RNA–Protein interactions for RNA: ENST00000459902.1

CKAP2-204, Transcript of cytoskeleton associated protein 2, humanhuman

TSL 2

Gene CKAP2, Length 798 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-204ENST00000459902 AEBP2Q6ZN18 517 aaPredicted RBP31.78■■■□□ 2.68
CKAP2-204ENST00000459902 CHIC1Q5VXU3 224 aa31.25■■■□□ 2.59
CKAP2-204ENST00000459902 PHF23Q9BUL5 403 aaPredicted RBP27.55■■■□□ 2
CKAP2-204ENST00000459902 SENP3Q9H4L4 574 aaPredicted RBP26.87■■□□□ 1.89
CKAP2-204ENST00000459902 PLPPR3Q6T4P5 718 aa25.47■■□□□ 1.67
CKAP2-204ENST00000459902 FOXD1Q16676 465 aa24.95■■□□□ 1.58
CKAP2-204ENST00000459902 PPP6R1Q9UPN7 881 aa24.25■■□□□ 1.47
CKAP2-204ENST00000459902 ADRA2BP18089 450 aa24.22■■□□□ 1.47
CKAP2-204ENST00000459902 PIAS4Q8N2W9 510 aaPredicted RBP23.56■■□□□ 1.36
CKAP2-204ENST00000459902 MSH5O43196 834 aa22.85■■□□□ 1.25
CKAP2-204ENST00000459902 PPP4R3CPQ6ZMV5 832 aa22.51■■□□□ 1.19
CKAP2-204ENST00000459902 KCNA4P22459 653 aa22.27■■□□□ 1.16
CKAP2-204ENST00000459902 SCAF1Q9H7N4 1312 aaKnown RBP22.08■■□□□ 1.13
CKAP2-204ENST00000459902 NCBP3Q53F19 620 aaKnown RBP21.94■■□□□ 1.1
CKAP2-204ENST00000459902 MAPK8IP2Q13387 824 aaPredicted RBP21.92■■□□□ 1.1
CKAP2-204ENST00000459902 CNKSR2Q8WXI2 1034 aa21.79■■□□□ 1.08
CKAP2-204ENST00000459902 NPM3O75607 178 aaKnown RBP21.66■■□□□ 1.06
CKAP2-204ENST00000459902 DMRT2Q9Y5R5 561 aa21.5■■□□□ 1.03
CKAP2-204ENST00000459902 RNF216Q9NWF9 866 aaPredicted RBP21.31■■□□□ 1
CKAP2-204ENST00000459902 SLC4A1APQ9BWU0 796 aaKnown RBP21.23■□□□□ 0.99
CKAP2-204ENST00000459902 HOXD11P31277 338 aaPredicted RBP21.17■□□□□ 0.98
CKAP2-204ENST00000459902 DNAJC5BQ9UF47 199 aa20.97■□□□□ 0.95
CKAP2-204ENST00000459902 EHMT2Q96KQ7 1210 aa20.93■□□□□ 0.94
CKAP2-204ENST00000459902 CSRNP3Q8WYN3 585 aa20.61■□□□□ 0.89
CKAP2-204ENST00000459902 DCAF8L1A6NGE4 600 aa20.56■□□□□ 0.88
CKAP2-204ENST00000459902 ZBTB22O15209 634 aa20.52■□□□□ 0.88
CKAP2-204ENST00000459902 SLC4A2P04920 1241 aa20.41■□□□□ 0.86
CKAP2-204ENST00000459902 POTEDQ86YR6 584 aa20.41■□□□□ 0.86
CKAP2-204ENST00000459902 FOXD4L1Q9NU39 408 aa20.39■□□□□ 0.85
CKAP2-204ENST00000459902 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.15■□□□□ 0.825e-7■■■■□ 23.8
CKAP2-204ENST00000459902 MYCNP04198 464 aaPredicted RBP19.98■□□□□ 0.79
CKAP2-204ENST00000459902 U3KPZ7 1027 aaPredicted RBP19.88■□□□□ 0.77
CKAP2-204ENST00000459902 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.66■□□□□ 0.74
CKAP2-204ENST00000459902 HNRNPUL2Q1KMD3 747 aaKnown RBP19.66■□□□□ 0.74
CKAP2-204ENST00000459902 ATXN8OSP0DMR3 200 aa19.65■□□□□ 0.74
CKAP2-204ENST00000459902 RNF39Q9H2S5 420 aa19.64■□□□□ 0.73
CKAP2-204ENST00000459902 SAMD1Q6SPF0 538 aaPredicted RBP19.61■□□□□ 0.73
CKAP2-204ENST00000459902 ATF5Q9Y2D1 282 aaPredicted RBP19.49■□□□□ 0.71
CKAP2-204ENST00000459902 C1QBPQ07021 282 aaKnown RBP19.4■□□□□ 0.7
CKAP2-204ENST00000459902 APLP2Q06481 763 aa19.37■□□□□ 0.69
CKAP2-204ENST00000459902 SPINK5Q9NQ38 1064 aaPredicted RBP19.27■□□□□ 0.68
CKAP2-204ENST00000459902 CAPN15O75808 1086 aa19.14■□□□□ 0.65
CKAP2-204ENST00000459902 TRHP20396 242 aaPredicted RBP19.13■□□□□ 0.65
CKAP2-204ENST00000459902 ZNF219Q9P2Y4 722 aaPredicted RBP19.13■□□□□ 0.65
CKAP2-204ENST00000459902 CACNB1Q02641 598 aaPredicted RBP18.94■□□□□ 0.62
CKAP2-204ENST00000459902 POLA2Q14181 598 aa18.89■□□□□ 0.61
CKAP2-204ENST00000459902 ABCB7O75027 752 aa18.82■□□□□ 0.6
CKAP2-204ENST00000459902 DSG3P32926 999 aa18.78■□□□□ 0.6
CKAP2-204ENST00000459902 MKRN4PQ13434 485 aaPredicted RBP18.64■□□□□ 0.57
CKAP2-204ENST00000459902 FBLN2P98095 1184 aa18.58■□□□□ 0.56
CKAP2-204ENST00000459902 FKBP8Q14318 412 aa18.58■□□□□ 0.56
CKAP2-204ENST00000459902 ZBTB12Q9Y330 459 aaPredicted RBP18.52■□□□□ 0.56
CKAP2-204ENST00000459902 SPDYE4A6NLX3 237 aa18.31■□□□□ 0.52
CKAP2-204ENST00000459902 OSCARQ8IYS5 282 aa18.22■□□□□ 0.51
CKAP2-204ENST00000459902 SPDYE2BA6NHP3 402 aa18.08■□□□□ 0.48
CKAP2-204ENST00000459902 SPDYE6P0CI01 402 aa18.08■□□□□ 0.48
CKAP2-204ENST00000459902 SPDYE2Q495Y8 402 aa18.08■□□□□ 0.48
CKAP2-204ENST00000459902 ZNF692Q9BU19 519 aaPredicted RBP18.07■□□□□ 0.48
CKAP2-204ENST00000459902 PROM2Q8N271 834 aa18.06■□□□□ 0.48
CKAP2-204ENST00000459902 SSUH2Q9Y2M2 353 aa17.98■□□□□ 0.47
CKAP2-204ENST00000459902 PABPN1Q86U42 306 aaKnown RBP eCLIP17.84■□□□□ 0.45
CKAP2-204ENST00000459902 RBM42Q9BTD8 480 aaKnown RBP17.84■□□□□ 0.45
CKAP2-204ENST00000459902 FBXO3Q9UK99 471 aa17.82■□□□□ 0.44
CKAP2-204ENST00000459902 AKT1S1Q96B36 256 aa17.7■□□□□ 0.42
CKAP2-204ENST00000459902 VASPP50552 380 aaPredicted RBP17.59■□□□□ 0.41
CKAP2-204ENST00000459902 REM2Q8IYK8 340 aaPredicted RBP17.56■□□□□ 0.4
CKAP2-204ENST00000459902 STAG3Q9UJ98 1225 aa17.56■□□□□ 0.4
CKAP2-204ENST00000459902 SPDYE1Q8NFV5 336 aaPredicted RBP17.48■□□□□ 0.39
CKAP2-204ENST00000459902 CLEC11AQ9Y240 323 aa17.41■□□□□ 0.38
CKAP2-204ENST00000459902 IFNLR1Q8IU57 520 aaPredicted RBP17.4■□□□□ 0.38
CKAP2-204ENST00000459902 PITPNM1O00562 1244 aa17.35■□□□□ 0.37
CKAP2-204ENST00000459902 MIER1Q8N108 512 aa17.35■□□□□ 0.37
CKAP2-204ENST00000459902 RTN4Q9NQC3 1192 aaKnown RBP17.35■□□□□ 0.37
CKAP2-204ENST00000459902 AMER1Q5JTC6 1135 aaPredicted RBP17.34■□□□□ 0.37
CKAP2-204ENST00000459902 PLCD3Q8N3E9 789 aa17.33■□□□□ 0.36
CKAP2-204ENST00000459902 PRR29P0C7W0 189 aa17.29■□□□□ 0.36
CKAP2-204ENST00000459902 KLHL34Q8N239 644 aa17.23■□□□□ 0.35
CKAP2-204ENST00000459902 PLEKHG5O94827 1062 aa17.18■□□□□ 0.34
CKAP2-204ENST00000459902 CREBZFQ9NS37 354 aa17.14■□□□□ 0.33
CKAP2-204ENST00000459902 SPOCK2Q92563 424 aa17.12■□□□□ 0.33
CKAP2-204ENST00000459902 ZBTB47Q9UFB7 747 aaPredicted RBP17.08■□□□□ 0.32
CKAP2-204ENST00000459902 CHRDL2Q6WN34 429 aa17.03■□□□□ 0.32
CKAP2-204ENST00000459902 MNX1P50219 401 aaPredicted RBP17.02■□□□□ 0.32
CKAP2-204ENST00000459902 FXR2P51116 673 aaKnown RBP eCLIP16.98■□□□□ 0.31
CKAP2-204ENST00000459902 CHADLQ6NUI6 762 aa16.98■□□□□ 0.31
CKAP2-204ENST00000459902 PKD2Q13563 968 aa16.92■□□□□ 0.3
CKAP2-204ENST00000459902 PRKAR2AP13861 404 aaKnown RBP16.91■□□□□ 0.3
CKAP2-204ENST00000459902 NUBP1P53384 320 aa16.89■□□□□ 0.29
CKAP2-204ENST00000459902 PIP4P2Q8N4L2 257 aa16.89■□□□□ 0.29
CKAP2-204ENST00000459902 FARP1Q9Y4F1 1045 aaPredicted RBP16.83■□□□□ 0.28
CKAP2-204ENST00000459902 NPM1P06748 294 aaKnown RBP eCLIP16.82■□□□□ 0.28
CKAP2-204ENST00000459902 CIZ1Q9ULV3 898 aaPredicted RBP16.82■□□□□ 0.28
CKAP2-204ENST00000459902 RASEFQ8IZ41 740 aa16.76■□□□□ 0.27
CKAP2-204ENST00000459902 DCAF8Q5TAQ9 597 aa16.75■□□□□ 0.27
CKAP2-204ENST00000459902 ECM2O94769 699 aaPredicted RBP16.74■□□□□ 0.27
CKAP2-204ENST00000459902 GSE1Q14687 1217 aa16.73■□□□□ 0.27
CKAP2-204ENST00000459902 FAM212AQ96EL1 285 aa16.71■□□□□ 0.27
CKAP2-204ENST00000459902 TRIM41Q8WV44 630 aa16.62■□□□□ 0.25
CKAP2-204ENST00000459902 RGL2O15211 777 aa16.59■□□□□ 0.25
CKAP2-204ENST00000459902 TSPYL2Q9H2G4 693 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms