RNA–Protein interactions for RNA: ENST00000451744.1

LINC00458-203, long intergenic non-protein coding RNA 458, humanhuman

TSL 1 (best)

Gene LINC00458, Length 1,020 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-203ENST00000451744 AEBP2Q6ZN18 517 aaPredicted RBP30.49■■■□□ 2.47
LINC00458-203ENST00000451744 CHIC1Q5VXU3 224 aa28.95■■■□□ 2.22
LINC00458-203ENST00000451744 SENP3Q9H4L4 574 aaPredicted RBP25.98■■□□□ 1.75
LINC00458-203ENST00000451744 PHF23Q9BUL5 403 aaPredicted RBP25.66■■□□□ 1.7
LINC00458-203ENST00000451744 FOXD1Q16676 465 aa24.24■■□□□ 1.47
LINC00458-203ENST00000451744 PLPPR3Q6T4P5 718 aa23.13■■□□□ 1.29
LINC00458-203ENST00000451744 PPP6R1Q9UPN7 881 aa22.68■■□□□ 1.22
LINC00458-203ENST00000451744 PIAS4Q8N2W9 510 aaPredicted RBP22.66■■□□□ 1.22
LINC00458-203ENST00000451744 MSH5O43196 834 aa22.64■■□□□ 1.21
LINC00458-203ENST00000451744 ADRA2BP18089 450 aa22.62■■□□□ 1.21
LINC00458-203ENST00000451744 POTEDQ86YR6 584 aa22.53■■□□□ 1.2
LINC00458-203ENST00000451744 MAPK8IP2Q13387 824 aaPredicted RBP20.78■□□□□ 0.92
LINC00458-203ENST00000451744 SCAF1Q9H7N4 1312 aaKnown RBP20.65■□□□□ 0.9
LINC00458-203ENST00000451744 DMRT2Q9Y5R5 561 aa20.61■□□□□ 0.89
LINC00458-203ENST00000451744 PPP4R3CPQ6ZMV5 832 aa20.3■□□□□ 0.84
LINC00458-203ENST00000451744 CNKSR2Q8WXI2 1034 aa19.89■□□□□ 0.77
LINC00458-203ENST00000451744 HOXD11P31277 338 aaPredicted RBP19.84■□□□□ 0.77
LINC00458-203ENST00000451744 DCAF8L1A6NGE4 600 aa19.82■□□□□ 0.76
LINC00458-203ENST00000451744 RNF216Q9NWF9 866 aaPredicted RBP19.7■□□□□ 0.74
LINC00458-203ENST00000451744 NCBP3Q53F19 620 aaKnown RBP19.5■□□□□ 0.71
LINC00458-203ENST00000451744 CACNB1Q02641 598 aaPredicted RBP19.45■□□□□ 0.7
LINC00458-203ENST00000451744 RNF39Q9H2S5 420 aa19.33■□□□□ 0.68
LINC00458-203ENST00000451744 NPM3O75607 178 aaKnown RBP19.25■□□□□ 0.67
LINC00458-203ENST00000451744 DNAJC5BQ9UF47 199 aa19.1■□□□□ 0.65
LINC00458-203ENST00000451744 C1QBPQ07021 282 aaKnown RBP19.04■□□□□ 0.64
LINC00458-203ENST00000451744 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.94■□□□□ 0.62
LINC00458-203ENST00000451744 KCNA4P22459 653 aa18.91■□□□□ 0.62
LINC00458-203ENST00000451744 U3KPZ7 1027 aaPredicted RBP18.55■□□□□ 0.56
LINC00458-203ENST00000451744 SLC4A2P04920 1241 aa18.38■□□□□ 0.53
LINC00458-203ENST00000451744 SPINK5Q9NQ38 1064 aaPredicted RBP18.29■□□□□ 0.52
LINC00458-203ENST00000451744 CAPN15O75808 1086 aa18.25■□□□□ 0.51
LINC00458-203ENST00000451744 DSG3P32926 999 aa18.12■□□□□ 0.49
LINC00458-203ENST00000451744 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.98■□□□□ 0.47
LINC00458-203ENST00000451744 APLP2Q06481 763 aa17.98■□□□□ 0.47
LINC00458-203ENST00000451744 HNRNPUL2Q1KMD3 747 aaKnown RBP17.98■□□□□ 0.47
LINC00458-203ENST00000451744 TRHP20396 242 aaPredicted RBP17.97■□□□□ 0.47
LINC00458-203ENST00000451744 SAMD1Q6SPF0 538 aaPredicted RBP17.89■□□□□ 0.45
LINC00458-203ENST00000451744 ZNF219Q9P2Y4 722 aaPredicted RBP17.89■□□□□ 0.45
LINC00458-203ENST00000451744 ABCB7O75027 752 aa17.85■□□□□ 0.45
LINC00458-203ENST00000451744 SLC4A1APQ9BWU0 796 aaKnown RBP17.84■□□□□ 0.45
LINC00458-203ENST00000451744 MYCNP04198 464 aaPredicted RBP17.79■□□□□ 0.44
LINC00458-203ENST00000451744 FOXD4L1Q9NU39 408 aa17.61■□□□□ 0.41
LINC00458-203ENST00000451744 POTEHQ6S545 545 aa17.59■□□□□ 0.41
LINC00458-203ENST00000451744 POLA2Q14181 598 aa17.48■□□□□ 0.39
LINC00458-203ENST00000451744 ATF5Q9Y2D1 282 aaPredicted RBP17.41■□□□□ 0.38
LINC00458-203ENST00000451744 ZBTB22O15209 634 aa17.39■□□□□ 0.37
LINC00458-203ENST00000451744 RBM42Q9BTD8 480 aaKnown RBP17.26■□□□□ 0.35
LINC00458-203ENST00000451744 ZBTB12Q9Y330 459 aaPredicted RBP17.09■□□□□ 0.33
LINC00458-203ENST00000451744 ATXN8OSP0DMR3 200 aa17.03■□□□□ 0.32
LINC00458-203ENST00000451744 OSCARQ8IYS5 282 aa16.94■□□□□ 0.3
LINC00458-203ENST00000451744 CHRDL2Q6WN34 429 aa16.9■□□□□ 0.3
LINC00458-203ENST00000451744 AKT1S1Q96B36 256 aa16.88■□□□□ 0.29
LINC00458-203ENST00000451744 REM2Q8IYK8 340 aaPredicted RBP16.74■□□□□ 0.27
LINC00458-203ENST00000451744 FBLN2P98095 1184 aa16.7■□□□□ 0.26
LINC00458-203ENST00000451744 MKRN4PQ13434 485 aaPredicted RBP16.6■□□□□ 0.25
LINC00458-203ENST00000451744 CSRNP3Q8WYN3 585 aa16.59■□□□□ 0.25
LINC00458-203ENST00000451744 PITPNM1O00562 1244 aa16.58■□□□□ 0.24
LINC00458-203ENST00000451744 SPDYE2BA6NHP3 402 aa16.57■□□□□ 0.24
LINC00458-203ENST00000451744 SPDYE6P0CI01 402 aa16.57■□□□□ 0.24
LINC00458-203ENST00000451744 SPDYE2Q495Y8 402 aa16.57■□□□□ 0.24
LINC00458-203ENST00000451744 PIP4P2Q8N4L2 257 aa16.52■□□□□ 0.24
LINC00458-203ENST00000451744 EHMT2Q96KQ7 1210 aa16.44■□□□□ 0.22
LINC00458-203ENST00000451744 FXR2P51116 673 aaKnown RBP eCLIP16.4■□□□□ 0.22
LINC00458-203ENST00000451744 ZNF692Q9BU19 519 aaPredicted RBP16.4■□□□□ 0.22
LINC00458-203ENST00000451744 SSUH2Q9Y2M2 353 aa16.36■□□□□ 0.21
LINC00458-203ENST00000451744 CLEC11AQ9Y240 323 aa16.29■□□□□ 0.2
LINC00458-203ENST00000451744 SPDYE1Q8NFV5 336 aaPredicted RBP16.28■□□□□ 0.2
LINC00458-203ENST00000451744 SP7Q8TDD2 431 aaPredicted RBP16.24■□□□□ 0.19
LINC00458-203ENST00000451744 HAX1O00165 279 aa16.22■□□□□ 0.19
LINC00458-203ENST00000451744 PABPN1Q86U42 306 aaKnown RBP eCLIP16.17■□□□□ 0.18
LINC00458-203ENST00000451744 PRKAR2AP13861 404 aaKnown RBP16.15■□□□□ 0.18
LINC00458-203ENST00000451744 EVX2Q03828 476 aa16.03■□□□□ 0.16
LINC00458-203ENST00000451744 PRR29P0C7W0 189 aa16■□□□□ 0.15
LINC00458-203ENST00000451744 CHADLQ6NUI6 762 aa15.99■□□□□ 0.15
LINC00458-203ENST00000451744 C19orf67A6NJJ6 358 aa15.88■□□□□ 0.13
LINC00458-203ENST00000451744 SPDYE4A6NLX3 237 aa15.82■□□□□ 0.12
LINC00458-203ENST00000451744 FARP1Q9Y4F1 1045 aaPredicted RBP15.72■□□□□ 0.11
LINC00458-203ENST00000451744 STAG3Q9UJ98 1225 aa15.68■□□□□ 0.1
LINC00458-203ENST00000451744 GABBR2O75899 941 aa15.65■□□□□ 0.1
LINC00458-203ENST00000451744 CD44P16070 742 aaKnown RBP15.64■□□□□ 0.09
LINC00458-203ENST00000451744 CREBZFQ9NS37 354 aa15.61■□□□□ 0.09
LINC00458-203ENST00000451744 ZRANB1Q9UGI0 708 aa15.42■□□□□ 0.06
LINC00458-203ENST00000451744 PROM2Q8N271 834 aa15.41■□□□□ 0.06
LINC00458-203ENST00000451744 ZNF579Q8NAF0 562 aaKnown RBP15.38■□□□□ 0.05
LINC00458-203ENST00000451744 CLCN6P51797 869 aa15.34■□□□□ 0.05
LINC00458-203ENST00000451744 MNX1P50219 401 aaPredicted RBP15.33■□□□□ 0.04
LINC00458-203ENST00000451744 POTEIP0CG38 1075 aa15.32■□□□□ 0.04
LINC00458-203ENST00000451744 NPM1P06748 294 aaKnown RBP eCLIP15.31■□□□□ 0.04
LINC00458-203ENST00000451744 PAK3O75914 559 aaPredicted RBP15.28■□□□□ 0.04
LINC00458-203ENST00000451744 LHX8Q68G74 356 aa15.24■□□□□ 0.03
LINC00458-203ENST00000451744 DCBLD2Q96PD2 775 aa15.24■□□□□ 0.03
LINC00458-203ENST00000451744 PHF12Q96QT6 1004 aa15.23■□□□□ 0.03
LINC00458-203ENST00000451744 GALR2O43603 387 aaPredicted RBP15.22■□□□□ 0.03
LINC00458-203ENST00000451744 MIER1Q8N108 512 aa15.09■□□□□ 0.01
LINC00458-203ENST00000451744 TSPYL2Q9H2G4 693 aaPredicted RBP15.08■□□□□ 0
LINC00458-203ENST00000451744 FKBP8Q14318 412 aa15.07■□□□□ 0
LINC00458-203ENST00000451744 PLEKHG5O94827 1062 aa15.06■□□□□ 0
LINC00458-203ENST00000451744 MS4A3Q96HJ5 214 aa15.01□□□□□ -0.01
LINC00458-203ENST00000451744 PLCD3Q8N3E9 789 aa14.99□□□□□ -0.01
LINC00458-203ENST00000451744 CCDC61Q9Y6R9 512 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms