RNA–Protein interactions for RNA: ENST00000452950.1

CSTF1-204, Transcript of cleavage stimulation factor subunit 1, humanhuman

TSL 3

Gene CSTF1, Length 1,233 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF1-204ENST00000452950 AEBP2Q6ZN18 517 aaPredicted RBP26.18■■□□□ 1.78
CSTF1-204ENST00000452950 CHIC1Q5VXU3 224 aa25.04■■□□□ 1.6
CSTF1-204ENST00000452950 SENP3Q9H4L4 574 aaPredicted RBP22.27■■□□□ 1.16
CSTF1-204ENST00000452950 PHF23Q9BUL5 403 aaPredicted RBP22.05■■□□□ 1.12
CSTF1-204ENST00000452950 FOXD1Q16676 465 aa20.75■□□□□ 0.91
CSTF1-204ENST00000452950 PLPPR3Q6T4P5 718 aa20.11■□□□□ 0.81
CSTF1-204ENST00000452950 PPP6R1Q9UPN7 881 aa19.6■□□□□ 0.73
CSTF1-204ENST00000452950 ADRA2BP18089 450 aa19.55■□□□□ 0.72
CSTF1-204ENST00000452950 PIAS4Q8N2W9 510 aaPredicted RBP19.44■□□□□ 0.7
CSTF1-204ENST00000452950 MSH5O43196 834 aa19.31■□□□□ 0.68
CSTF1-204ENST00000452950 POTEDQ86YR6 584 aa18.51■□□□□ 0.55
CSTF1-204ENST00000452950 MAPK8IP2Q13387 824 aaPredicted RBP17.91■□□□□ 0.46
CSTF1-204ENST00000452950 SCAF1Q9H7N4 1312 aaKnown RBP17.86■□□□□ 0.45
CSTF1-204ENST00000452950 DMRT2Q9Y5R5 561 aa17.7■□□□□ 0.42
CSTF1-204ENST00000452950 PPP4R3CPQ6ZMV5 832 aa17.67■□□□□ 0.42
CSTF1-204ENST00000452950 CNKSR2Q8WXI2 1034 aa17.27■□□□□ 0.36
CSTF1-204ENST00000452950 HOXD11P31277 338 aaPredicted RBP17.13■□□□□ 0.33
CSTF1-204ENST00000452950 RNF216Q9NWF9 866 aaPredicted RBP17.06■□□□□ 0.32
CSTF1-204ENST00000452950 NCBP3Q53F19 620 aaKnown RBP17.05■□□□□ 0.32
CSTF1-204ENST00000452950 DCAF8L1A6NGE4 600 aa17■□□□□ 0.31
CSTF1-204ENST00000452950 NPM3O75607 178 aaKnown RBP16.81■□□□□ 0.28
CSTF1-204ENST00000452950 KCNA4P22459 653 aa16.69■□□□□ 0.26
CSTF1-204ENST00000452950 EHMT2Q96KQ7 1210 aa16.64■□□□□ 0.25
CSTF1-204ENST00000452950 RNF39Q9H2S5 420 aa16.51■□□□□ 0.23
CSTF1-204ENST00000452950 CACNB1Q02641 598 aaPredicted RBP16.48■□□□□ 0.23
CSTF1-204ENST00000452950 DNAJC5BQ9UF47 199 aa16.47■□□□□ 0.23
CSTF1-204ENST00000452950 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.35■□□□□ 0.214e-7■■■■□ 22.7
CSTF1-204ENST00000452950 C1QBPQ07021 282 aaKnown RBP16.28■□□□□ 0.2
CSTF1-204ENST00000452950 U3KPZ7 1027 aaPredicted RBP16.01■□□□□ 0.15
CSTF1-204ENST00000452950 SLC4A2P04920 1241 aa16■□□□□ 0.15
CSTF1-204ENST00000452950 CSRNP3Q8WYN3 585 aa15.9■□□□□ 0.14
CSTF1-204ENST00000452950 SLC4A1APQ9BWU0 796 aaKnown RBP15.81■□□□□ 0.12
CSTF1-204ENST00000452950 SPINK5Q9NQ38 1064 aaPredicted RBP15.73■□□□□ 0.11
CSTF1-204ENST00000452950 CAPN15O75808 1086 aa15.7■□□□□ 0.1
CSTF1-204ENST00000452950 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.62■□□□□ 0.09
CSTF1-204ENST00000452950 HNRNPUL2Q1KMD3 747 aaKnown RBP15.62■□□□□ 0.09
CSTF1-204ENST00000452950 APLP2Q06481 763 aa15.56■□□□□ 0.08
CSTF1-204ENST00000452950 DSG3P32926 999 aa15.54■□□□□ 0.08
CSTF1-204ENST00000452950 SAMD1Q6SPF0 538 aaPredicted RBP15.54■□□□□ 0.08
CSTF1-204ENST00000452950 MYCNP04198 464 aaPredicted RBP15.52■□□□□ 0.08
CSTF1-204ENST00000452950 TRHP20396 242 aaPredicted RBP15.51■□□□□ 0.07
CSTF1-204ENST00000452950 FOXD4L1Q9NU39 408 aa15.48■□□□□ 0.07
CSTF1-204ENST00000452950 ZNF219Q9P2Y4 722 aaPredicted RBP15.44■□□□□ 0.06
CSTF1-204ENST00000452950 SLC24A1O60721 1099 aa15.38■□□□□ 0.05
CSTF1-204ENST00000452950 ABCB7O75027 752 aa15.35■□□□□ 0.05
CSTF1-204ENST00000452950 ZBTB22O15209 634 aa15.34■□□□□ 0.05
CSTF1-204ENST00000452950 ATF5Q9Y2D1 282 aaPredicted RBP15.18■□□□□ 0.02
CSTF1-204ENST00000452950 POLA2Q14181 598 aa15.15■□□□□ 0.02
CSTF1-204ENST00000452950 AMER1Q5JTC6 1135 aaPredicted RBP15.01□□□□□ -0.01
CSTF1-204ENST00000452950 RTN4Q9NQC3 1192 aaKnown RBP15□□□□□ -0.01
CSTF1-204ENST00000452950 ATXN8OSP0DMR3 200 aa14.98□□□□□ -0.01
CSTF1-204ENST00000452950 RBM42Q9BTD8 480 aaKnown RBP14.8□□□□□ -0.04
CSTF1-204ENST00000452950 ZBTB12Q9Y330 459 aaPredicted RBP14.8□□□□□ -0.04
CSTF1-204ENST00000452950 OSCARQ8IYS5 282 aa14.62□□□□□ -0.07
CSTF1-204ENST00000452950 FBLN2P98095 1184 aa14.55□□□□□ -0.08
CSTF1-204ENST00000452950 POTEHQ6S545 545 aa14.55□□□□□ -0.08
CSTF1-204ENST00000452950 AKT1S1Q96B36 256 aa14.52□□□□□ -0.09
CSTF1-204ENST00000452950 MKRN4PQ13434 485 aaPredicted RBP14.48□□□□□ -0.09
CSTF1-204ENST00000452950 CHRDL2Q6WN34 429 aa14.41□□□□□ -0.1
CSTF1-204ENST00000452950 REM2Q8IYK8 340 aaPredicted RBP14.4□□□□□ -0.1
CSTF1-204ENST00000452950 SPDYE2BA6NHP3 402 aa14.37□□□□□ -0.11
CSTF1-204ENST00000452950 SPDYE6P0CI01 402 aa14.37□□□□□ -0.11
CSTF1-204ENST00000452950 SPDYE2Q495Y8 402 aa14.37□□□□□ -0.11
CSTF1-204ENST00000452950 FKBP8Q14318 412 aa14.33□□□□□ -0.12
CSTF1-204ENST00000452950 ZNF692Q9BU19 519 aaPredicted RBP14.27□□□□□ -0.13
CSTF1-204ENST00000452950 PITPNM1O00562 1244 aa14.23□□□□□ -0.13
CSTF1-204ENST00000452950 SSUH2Q9Y2M2 353 aa14.2□□□□□ -0.14
CSTF1-204ENST00000452950 PIP4P2Q8N4L2 257 aa14.12□□□□□ -0.15
CSTF1-204ENST00000452950 SPDYE1Q8NFV5 336 aaPredicted RBP14.08□□□□□ -0.16
CSTF1-204ENST00000452950 CLEC11AQ9Y240 323 aa14.08□□□□□ -0.16
CSTF1-204ENST00000452950 FXR2P51116 673 aaKnown RBP eCLIP14.07□□□□□ -0.16
CSTF1-204ENST00000452950 PABPN1Q86U42 306 aaKnown RBP eCLIP14.06□□□□□ -0.16
CSTF1-204ENST00000452950 SPDYE4A6NLX3 237 aa13.91□□□□□ -0.18
CSTF1-204ENST00000452950 PRKAR2AP13861 404 aaKnown RBP13.88□□□□□ -0.19
CSTF1-204ENST00000452950 PRR29P0C7W0 189 aa13.87□□□□□ -0.19
CSTF1-204ENST00000452950 HAX1O00165 279 aa13.83□□□□□ -0.2
CSTF1-204ENST00000452950 PLCB2Q00722 1185 aa13.78□□□□□ -0.2
CSTF1-204ENST00000452950 CHADLQ6NUI6 762 aa13.78□□□□□ -0.2
CSTF1-204ENST00000452950 SP7Q8TDD2 431 aaPredicted RBP13.73□□□□□ -0.21
CSTF1-204ENST00000452950 STAG3Q9UJ98 1225 aa13.7□□□□□ -0.22
CSTF1-204ENST00000452950 EVX2Q03828 476 aa13.68□□□□□ -0.22
CSTF1-204ENST00000452950 BCANQ96GW7 911 aa13.63□□□□□ -0.23
CSTF1-204ENST00000452950 C19orf67A6NJJ6 358 aa13.61□□□□□ -0.23
CSTF1-204ENST00000452950 HAP1P54257 671 aaPredicted RBP13.61□□□□□ -0.23
CSTF1-204ENST00000452950 FARP1Q9Y4F1 1045 aaPredicted RBP13.59□□□□□ -0.23
CSTF1-204ENST00000452950 PROM2Q8N271 834 aa13.58□□□□□ -0.24
CSTF1-204ENST00000452950 CREBZFQ9NS37 354 aa13.56□□□□□ -0.24
CSTF1-204ENST00000452950 FBXO3Q9UK99 471 aa13.53□□□□□ -0.24
CSTF1-204ENST00000452950 PRKCSHP14314 528 aaPredicted RBP13.52□□□□□ -0.25
CSTF1-204ENST00000452950 TAOK2Q9UL54 1235 aa13.47□□□□□ -0.25
CSTF1-204ENST00000452950 DCAF8L2P0C7V8 631 aa13.44□□□□□ -0.26
CSTF1-204ENST00000452950 CD44P16070 742 aaKnown RBP13.44□□□□□ -0.26
CSTF1-204ENST00000452950 VSIG10Q8N0Z9 540 aa13.42□□□□□ -0.26
CSTF1-204ENST00000452950 GABBR2O75899 941 aa13.37□□□□□ -0.27
CSTF1-204ENST00000452950 MNX1P50219 401 aaPredicted RBP13.36□□□□□ -0.27
CSTF1-204ENST00000452950 NPM1P06748 294 aaKnown RBP eCLIP13.32□□□□□ -0.28
CSTF1-204ENST00000452950 VASPP50552 380 aaPredicted RBP13.3□□□□□ -0.28
CSTF1-204ENST00000452950 ZRANB1Q9UGI0 708 aa13.3□□□□□ -0.28
CSTF1-204ENST00000452950 MIER1Q8N108 512 aa13.28□□□□□ -0.28
CSTF1-204ENST00000452950 TPRNQ4KMQ1 711 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms