RNA–Protein interactions for RNA: ENST00000460158.1

VPS8-215, Transcript of VPS8, CORVET complex subunit, humanhuman

TSL 3

Gene VPS8, Length 366 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-215ENST00000460158 AEBP2Q6ZN18 517 aaPredicted RBP19.4■□□□□ 0.7
VPS8-215ENST00000460158 CHIC1Q5VXU3 224 aa18.44■□□□□ 0.54
VPS8-215ENST00000460158 SENP3Q9H4L4 574 aaPredicted RBP16.63■□□□□ 0.25
VPS8-215ENST00000460158 PHF23Q9BUL5 403 aaPredicted RBP16.37■□□□□ 0.21
VPS8-215ENST00000460158 FOXD1Q16676 465 aa15.45■□□□□ 0.06
VPS8-215ENST00000460158 PLPPR3Q6T4P5 718 aa14.74□□□□□ -0.05
VPS8-215ENST00000460158 MSH5O43196 834 aa14.53□□□□□ -0.08
VPS8-215ENST00000460158 PIAS4Q8N2W9 510 aaPredicted RBP14.43□□□□□ -0.1
VPS8-215ENST00000460158 PPP6R1Q9UPN7 881 aa14.41□□□□□ -0.1
VPS8-215ENST00000460158 ADRA2BP18089 450 aa14.35□□□□□ -0.11
VPS8-215ENST00000460158 POTEDQ86YR6 584 aa14.18□□□□□ -0.14
VPS8-215ENST00000460158 SCAF1Q9H7N4 1312 aaKnown RBP13.22□□□□□ -0.29
VPS8-215ENST00000460158 MAPK8IP2Q13387 824 aaPredicted RBP13.18□□□□□ -0.3
VPS8-215ENST00000460158 DMRT2Q9Y5R5 561 aa13.17□□□□□ -0.3
VPS8-215ENST00000460158 PPP4R3CPQ6ZMV5 832 aa12.89□□□□□ -0.35
VPS8-215ENST00000460158 HOXD11P31277 338 aaPredicted RBP12.68□□□□□ -0.38
VPS8-215ENST00000460158 CNKSR2Q8WXI2 1034 aa12.68□□□□□ -0.38
VPS8-215ENST00000460158 DCAF8L1A6NGE4 600 aa12.58□□□□□ -0.4
VPS8-215ENST00000460158 RNF216Q9NWF9 866 aaPredicted RBP12.58□□□□□ -0.4
VPS8-215ENST00000460158 CACNB1Q02641 598 aaPredicted RBP12.45□□□□□ -0.42
VPS8-215ENST00000460158 NCBP3Q53F19 620 aaKnown RBP12.43□□□□□ -0.42
VPS8-215ENST00000460158 RNF39Q9H2S5 420 aa12.37□□□□□ -0.43
VPS8-215ENST00000460158 DNAJC5BQ9UF47 199 aa12.31□□□□□ -0.44
VPS8-215ENST00000460158 C1QBPQ07021 282 aaKnown RBP12.22□□□□□ -0.45
VPS8-215ENST00000460158 NPM3O75607 178 aaKnown RBP12.2□□□□□ -0.46
VPS8-215ENST00000460158 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.06□□□□□ -0.48
VPS8-215ENST00000460158 KCNA4P22459 653 aa11.91□□□□□ -0.5
VPS8-215ENST00000460158 U3KPZ7 1027 aaPredicted RBP11.78□□□□□ -0.52
VPS8-215ENST00000460158 SLC4A2P04920 1241 aa11.65□□□□□ -0.54
VPS8-215ENST00000460158 SPINK5Q9NQ38 1064 aaPredicted RBP11.61□□□□□ -0.55
VPS8-215ENST00000460158 CAPN15O75808 1086 aa11.6□□□□□ -0.55
VPS8-215ENST00000460158 DSG3P32926 999 aa11.56□□□□□ -0.56
VPS8-215ENST00000460158 APLP2Q06481 763 aa11.53□□□□□ -0.56
VPS8-215ENST00000460158 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.51□□□□□ -0.57
VPS8-215ENST00000460158 HNRNPUL2Q1KMD3 747 aaKnown RBP11.51□□□□□ -0.57
VPS8-215ENST00000460158 SAMD1Q6SPF0 538 aaPredicted RBP11.43□□□□□ -0.58
VPS8-215ENST00000460158 ZNF219Q9P2Y4 722 aaPredicted RBP11.43□□□□□ -0.58
VPS8-215ENST00000460158 TRHP20396 242 aaPredicted RBP11.4□□□□□ -0.58
VPS8-215ENST00000460158 MYCNP04198 464 aaPredicted RBP11.31□□□□□ -0.6
VPS8-215ENST00000460158 ABCB7O75027 752 aa11.3□□□□□ -0.6
VPS8-215ENST00000460158 SLC4A1APQ9BWU0 796 aaKnown RBP11.26□□□□□ -0.61
VPS8-215ENST00000460158 FOXD4L1Q9NU39 408 aa11.17□□□□□ -0.62
VPS8-215ENST00000460158 POTEHQ6S545 545 aa11.12□□□□□ -0.63
VPS8-215ENST00000460158 POLA2Q14181 598 aa11.11□□□□□ -0.63
VPS8-215ENST00000460158 RBM42Q9BTD8 480 aaKnown RBP11.08□□□□□ -0.64
VPS8-215ENST00000460158 EHMT2Q96KQ7 1210 aa11.02□□□□□ -0.65
VPS8-215ENST00000460158 ATF5Q9Y2D1 282 aaPredicted RBP10.99□□□□□ -0.65
VPS8-215ENST00000460158 ZBTB12Q9Y330 459 aaPredicted RBP10.95□□□□□ -0.66
VPS8-215ENST00000460158 ZBTB22O15209 634 aa10.94□□□□□ -0.66
VPS8-215ENST00000460158 ATXN8OSP0DMR3 200 aa10.87□□□□□ -0.67
VPS8-215ENST00000460158 CHRDL2Q6WN34 429 aa10.81□□□□□ -0.68
VPS8-215ENST00000460158 CSRNP3Q8WYN3 585 aa10.81□□□□□ -0.68
VPS8-215ENST00000460158 AKT1S1Q96B36 256 aa10.8□□□□□ -0.68
VPS8-215ENST00000460158 OSCARQ8IYS5 282 aa10.73□□□□□ -0.69
VPS8-215ENST00000460158 REM2Q8IYK8 340 aaPredicted RBP10.68□□□□□ -0.7
VPS8-215ENST00000460158 FBLN2P98095 1184 aa10.63□□□□□ -0.71
VPS8-215ENST00000460158 SPDYE2BA6NHP3 402 aa10.58□□□□□ -0.72
VPS8-215ENST00000460158 SPDYE6P0CI01 402 aa10.58□□□□□ -0.72
VPS8-215ENST00000460158 SPDYE2Q495Y8 402 aa10.58□□□□□ -0.72
VPS8-215ENST00000460158 PITPNM1O00562 1244 aa10.54□□□□□ -0.72
VPS8-215ENST00000460158 PIP4P2Q8N4L2 257 aa10.53□□□□□ -0.72
VPS8-215ENST00000460158 MKRN4PQ13434 485 aaPredicted RBP10.5□□□□□ -0.73
VPS8-215ENST00000460158 FXR2P51116 673 aaKnown RBP eCLIP10.49□□□□□ -0.73
VPS8-215ENST00000460158 ZNF692Q9BU19 519 aaPredicted RBP10.42□□□□□ -0.74
VPS8-215ENST00000460158 SSUH2Q9Y2M2 353 aa10.42□□□□□ -0.74
VPS8-215ENST00000460158 SP7Q8TDD2 431 aaPredicted RBP10.41□□□□□ -0.74
VPS8-215ENST00000460158 SPDYE1Q8NFV5 336 aaPredicted RBP10.4□□□□□ -0.74
VPS8-215ENST00000460158 HAX1O00165 279 aa10.35□□□□□ -0.75
VPS8-215ENST00000460158 CLEC11AQ9Y240 323 aa10.33□□□□□ -0.76
VPS8-215ENST00000460158 PRKAR2AP13861 404 aaKnown RBP10.28□□□□□ -0.76
VPS8-215ENST00000460158 PABPN1Q86U42 306 aaKnown RBP eCLIP10.26□□□□□ -0.77
VPS8-215ENST00000460158 PRR29P0C7W0 189 aa10.19□□□□□ -0.78
VPS8-215ENST00000460158 EVX2Q03828 476 aa10.19□□□□□ -0.78
VPS8-215ENST00000460158 C19orf67A6NJJ6 358 aa10.15□□□□□ -0.78
VPS8-215ENST00000460158 CHADLQ6NUI6 762 aa10.12□□□□□ -0.79
VPS8-215ENST00000460158 STAG3Q9UJ98 1225 aa10.03□□□□□ -0.8
VPS8-215ENST00000460158 FARP1Q9Y4F1 1045 aaPredicted RBP10.02□□□□□ -0.81
VPS8-215ENST00000460158 SPDYE4A6NLX3 237 aa10.01□□□□□ -0.81
VPS8-215ENST00000460158 GABBR2O75899 941 aa9.99□□□□□ -0.81
VPS8-215ENST00000460158 CD44P16070 742 aaKnown RBP9.95□□□□□ -0.82
VPS8-215ENST00000460158 CLCN6P51797 869 aa9.93□□□□□ -0.82
VPS8-215ENST00000460158 CREBZFQ9NS37 354 aa9.91□□□□□ -0.82
VPS8-215ENST00000460158 ZNF579Q8NAF0 562 aaKnown RBP9.82□□□□□ -0.84
VPS8-215ENST00000460158 PROM2Q8N271 834 aa9.8□□□□□ -0.84
VPS8-215ENST00000460158 ZRANB1Q9UGI0 708 aa9.8□□□□□ -0.84
VPS8-215ENST00000460158 NPM1P06748 294 aaKnown RBP eCLIP9.77□□□□□ -0.85
VPS8-215ENST00000460158 POTEIP0CG38 1075 aa9.76□□□□□ -0.85
VPS8-215ENST00000460158 FKBP8Q14318 412 aa9.76□□□□□ -0.85
VPS8-215ENST00000460158 LHX8Q68G74 356 aa9.76□□□□□ -0.85
VPS8-215ENST00000460158 PAK3O75914 559 aaPredicted RBP9.75□□□□□ -0.85
VPS8-215ENST00000460158 MNX1P50219 401 aaPredicted RBP9.75□□□□□ -0.85
VPS8-215ENST00000460158 DCBLD2Q96PD2 775 aa9.73□□□□□ -0.85
VPS8-215ENST00000460158 GALR2O43603 387 aaPredicted RBP9.66□□□□□ -0.86
VPS8-215ENST00000460158 PHF12Q96QT6 1004 aa9.63□□□□□ -0.87
VPS8-215ENST00000460158 PLEKHG5O94827 1062 aa9.59□□□□□ -0.87
VPS8-215ENST00000460158 MIER1Q8N108 512 aa9.56□□□□□ -0.88
VPS8-215ENST00000460158 TSPYL2Q9H2G4 693 aaPredicted RBP9.54□□□□□ -0.88
VPS8-215ENST00000460158 MS4A3Q96HJ5 214 aa9.52□□□□□ -0.89
VPS8-215ENST00000460158 CCDC61Q9Y6R9 512 aa9.52□□□□□ -0.89
VPS8-215ENST00000460158 ASTLQ6HA08 431 aaPredicted RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms