RNA–Protein interactions for RNA: ENST00000453944.1

DDX59-208, Transcript of DEAD-box helicase 59, human

TSL 3

Gene DDX59, Length 643 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX59-208	ENST00000453944	CHIC1	Q5VXU3	224 aa		15.95	■□□□□ 0.14
DDX59-208	ENST00000453944	AEBP2	Q6ZN18	517 aa	Predicted RBP	15.95	■□□□□ 0.14
DDX59-208	ENST00000453944	PHF23	Q9BUL5	403 aa	Predicted RBP	14.17	□□□□□ -0.14
DDX59-208	ENST00000453944	SENP3	Q9H4L4	574 aa	Predicted RBP	13.32	□□□□□ -0.28
DDX59-208	ENST00000453944	PLPPR3	Q6T4P5	718 aa		13.11	□□□□□ -0.31
DDX59-208	ENST00000453944	ADRA2B	P18089	450 aa		12.44	□□□□□ -0.42
DDX59-208	ENST00000453944	FOXD1	Q16676	465 aa		12.41	□□□□□ -0.42
DDX59-208	ENST00000453944	PPP6R1	Q9UPN7	881 aa		12.38	□□□□□ -0.43
DDX59-208	ENST00000453944	KCNA4	P22459	653 aa		11.99	□□□□□ -0.49
DDX59-208	ENST00000453944	PIAS4	Q8N2W9	510 aa	Predicted RBP	11.78	□□□□□ -0.52
DDX59-208	ENST00000453944	EHMT2	Q96KQ7	1210 aa		11.74	□□□□□ -0.53
DDX59-208	ENST00000453944	PPP4R3CP	Q6ZMV5	832 aa		11.68	□□□□□ -0.54
DDX59-208	ENST00000453944	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.45	□□□□□ -0.58
DDX59-208	ENST00000453944	NCBP3	Q53F19	620 aa	Known RBP	11.43	□□□□□ -0.58
DDX59-208	ENST00000453944	CSRNP3	Q8WYN3	585 aa		11.36	□□□□□ -0.59
DDX59-208	ENST00000453944	NPM3	O75607	178 aa	Known RBP	11.35	□□□□□ -0.59
DDX59-208	ENST00000453944	CNKSR2	Q8WXI2	1034 aa		11.19	□□□□□ -0.62
DDX59-208	ENST00000453944	SCAF1	Q9H7N4	1312 aa	Known RBP	11.16	□□□□□ -0.62
DDX59-208	ENST00000453944	MSH5	O43196	834 aa		11.14	□□□□□ -0.63
DDX59-208	ENST00000453944	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.14	□□□□□ -0.63
DDX59-208	ENST00000453944	ZBTB22	O15209	634 aa		11.07	□□□□□ -0.64
DDX59-208	ENST00000453944	RNF216	Q9NWF9	866 aa	Predicted RBP	10.86	□□□□□ -0.67
DDX59-208	ENST00000453944	DNAJC5B	Q9UF47	199 aa		10.81	□□□□□ -0.68
DDX59-208	ENST00000453944	FOXD4L1	Q9NU39	408 aa		10.8	□□□□□ -0.68
DDX59-208	ENST00000453944	DMRT2	Q9Y5R5	561 aa		10.73	□□□□□ -0.69
DDX59-208	ENST00000453944	HOXD11	P31277	338 aa	Predicted RBP	10.69	□□□□□ -0.7
DDX59-208	ENST00000453944	SLC4A2	P04920	1241 aa		10.63	□□□□□ -0.71
DDX59-208	ENST00000453944	MYCN	P04198	464 aa	Predicted RBP	10.4	□□□□□ -0.74
DDX59-208	ENST00000453944	ATXN8OS	P0DMR3	200 aa		10.34	□□□□□ -0.75
DDX59-208	ENST00000453944	DCAF8L1	A6NGE4	600 aa		10.32	□□□□□ -0.76
DDX59-208	ENST00000453944	ATF5	Q9Y2D1	282 aa	Predicted RBP	10.24	□□□□□ -0.77
DDX59-208	ENST00000453944	FKBP8	Q14318	412 aa		10.23	□□□□□ -0.77
DDX59-208	ENST00000453944	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.23	□□□□□ -0.77
DDX59-208	ENST00000453944	RTN4	Q9NQC3	1192 aa	Known RBP	10.17	□□□□□ -0.78
DDX59-208	ENST00000453944		U3KPZ7	1027 aa	Predicted RBP	10.12	□□□□□ -0.79
DDX59-208	ENST00000453944	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.05	□□□□□ -0.8
DDX59-208	ENST00000453944	SAMD1	Q6SPF0	538 aa	Predicted RBP	10.05	□□□□□ -0.8
DDX59-208	ENST00000453944	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	10.03	□□□□□ -0.8
DDX59-208	ENST00000453944	HNRNPUL2	Q1KMD3	747 aa	Known RBP	10.03	□□□□□ -0.8
DDX59-208	ENST00000453944	ZNF219	Q9P2Y4	722 aa	Predicted RBP	9.94	□□□□□ -0.82
DDX59-208	ENST00000453944	SLC24A1	O60721	1099 aa		9.89	□□□□□ -0.83
DDX59-208	ENST00000453944	MKRN4P	Q13434	485 aa	Predicted RBP	9.78	□□□□□ -0.84
DDX59-208	ENST00000453944	APLP2	Q06481	763 aa		9.77	□□□□□ -0.85
DDX59-208	ENST00000453944	SPINK5	Q9NQ38	1064 aa	Predicted RBP	9.76	□□□□□ -0.85
DDX59-208	ENST00000453944	SPDYE4	A6NLX3	237 aa		9.74	□□□□□ -0.85
DDX59-208	ENST00000453944	TRH	P20396	242 aa	Predicted RBP	9.74	□□□□□ -0.85
DDX59-208	ENST00000453944	POLA2	Q14181	598 aa		9.69	□□□□□ -0.86
DDX59-208	ENST00000453944	RNF39	Q9H2S5	420 aa		9.65	□□□□□ -0.86
DDX59-208	ENST00000453944	CAPN15	O75808	1086 aa		9.64	□□□□□ -0.87
DDX59-208	ENST00000453944	FBLN2	P98095	1184 aa		9.63	□□□□□ -0.87
DDX59-208	ENST00000453944	FBXO3	Q9UK99	471 aa		9.62	□□□□□ -0.87
DDX59-208	ENST00000453944	PROM2	Q8N271	834 aa		9.6	□□□□□ -0.87
DDX59-208	ENST00000453944	ABCB7	O75027	752 aa		9.56	□□□□□ -0.88
DDX59-208	ENST00000453944	VASP	P50552	380 aa	Predicted RBP	9.55	□□□□□ -0.88
DDX59-208	ENST00000453944	C1QBP	Q07021	282 aa	Known RBP	9.51	□□□□□ -0.89
DDX59-208	ENST00000453944	IFNLR1	Q8IU57	520 aa	Predicted RBP	9.51	□□□□□ -0.89
DDX59-208	ENST00000453944	POTED	Q86YR6	584 aa		9.42	□□□□□ -0.9
DDX59-208	ENST00000453944	ZBTB12	Q9Y330	459 aa	Predicted RBP	9.4	□□□□□ -0.9
DDX59-208	ENST00000453944	DSG3	P32926	999 aa		9.37	□□□□□ -0.91
DDX59-208	ENST00000453944	PKD2	Q13563	968 aa		9.37	□□□□□ -0.91
DDX59-208	ENST00000453944	DCAF8L2	P0C7V8	631 aa		9.36	□□□□□ -0.91
DDX59-208	ENST00000453944	ZNF692	Q9BU19	519 aa	Predicted RBP	9.35	□□□□□ -0.91
DDX59-208	ENST00000453944	PLCB2	Q00722	1185 aa		9.33	□□□□□ -0.92
DDX59-208	ENST00000453944	OSCAR	Q8IYS5	282 aa		9.32	□□□□□ -0.92
DDX59-208	ENST00000453944	KLHL34	Q8N239	644 aa		9.3	□□□□□ -0.92
DDX59-208	ENST00000453944	PABPN1	Q86U42	306 aa	Known RBP eCLIP	9.25	□□□□□ -0.93
DDX59-208	ENST00000453944	SPOCK2	Q92563	424 aa		9.25	□□□□□ -0.93
DDX59-208	ENST00000453944	SSUH2	Q9Y2M2	353 aa		9.25	□□□□□ -0.93
DDX59-208	ENST00000453944	SPDYE2B	A6NHP3	402 aa		9.24	□□□□□ -0.93
DDX59-208	ENST00000453944	SPDYE6	P0CI01	402 aa		9.24	□□□□□ -0.93
DDX59-208	ENST00000453944	HAP1	P54257	671 aa	Predicted RBP	9.24	□□□□□ -0.93
DDX59-208	ENST00000453944	SPDYE2	Q495Y8	402 aa		9.24	□□□□□ -0.93
DDX59-208	ENST00000453944	STAG3	Q9UJ98	1225 aa		9.23	□□□□□ -0.93
DDX59-208	ENST00000453944	PLCD3	Q8N3E9	789 aa		9.22	□□□□□ -0.93
DDX59-208	ENST00000453944	MIER1	Q8N108	512 aa		9.21	□□□□□ -0.94
DDX59-208	ENST00000453944	ECM2	O94769	699 aa	Predicted RBP	9.2	□□□□□ -0.94
DDX59-208	ENST00000453944	NPM1	P06748	294 aa	Known RBP eCLIP	9.17	□□□□□ -0.94
DDX59-208	ENST00000453944	RGL2	O15211	777 aa		9.13	□□□□□ -0.95
DDX59-208	ENST00000453944	BBX	Q8WY36	941 aa	Predicted RBP	9.09	□□□□□ -0.95
DDX59-208	ENST00000453944	CACNB1	Q02641	598 aa	Predicted RBP	9.08	□□□□□ -0.96
DDX59-208	ENST00000453944	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	9.08	□□□□□ -0.96
DDX59-208	ENST00000453944	CIZ1	Q9ULV3	898 aa	Predicted RBP	9.08	□□□□□ -0.96
DDX59-208	ENST00000453944	CFAP44	Q96MT7	982 aa		9.06	□□□□□ -0.96
DDX59-208	ENST00000453944	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	9.06	□□□□□ -0.96
DDX59-208	ENST00000453944	VSIG10	Q8N0Z9	540 aa		9.05	□□□□□ -0.96
DDX59-208	ENST00000453944	KDM2A	Q9Y2K7	1162 aa		9.04	□□□□□ -0.96
DDX59-208	ENST00000453944	PLEKHG5	O94827	1062 aa		9	□□□□□ -0.97
DDX59-208	ENST00000453944	CHGA	P10645	457 aa	Known RBP	8.99	□□□□□ -0.97
DDX59-208	ENST00000453944	PRKCSH	P14314	528 aa	Predicted RBP	8.97	□□□□□ -0.97
DDX59-208	ENST00000453944	BCAN	Q96GW7	911 aa		8.97	□□□□□ -0.97
DDX59-208	ENST00000453944	ZBTB47	Q9UFB7	747 aa	Predicted RBP	8.97	□□□□□ -0.97
DDX59-208	ENST00000453944	SPRYD3	Q8NCJ5	442 aa		8.96	□□□□□ -0.98
DDX59-208	ENST00000453944	TSHZ2	Q9NRE2	1034 aa		8.96	□□□□□ -0.98
DDX59-208	ENST00000453944	NUBP1	P53384	320 aa		8.91	□□□□□ -0.98
DDX59-208	ENST00000453944	RNF25	Q96BH1	459 aa	Predicted RBP	8.9	□□□□□ -0.98
DDX59-208	ENST00000453944	DCAF8	Q5TAQ9	597 aa		8.89	□□□□□ -0.99
DDX59-208	ENST00000453944	CLEC11A	Q9Y240	323 aa		8.89	□□□□□ -0.99
DDX59-208	ENST00000453944	TAOK2	Q9UL54	1235 aa		8.88	□□□□□ -0.99
DDX59-208	ENST00000453944	GSE1	Q14687	1217 aa		8.87	□□□□□ -0.99
DDX59-208	ENST00000453944	SPDYE1	Q8NFV5	336 aa	Predicted RBP	8.87	□□□□□ -0.99

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms