ENST00000461132 PROM2Q8N271 834 aa11.98□□□□□ -0.49
SPTLC1-203ENST00000461132 FKBP8Q14318 412 aa11.9□□□□□ -0.5
SPTLC1-203ENST00000461132 ZNF579Q8NAF0 562 aaKnown RBP11.9□□□□□ -0.5
SPTLC1-203ENST00000461132 MIER1Q8N108 512 aa11.88□□□□□ -0.51
SPTLC1-203ENST00000461132 DCBLD2Q96PD2 775 aa11.87□□□□□ -0.51
SPTLC1-203ENST00000461132 MNX1P50219 401 aaPredicted RBP11.84□□□□□ -0.51
SPTLC1-203ENST00000461132 PLCD3Q8N3E9 789 aa11.84□□□□□ -0.51
SPTLC1-203ENST00000461132 TSPYL2Q9H2G4 693 aaPredicted RBP11.77□□□□□ -0.53
SPTLC1-203ENST00000461132 ZBTB47Q9UFB7 747 aaPredicted RBP11.77□□□□□ -0.53
SPTLC1-203ENST00000461132 PHF12Q96QT6 1004 aa11.76□□□□□ -0.53
SPTLC1-203ENST00000461132 GALR2O43603 387 aaPredicted RBP11.73□□□□□ -0.53
SPTLC1-203ENST00000461132 LHX8Q68G74 356 aa11.72□□□□□ -0.53
SPTLC1-203ENST00000461132 FBXO3Q9UK99 471 aa11.71□□□□□ -0.53
SPTLC1-203ENST00000461132 POTEIP0CG38 1075 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms