RNA–Protein interactions for RNA: ENST00000460064.1

CCDC50-203, Transcript of coiled-coil domain containing 50, humanhuman

TSL 2

Gene CCDC50, Length 420 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-203ENST00000460064 AEBP2Q6ZN18 517 aaPredicted RBP23.91■■□□□ 1.42
CCDC50-203ENST00000460064 CHIC1Q5VXU3 224 aa23.84■■□□□ 1.41
CCDC50-203ENST00000460064 PHF23Q9BUL5 403 aaPredicted RBP21.03■□□□□ 0.96
CCDC50-203ENST00000460064 SENP3Q9H4L4 574 aaPredicted RBP20.22■□□□□ 0.83
CCDC50-203ENST00000460064 PLPPR3Q6T4P5 718 aa19.6■□□□□ 0.73
CCDC50-203ENST00000460064 FOXD1Q16676 465 aa18.72■□□□□ 0.59
CCDC50-203ENST00000460064 ADRA2BP18089 450 aa18.45■□□□□ 0.54
CCDC50-203ENST00000460064 PPP6R1Q9UPN7 881 aa18.42■□□□□ 0.54
CCDC50-203ENST00000460064 PIAS4Q8N2W9 510 aaPredicted RBP17.79■□□□□ 0.44
CCDC50-203ENST00000460064 KCNA4P22459 653 aa17.51■□□□□ 0.39
CCDC50-203ENST00000460064 PPP4R3CPQ6ZMV5 832 aa17.36■□□□□ 0.37
CCDC50-203ENST00000460064 MSH5O43196 834 aa17.05■□□□□ 0.32
CCDC50-203ENST00000460064 NCBP3Q53F19 620 aaKnown RBP17.05■□□□□ 0.32
CCDC50-203ENST00000460064 EHMT2Q96KQ7 1210 aa16.9■□□□□ 0.3
CCDC50-203ENST00000460064 SCAF1Q9H7N4 1312 aaKnown RBP16.88■□□□□ 0.29
CCDC50-203ENST00000460064 NPM3O75607 178 aaKnown RBP16.78■□□□□ 0.28
CCDC50-203ENST00000460064 SLC4A1APQ9BWU0 796 aaKnown RBP16.78■□□□□ 0.28
CCDC50-203ENST00000460064 CNKSR2Q8WXI2 1034 aa16.75■□□□□ 0.27
CCDC50-203ENST00000460064 MAPK8IP2Q13387 824 aaPredicted RBP16.6■□□□□ 0.25
CCDC50-203ENST00000460064 CSRNP3Q8WYN3 585 aa16.45■□□□□ 0.22
CCDC50-203ENST00000460064 RNF216Q9NWF9 866 aaPredicted RBP16.28■□□□□ 0.2
CCDC50-203ENST00000460064 DMRT2Q9Y5R5 561 aa16.21■□□□□ 0.19
CCDC50-203ENST00000460064 DNAJC5BQ9UF47 199 aa16.14■□□□□ 0.17
CCDC50-203ENST00000460064 ZBTB22O15209 634 aa16.09■□□□□ 0.17
CCDC50-203ENST00000460064 HOXD11P31277 338 aaPredicted RBP16.07■□□□□ 0.16
CCDC50-203ENST00000460064 FOXD4L1Q9NU39 408 aa15.95■□□□□ 0.14
CCDC50-203ENST00000460064 SLC4A2P04920 1241 aa15.71■□□□□ 0.11
CCDC50-203ENST00000460064 DCAF8L1A6NGE4 600 aa15.57■□□□□ 0.08
CCDC50-203ENST00000460064 MYCNP04198 464 aaPredicted RBP15.49■□□□□ 0.07
CCDC50-203ENST00000460064 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.37■□□□□ 0.051e-6■■■□□ 14.8
CCDC50-203ENST00000460064 ATXN8OSP0DMR3 200 aa15.35■□□□□ 0.05
CCDC50-203ENST00000460064 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.13■□□□□ 0.01
CCDC50-203ENST00000460064 HNRNPUL2Q1KMD3 747 aaKnown RBP15.13■□□□□ 0.01
CCDC50-203ENST00000460064 U3KPZ7 1027 aaPredicted RBP15.13■□□□□ 0.01
CCDC50-203ENST00000460064 SAMD1Q6SPF0 538 aaPredicted RBP15.09■□□□□ 0.01
CCDC50-203ENST00000460064 ATF5Q9Y2D1 282 aaPredicted RBP15.05■□□□□ -0
CCDC50-203ENST00000460064 POTEDQ86YR6 584 aa15.04■□□□□ -0
CCDC50-203ENST00000460064 APLP2Q06481 763 aa14.86□□□□□ -0.03
CCDC50-203ENST00000460064 FKBP8Q14318 412 aa14.86□□□□□ -0.03
CCDC50-203ENST00000460064 ZNF219Q9P2Y4 722 aaPredicted RBP14.77□□□□□ -0.05
CCDC50-203ENST00000460064 RNF39Q9H2S5 420 aa14.65□□□□□ -0.06
CCDC50-203ENST00000460064 TRHP20396 242 aaPredicted RBP14.6□□□□□ -0.07
CCDC50-203ENST00000460064 SPINK5Q9NQ38 1064 aaPredicted RBP14.59□□□□□ -0.07
CCDC50-203ENST00000460064 CAPN15O75808 1086 aa14.54□□□□□ -0.08
CCDC50-203ENST00000460064 C1QBPQ07021 282 aaKnown RBP14.52□□□□□ -0.09
CCDC50-203ENST00000460064 POLA2Q14181 598 aa14.47□□□□□ -0.09
CCDC50-203ENST00000460064 FBLN2P98095 1184 aa14.41□□□□□ -0.1
CCDC50-203ENST00000460064 MKRN4PQ13434 485 aaPredicted RBP14.41□□□□□ -0.1
CCDC50-203ENST00000460064 AMER1Q5JTC6 1135 aaPredicted RBP14.4□□□□□ -0.1
CCDC50-203ENST00000460064 RTN4Q9NQC3 1192 aaKnown RBP14.38□□□□□ -0.11
CCDC50-203ENST00000460064 SPDYE4A6NLX3 237 aa14.36□□□□□ -0.11
CCDC50-203ENST00000460064 ABCB7O75027 752 aa14.3□□□□□ -0.12
CCDC50-203ENST00000460064 ZBTB12Q9Y330 459 aaPredicted RBP14.22□□□□□ -0.13
CCDC50-203ENST00000460064 FBXO3Q9UK99 471 aa14.19□□□□□ -0.14
CCDC50-203ENST00000460064 DSG3P32926 999 aa14.13□□□□□ -0.15
CCDC50-203ENST00000460064 PROM2Q8N271 834 aa14.11□□□□□ -0.15
CCDC50-203ENST00000460064 CACNB1Q02641 598 aaPredicted RBP13.96□□□□□ -0.17
CCDC50-203ENST00000460064 VASPP50552 380 aaPredicted RBP13.95□□□□□ -0.18
CCDC50-203ENST00000460064 ZNF692Q9BU19 519 aaPredicted RBP13.95□□□□□ -0.18
CCDC50-203ENST00000460064 OSCARQ8IYS5 282 aa13.9□□□□□ -0.18
CCDC50-203ENST00000460064 SPDYE2BA6NHP3 402 aa13.87□□□□□ -0.19
CCDC50-203ENST00000460064 SPDYE6P0CI01 402 aa13.87□□□□□ -0.19
CCDC50-203ENST00000460064 SPDYE2Q495Y8 402 aa13.87□□□□□ -0.19
CCDC50-203ENST00000460064 IFNLR1Q8IU57 520 aaPredicted RBP13.82□□□□□ -0.2
CCDC50-203ENST00000460064 SLC24A1O60721 1099 aa13.81□□□□□ -0.2
CCDC50-203ENST00000460064 SSUH2Q9Y2M2 353 aa13.79□□□□□ -0.2
CCDC50-203ENST00000460064 PABPN1Q86U42 306 aaKnown RBP eCLIP13.77□□□□□ -0.21
CCDC50-203ENST00000460064 STAG3Q9UJ98 1225 aa13.73□□□□□ -0.21
CCDC50-203ENST00000460064 KLHL34Q8N239 644 aa13.68□□□□□ -0.22
CCDC50-203ENST00000460064 PLCD3Q8N3E9 789 aa13.63□□□□□ -0.23
CCDC50-203ENST00000460064 MIER1Q8N108 512 aa13.62□□□□□ -0.23
CCDC50-203ENST00000460064 SPOCK2Q92563 424 aa13.58□□□□□ -0.24
CCDC50-203ENST00000460064 PKD2Q13563 968 aa13.53□□□□□ -0.24
CCDC50-203ENST00000460064 DCAF8L2P0C7V8 631 aa13.51□□□□□ -0.25
CCDC50-203ENST00000460064 PLEKHG5O94827 1062 aa13.49□□□□□ -0.25
CCDC50-203ENST00000460064 RBM42Q9BTD8 480 aaKnown RBP13.45□□□□□ -0.26
CCDC50-203ENST00000460064 ZBTB47Q9UFB7 747 aaPredicted RBP13.41□□□□□ -0.26
CCDC50-203ENST00000460064 ECM2O94769 699 aaPredicted RBP13.4□□□□□ -0.26
CCDC50-203ENST00000460064 AKT1S1Q96B36 256 aa13.4□□□□□ -0.26
CCDC50-203ENST00000460064 SPDYE1Q8NFV5 336 aaPredicted RBP13.37□□□□□ -0.27
CCDC50-203ENST00000460064 CIZ1Q9ULV3 898 aaPredicted RBP13.33□□□□□ -0.28
CCDC50-203ENST00000460064 CLEC11AQ9Y240 323 aa13.33□□□□□ -0.28
CCDC50-203ENST00000460064 PLCB2Q00722 1185 aa13.31□□□□□ -0.28
CCDC50-203ENST00000460064 REM2Q8IYK8 340 aaPredicted RBP13.28□□□□□ -0.28
CCDC50-203ENST00000460064 PRR29P0C7W0 189 aa13.27□□□□□ -0.29
CCDC50-203ENST00000460064 RGL2O15211 777 aa13.23□□□□□ -0.29
CCDC50-203ENST00000460064 HAP1P54257 671 aaPredicted RBP13.17□□□□□ -0.3
CCDC50-203ENST00000460064 CREBZFQ9NS37 354 aa13.17□□□□□ -0.3
CCDC50-203ENST00000460064 NPM1P06748 294 aaKnown RBP eCLIP13.15□□□□□ -0.3
CCDC50-203ENST00000460064 GSE1Q14687 1217 aa13.15□□□□□ -0.3
CCDC50-203ENST00000460064 BBXQ8WY36 941 aaPredicted RBP13.15□□□□□ -0.3
CCDC50-203ENST00000460064 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.15□□□□□ -0.3
CCDC50-203ENST00000460064 NUBP1P53384 320 aa13.14□□□□□ -0.31
CCDC50-203ENST00000460064 DCAF8Q5TAQ9 597 aa13.14□□□□□ -0.31
CCDC50-203ENST00000460064 TRIM41Q8WV44 630 aa13.14□□□□□ -0.31
CCDC50-203ENST00000460064 PITPNM1O00562 1244 aa13.1□□□□□ -0.31
CCDC50-203ENST00000460064 MNX1P50219 401 aaPredicted RBP13.08□□□□□ -0.32
CCDC50-203ENST00000460064 CHGAP10645 457 aaKnown RBP13.06□□□□□ -0.32
CCDC50-203ENST00000460064 PAXIP1Q6ZW49 1069 aaPredicted RBP13.05□□□□□ -0.32
CCDC50-203ENST00000460064 FAM212AQ96EL1 285 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms