RNA–Protein interactions for RNA: ENST00000448879.5

SEMA3A-205, Transcript of semaphorin 3A, humanhuman

TSL 5

Gene SEMA3A, Length 534 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3A-205ENST00000448879 AEBP2Q6ZN18 517 aaPredicted RBP29.63■■■□□ 2.33
SEMA3A-205ENST00000448879 CHIC1Q5VXU3 224 aa28.41■■■□□ 2.14
SEMA3A-205ENST00000448879 SENP3Q9H4L4 574 aaPredicted RBP25.33■■□□□ 1.65
SEMA3A-205ENST00000448879 PHF23Q9BUL5 403 aaPredicted RBP25.01■■□□□ 1.59
SEMA3A-205ENST00000448879 FOXD1Q16676 465 aa23.53■■□□□ 1.36
SEMA3A-205ENST00000448879 PLPPR3Q6T4P5 718 aa22.85■■□□□ 1.25
SEMA3A-205ENST00000448879 ADRA2BP18089 450 aa22.15■■□□□ 1.14
SEMA3A-205ENST00000448879 PPP6R1Q9UPN7 881 aa22.15■■□□□ 1.14
SEMA3A-205ENST00000448879 PIAS4Q8N2W9 510 aaPredicted RBP22.13■■□□□ 1.13
SEMA3A-205ENST00000448879 MSH5O43196 834 aa22■■□□□ 1.11
SEMA3A-205ENST00000448879 POTEDQ86YR6 584 aa21.03■□□□□ 0.96
SEMA3A-205ENST00000448879 SCAF1Q9H7N4 1312 aaKnown RBP20.33■□□□□ 0.85
SEMA3A-205ENST00000448879 MAPK8IP2Q13387 824 aaPredicted RBP20.26■□□□□ 0.83
SEMA3A-205ENST00000448879 DMRT2Q9Y5R5 561 aa20.09■□□□□ 0.81
SEMA3A-205ENST00000448879 PPP4R3CPQ6ZMV5 832 aa20.05■□□□□ 0.8
SEMA3A-205ENST00000448879 CNKSR2Q8WXI2 1034 aa19.62■□□□□ 0.73
SEMA3A-205ENST00000448879 DCAF8L1A6NGE4 600 aa19.42■□□□□ 0.7
SEMA3A-205ENST00000448879 HOXD11P31277 338 aaPredicted RBP19.41■□□□□ 0.7
SEMA3A-205ENST00000448879 NCBP3Q53F19 620 aaKnown RBP19.41■□□□□ 0.7
SEMA3A-205ENST00000448879 RNF216Q9NWF9 866 aaPredicted RBP19.37■□□□□ 0.69
SEMA3A-205ENST00000448879 NPM3O75607 178 aaKnown RBP19.05■□□□□ 0.64
SEMA3A-205ENST00000448879 KCNA4P22459 653 aa18.9■□□□□ 0.62
SEMA3A-205ENST00000448879 CACNB1Q02641 598 aaPredicted RBP18.78■□□□□ 0.6
SEMA3A-205ENST00000448879 RNF39Q9H2S5 420 aa18.73■□□□□ 0.59
SEMA3A-205ENST00000448879 DNAJC5BQ9UF47 199 aa18.66■□□□□ 0.58
SEMA3A-205ENST00000448879 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.63■□□□□ 0.57
SEMA3A-205ENST00000448879 C1QBPQ07021 282 aaKnown RBP18.51■□□□□ 0.55
SEMA3A-205ENST00000448879 U3KPZ7 1027 aaPredicted RBP18.17■□□□□ 0.5
SEMA3A-205ENST00000448879 SLC4A2P04920 1241 aa18.09■□□□□ 0.49
SEMA3A-205ENST00000448879 SLC4A1APQ9BWU0 796 aaKnown RBP17.94■□□□□ 0.46
SEMA3A-205ENST00000448879 CAPN15O75808 1086 aa17.9■□□□□ 0.46
SEMA3A-205ENST00000448879 SPINK5Q9NQ38 1064 aaPredicted RBP17.85■□□□□ 0.45
SEMA3A-205ENST00000448879 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.81■□□□□ 0.44
SEMA3A-205ENST00000448879 HNRNPUL2Q1KMD3 747 aaKnown RBP17.81■□□□□ 0.44
SEMA3A-205ENST00000448879 APLP2Q06481 763 aa17.8■□□□□ 0.44
SEMA3A-205ENST00000448879 SAMD1Q6SPF0 538 aaPredicted RBP17.71■□□□□ 0.43
SEMA3A-205ENST00000448879 TRHP20396 242 aaPredicted RBP17.67■□□□□ 0.42
SEMA3A-205ENST00000448879 MYCNP04198 464 aaPredicted RBP17.66■□□□□ 0.42
SEMA3A-205ENST00000448879 DSG3P32926 999 aa17.63■□□□□ 0.41
SEMA3A-205ENST00000448879 ZNF219Q9P2Y4 722 aaPredicted RBP17.61■□□□□ 0.41
SEMA3A-205ENST00000448879 FOXD4L1Q9NU39 408 aa17.6■□□□□ 0.41
SEMA3A-205ENST00000448879 ABCB7O75027 752 aa17.48■□□□□ 0.39
SEMA3A-205ENST00000448879 ZBTB22O15209 634 aa17.33■□□□□ 0.36
SEMA3A-205ENST00000448879 POLA2Q14181 598 aa17.19■□□□□ 0.34
SEMA3A-205ENST00000448879 ATF5Q9Y2D1 282 aaPredicted RBP17.16■□□□□ 0.34
SEMA3A-205ENST00000448879 ATXN8OSP0DMR3 200 aa17■□□□□ 0.31
SEMA3A-205ENST00000448879 RBM42Q9BTD8 480 aaKnown RBP16.9■□□□□ 0.3
SEMA3A-205ENST00000448879 ZBTB12Q9Y330 459 aaPredicted RBP16.9■□□□□ 0.3
SEMA3A-205ENST00000448879 EHMT2Q96KQ7 1210 aa16.8■□□□□ 0.28
SEMA3A-205ENST00000448879 CSRNP3Q8WYN3 585 aa16.76■□□□□ 0.27
SEMA3A-205ENST00000448879 OSCARQ8IYS5 282 aa16.65■□□□□ 0.26
SEMA3A-205ENST00000448879 FBLN2P98095 1184 aa16.61■□□□□ 0.25
SEMA3A-205ENST00000448879 POTEHQ6S545 545 aa16.56■□□□□ 0.24
SEMA3A-205ENST00000448879 AKT1S1Q96B36 256 aa16.52■□□□□ 0.24
SEMA3A-205ENST00000448879 CHRDL2Q6WN34 429 aa16.4■□□□□ 0.22
SEMA3A-205ENST00000448879 MKRN4PQ13434 485 aaPredicted RBP16.38■□□□□ 0.21
SEMA3A-205ENST00000448879 SPDYE2BA6NHP3 402 aa16.35■□□□□ 0.21
SEMA3A-205ENST00000448879 SPDYE6P0CI01 402 aa16.35■□□□□ 0.21
SEMA3A-205ENST00000448879 SPDYE2Q495Y8 402 aa16.35■□□□□ 0.21
SEMA3A-205ENST00000448879 REM2Q8IYK8 340 aaPredicted RBP16.35■□□□□ 0.21
SEMA3A-205ENST00000448879 ZNF692Q9BU19 519 aaPredicted RBP16.24■□□□□ 0.19
SEMA3A-205ENST00000448879 PITPNM1O00562 1244 aa16.18■□□□□ 0.18
SEMA3A-205ENST00000448879 SSUH2Q9Y2M2 353 aa16.11■□□□□ 0.17
SEMA3A-205ENST00000448879 CLEC11AQ9Y240 323 aa16.06■□□□□ 0.16
SEMA3A-205ENST00000448879 PIP4P2Q8N4L2 257 aa16.05■□□□□ 0.16
SEMA3A-205ENST00000448879 SPDYE1Q8NFV5 336 aaPredicted RBP16.04■□□□□ 0.16
SEMA3A-205ENST00000448879 PABPN1Q86U42 306 aaKnown RBP eCLIP15.99■□□□□ 0.15
SEMA3A-205ENST00000448879 FXR2P51116 673 aaKnown RBP eCLIP15.95■□□□□ 0.14
SEMA3A-205ENST00000448879 SPDYE4A6NLX3 237 aa15.82■□□□□ 0.12
SEMA3A-205ENST00000448879 PRR29P0C7W0 189 aa15.8■□□□□ 0.12
SEMA3A-205ENST00000448879 PRKAR2AP13861 404 aaKnown RBP15.8■□□□□ 0.12
SEMA3A-205ENST00000448879 HAX1O00165 279 aa15.77■□□□□ 0.12
SEMA3A-205ENST00000448879 CHADLQ6NUI6 762 aa15.66■□□□□ 0.1
SEMA3A-205ENST00000448879 SP7Q8TDD2 431 aaPredicted RBP15.64■□□□□ 0.09
SEMA3A-205ENST00000448879 STAG3Q9UJ98 1225 aa15.61■□□□□ 0.09
SEMA3A-205ENST00000448879 EVX2Q03828 476 aa15.46■□□□□ 0.07
SEMA3A-205ENST00000448879 C19orf67A6NJJ6 358 aa15.44■□□□□ 0.06
SEMA3A-205ENST00000448879 FARP1Q9Y4F1 1045 aaPredicted RBP15.44■□□□□ 0.06
SEMA3A-205ENST00000448879 CREBZFQ9NS37 354 aa15.38■□□□□ 0.05
SEMA3A-205ENST00000448879 CD44P16070 742 aaKnown RBP15.33■□□□□ 0.04
SEMA3A-205ENST00000448879 PROM2Q8N271 834 aa15.33■□□□□ 0.04
SEMA3A-205ENST00000448879 FKBP8Q14318 412 aa15.29■□□□□ 0.04
SEMA3A-205ENST00000448879 NPM1P06748 294 aaKnown RBP eCLIP15.19■□□□□ 0.02
SEMA3A-205ENST00000448879 GABBR2O75899 941 aa15.18■□□□□ 0.02
SEMA3A-205ENST00000448879 ZRANB1Q9UGI0 708 aa15.16■□□□□ 0.02
SEMA3A-205ENST00000448879 PAK3O75914 559 aaPredicted RBP15.14■□□□□ 0.01
SEMA3A-205ENST00000448879 PLEKHG5O94827 1062 aa15.14■□□□□ 0.01
SEMA3A-205ENST00000448879 MIER1Q8N108 512 aa15.1■□□□□ 0.01
SEMA3A-205ENST00000448879 MNX1P50219 401 aaPredicted RBP15.08■□□□□ 0
SEMA3A-205ENST00000448879 PLCD3Q8N3E9 789 aa15.04■□□□□ -0
SEMA3A-205ENST00000448879 ZNF579Q8NAF0 562 aaKnown RBP15.04■□□□□ -0
SEMA3A-205ENST00000448879 CLCN6P51797 869 aa15.03■□□□□ -0
SEMA3A-205ENST00000448879 PHF12Q96QT6 1004 aa14.94□□□□□ -0.02
SEMA3A-205ENST00000448879 TSPYL2Q9H2G4 693 aaPredicted RBP14.93□□□□□ -0.02
SEMA3A-205ENST00000448879 DCBLD2Q96PD2 775 aa14.91□□□□□ -0.02
SEMA3A-205ENST00000448879 FBXO3Q9UK99 471 aa14.91□□□□□ -0.02
SEMA3A-205ENST00000448879 ZBTB47Q9UFB7 747 aaPredicted RBP14.89□□□□□ -0.03
SEMA3A-205ENST00000448879 GALR2O43603 387 aaPredicted RBP14.86□□□□□ -0.03
SEMA3A-205ENST00000448879 POTEIP0CG38 1075 aa14.8□□□□□ -0.04
SEMA3A-205ENST00000448879 RASEFQ8IZ41 740 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms