RNA–Protein interactions for RNA: ENST00000441080.2

PFDN4-202, Transcript of prefoldin subunit 4, humanhuman

TSL 5

Gene PFDN4, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN4-202ENST00000441080 AEBP2Q6ZN18 517 aaPredicted RBP24.21■■□□□ 1.47
PFDN4-202ENST00000441080 CHIC1Q5VXU3 224 aa23.89■■□□□ 1.41
PFDN4-202ENST00000441080 PHF23Q9BUL5 403 aaPredicted RBP21.02■□□□□ 0.96
PFDN4-202ENST00000441080 SENP3Q9H4L4 574 aaPredicted RBP20.53■□□□□ 0.88
PFDN4-202ENST00000441080 PLPPR3Q6T4P5 718 aa19.52■□□□□ 0.72
PFDN4-202ENST00000441080 FOXD1Q16676 465 aa19.01■□□□□ 0.63
PFDN4-202ENST00000441080 ADRA2BP18089 450 aa18.48■□□□□ 0.55
PFDN4-202ENST00000441080 PPP6R1Q9UPN7 881 aa18.46■□□□□ 0.55
PFDN4-202ENST00000441080 PIAS4Q8N2W9 510 aaPredicted RBP18.01■□□□□ 0.47
PFDN4-202ENST00000441080 MSH5O43196 834 aa17.46■□□□□ 0.39
PFDN4-202ENST00000441080 PPP4R3CPQ6ZMV5 832 aa17.22■□□□□ 0.35
PFDN4-202ENST00000441080 KCNA4P22459 653 aa17.09■□□□□ 0.33
PFDN4-202ENST00000441080 SCAF1Q9H7N4 1312 aaKnown RBP16.93■□□□□ 0.3
PFDN4-202ENST00000441080 NCBP3Q53F19 620 aaKnown RBP16.86■□□□□ 0.29
PFDN4-202ENST00000441080 MAPK8IP2Q13387 824 aaPredicted RBP16.69■□□□□ 0.26
PFDN4-202ENST00000441080 CNKSR2Q8WXI2 1034 aa16.68■□□□□ 0.26
PFDN4-202ENST00000441080 NPM3O75607 178 aaKnown RBP16.59■□□□□ 0.25
PFDN4-202ENST00000441080 DMRT2Q9Y5R5 561 aa16.41■□□□□ 0.22
PFDN4-202ENST00000441080 SLC4A1APQ9BWU0 796 aaKnown RBP16.33■□□□□ 0.2
PFDN4-202ENST00000441080 RNF216Q9NWF9 866 aaPredicted RBP16.3■□□□□ 0.2
PFDN4-202ENST00000441080 HOXD11P31277 338 aaPredicted RBP16.16■□□□□ 0.18
PFDN4-202ENST00000441080 POTEDQ86YR6 584 aa16.16■□□□□ 0.18
PFDN4-202ENST00000441080 EHMT2Q96KQ7 1210 aa16.16■□□□□ 0.18
PFDN4-202ENST00000441080 DNAJC5BQ9UF47 199 aa16.04■□□□□ 0.16
PFDN4-202ENST00000441080 CSRNP3Q8WYN3 585 aa15.82■□□□□ 0.12
PFDN4-202ENST00000441080 DCAF8L1A6NGE4 600 aa15.74■□□□□ 0.11
PFDN4-202ENST00000441080 ZBTB22O15209 634 aa15.72■□□□□ 0.11
PFDN4-202ENST00000441080 FOXD4L1Q9NU39 408 aa15.68■□□□□ 0.1
PFDN4-202ENST00000441080 SLC4A2P04920 1241 aa15.59■□□□□ 0.09
PFDN4-202ENST00000441080 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.44■□□□□ 0.062e-6■■□□□ 11.5
PFDN4-202ENST00000441080 MYCNP04198 464 aaPredicted RBP15.34■□□□□ 0.05
PFDN4-202ENST00000441080 U3KPZ7 1027 aaPredicted RBP15.18■□□□□ 0.02
PFDN4-202ENST00000441080 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.1■□□□□ 0.01
PFDN4-202ENST00000441080 HNRNPUL2Q1KMD3 747 aaKnown RBP15.1■□□□□ 0.01
PFDN4-202ENST00000441080 ATXN8OSP0DMR3 200 aa15.09■□□□□ 0.01
PFDN4-202ENST00000441080 SAMD1Q6SPF0 538 aaPredicted RBP15.06■□□□□ 0
PFDN4-202ENST00000441080 RNF39Q9H2S5 420 aa14.97□□□□□ -0.01
PFDN4-202ENST00000441080 APLP2Q06481 763 aa14.89□□□□□ -0.03
PFDN4-202ENST00000441080 ATF5Q9Y2D1 282 aaPredicted RBP14.88□□□□□ -0.03
PFDN4-202ENST00000441080 C1QBPQ07021 282 aaKnown RBP14.81□□□□□ -0.04
PFDN4-202ENST00000441080 SPINK5Q9NQ38 1064 aaPredicted RBP14.7□□□□□ -0.06
PFDN4-202ENST00000441080 CAPN15O75808 1086 aa14.65□□□□□ -0.06
PFDN4-202ENST00000441080 ZNF219Q9P2Y4 722 aaPredicted RBP14.65□□□□□ -0.06
PFDN4-202ENST00000441080 TRHP20396 242 aaPredicted RBP14.64□□□□□ -0.07
PFDN4-202ENST00000441080 CACNB1Q02641 598 aaPredicted RBP14.43□□□□□ -0.1
PFDN4-202ENST00000441080 POLA2Q14181 598 aa14.43□□□□□ -0.1
PFDN4-202ENST00000441080 ABCB7O75027 752 aa14.39□□□□□ -0.11
PFDN4-202ENST00000441080 DSG3P32926 999 aa14.32□□□□□ -0.12
PFDN4-202ENST00000441080 FKBP8Q14318 412 aa14.32□□□□□ -0.12
PFDN4-202ENST00000441080 FBLN2P98095 1184 aa14.28□□□□□ -0.12
PFDN4-202ENST00000441080 MKRN4PQ13434 485 aaPredicted RBP14.26□□□□□ -0.13
PFDN4-202ENST00000441080 ZBTB12Q9Y330 459 aaPredicted RBP14.24□□□□□ -0.13
PFDN4-202ENST00000441080 SPDYE4A6NLX3 237 aa14.07□□□□□ -0.16
PFDN4-202ENST00000441080 OSCARQ8IYS5 282 aa13.96□□□□□ -0.17
PFDN4-202ENST00000441080 SPDYE2BA6NHP3 402 aa13.86□□□□□ -0.19
PFDN4-202ENST00000441080 SPDYE6P0CI01 402 aa13.86□□□□□ -0.19
PFDN4-202ENST00000441080 SPDYE2Q495Y8 402 aa13.86□□□□□ -0.19
PFDN4-202ENST00000441080 PROM2Q8N271 834 aa13.85□□□□□ -0.19
PFDN4-202ENST00000441080 ZNF692Q9BU19 519 aaPredicted RBP13.84□□□□□ -0.19
PFDN4-202ENST00000441080 SSUH2Q9Y2M2 353 aa13.77□□□□□ -0.21
PFDN4-202ENST00000441080 FBXO3Q9UK99 471 aa13.74□□□□□ -0.21
PFDN4-202ENST00000441080 PABPN1Q86U42 306 aaKnown RBP eCLIP13.67□□□□□ -0.22
PFDN4-202ENST00000441080 RBM42Q9BTD8 480 aaKnown RBP13.67□□□□□ -0.22
PFDN4-202ENST00000441080 VASPP50552 380 aaPredicted RBP13.55□□□□□ -0.24
PFDN4-202ENST00000441080 AKT1S1Q96B36 256 aa13.54□□□□□ -0.24
PFDN4-202ENST00000441080 STAG3Q9UJ98 1225 aa13.5□□□□□ -0.25
PFDN4-202ENST00000441080 AMER1Q5JTC6 1135 aaPredicted RBP13.47□□□□□ -0.25
PFDN4-202ENST00000441080 RTN4Q9NQC3 1192 aaKnown RBP13.42□□□□□ -0.26
PFDN4-202ENST00000441080 SPDYE1Q8NFV5 336 aaPredicted RBP13.41□□□□□ -0.26
PFDN4-202ENST00000441080 REM2Q8IYK8 340 aaPredicted RBP13.4□□□□□ -0.26
PFDN4-202ENST00000441080 IFNLR1Q8IU57 520 aaPredicted RBP13.37□□□□□ -0.27
PFDN4-202ENST00000441080 PLCD3Q8N3E9 789 aa13.35□□□□□ -0.27
PFDN4-202ENST00000441080 CLEC11AQ9Y240 323 aa13.34□□□□□ -0.27
PFDN4-202ENST00000441080 MIER1Q8N108 512 aa13.32□□□□□ -0.28
PFDN4-202ENST00000441080 KLHL34Q8N239 644 aa13.28□□□□□ -0.28
PFDN4-202ENST00000441080 PLEKHG5O94827 1062 aa13.26□□□□□ -0.29
PFDN4-202ENST00000441080 PITPNM1O00562 1244 aa13.25□□□□□ -0.29
PFDN4-202ENST00000441080 PRR29P0C7W0 189 aa13.24□□□□□ -0.29
PFDN4-202ENST00000441080 SPOCK2Q92563 424 aa13.19□□□□□ -0.3
PFDN4-202ENST00000441080 ZBTB47Q9UFB7 747 aaPredicted RBP13.18□□□□□ -0.3
PFDN4-202ENST00000441080 CREBZFQ9NS37 354 aa13.12□□□□□ -0.31
PFDN4-202ENST00000441080 PKD2Q13563 968 aa13.01□□□□□ -0.33
PFDN4-202ENST00000441080 MNX1P50219 401 aaPredicted RBP12.99□□□□□ -0.33
PFDN4-202ENST00000441080 CHRDL2Q6WN34 429 aa12.99□□□□□ -0.33
PFDN4-202ENST00000441080 CHADLQ6NUI6 762 aa12.98□□□□□ -0.33
PFDN4-202ENST00000441080 CIZ1Q9ULV3 898 aaPredicted RBP12.96□□□□□ -0.33
PFDN4-202ENST00000441080 FXR2P51116 673 aaKnown RBP eCLIP12.94□□□□□ -0.34
PFDN4-202ENST00000441080 NUBP1P53384 320 aa12.94□□□□□ -0.34
PFDN4-202ENST00000441080 NPM1P06748 294 aaKnown RBP eCLIP12.93□□□□□ -0.34
PFDN4-202ENST00000441080 PRKAR2AP13861 404 aaKnown RBP12.93□□□□□ -0.34
PFDN4-202ENST00000441080 ECM2O94769 699 aaPredicted RBP12.91□□□□□ -0.34
PFDN4-202ENST00000441080 GSE1Q14687 1217 aa12.88□□□□□ -0.35
PFDN4-202ENST00000441080 PIP4P2Q8N4L2 257 aa12.88□□□□□ -0.35
PFDN4-202ENST00000441080 FARP1Q9Y4F1 1045 aaPredicted RBP12.88□□□□□ -0.35
PFDN4-202ENST00000441080 DCAF8Q5TAQ9 597 aa12.86□□□□□ -0.35
PFDN4-202ENST00000441080 FAM212AQ96EL1 285 aa12.86□□□□□ -0.35
PFDN4-202ENST00000441080 DCAF8L2P0C7V8 631 aa12.85□□□□□ -0.35
PFDN4-202ENST00000441080 RASEFQ8IZ41 740 aa12.84□□□□□ -0.35
PFDN4-202ENST00000441080 TRIM41Q8WV44 630 aa12.83□□□□□ -0.36
PFDN4-202ENST00000441080 RGL2O15211 777 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms