RNA–Protein interactions for RNA: ENST00000427193.1

C9orf3-205, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-205ENST00000427193 AEBP2Q6ZN18 517 aaPredicted RBP33.16■■■□□ 2.9
C9orf3-205ENST00000427193 CHIC1Q5VXU3 224 aa31.83■■■□□ 2.69
C9orf3-205ENST00000427193 SENP3Q9H4L4 574 aaPredicted RBP28.32■■■□□ 2.12
C9orf3-205ENST00000427193 PHF23Q9BUL5 403 aaPredicted RBP27.95■■■□□ 2.06
C9orf3-205ENST00000427193 FOXD1Q16676 465 aa26.3■■□□□ 1.8
C9orf3-205ENST00000427193 PLPPR3Q6T4P5 718 aa25.6■■□□□ 1.69
C9orf3-205ENST00000427193 PPP6R1Q9UPN7 881 aa24.79■■□□□ 1.56
C9orf3-205ENST00000427193 ADRA2BP18089 450 aa24.74■■□□□ 1.55
C9orf3-205ENST00000427193 PIAS4Q8N2W9 510 aaPredicted RBP24.67■■□□□ 1.54
C9orf3-205ENST00000427193 MSH5O43196 834 aa24.57■■□□□ 1.52
C9orf3-205ENST00000427193 POTEDQ86YR6 584 aa23.41■■□□□ 1.34
C9orf3-205ENST00000427193 SCAF1Q9H7N4 1312 aaKnown RBP22.73■■□□□ 1.23
C9orf3-205ENST00000427193 MAPK8IP2Q13387 824 aaPredicted RBP22.61■■□□□ 1.21
C9orf3-205ENST00000427193 DMRT2Q9Y5R5 561 aa22.49■■□□□ 1.19
C9orf3-205ENST00000427193 PPP4R3CPQ6ZMV5 832 aa22.45■■□□□ 1.18
C9orf3-205ENST00000427193 CNKSR2Q8WXI2 1034 aa21.99■■□□□ 1.11
C9orf3-205ENST00000427193 HOXD11P31277 338 aaPredicted RBP21.79■■□□□ 1.08
C9orf3-205ENST00000427193 NCBP3Q53F19 620 aaKnown RBP21.72■■□□□ 1.07
C9orf3-205ENST00000427193 RNF216Q9NWF9 866 aaPredicted RBP21.72■■□□□ 1.07
C9orf3-205ENST00000427193 DCAF8L1A6NGE4 600 aa21.51■■□□□ 1.03
C9orf3-205ENST00000427193 NPM3O75607 178 aaKnown RBP21.35■■□□□ 1.01
C9orf3-205ENST00000427193 KCNA4P22459 653 aa21.19■□□□□ 0.98
C9orf3-205ENST00000427193 DNAJC5BQ9UF47 199 aa21.04■□□□□ 0.96
C9orf3-205ENST00000427193 RNF39Q9H2S5 420 aa20.96■□□□□ 0.95
C9orf3-205ENST00000427193 CACNB1Q02641 598 aaPredicted RBP20.86■□□□□ 0.93
C9orf3-205ENST00000427193 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.74■□□□□ 0.91
C9orf3-205ENST00000427193 C1QBPQ07021 282 aaKnown RBP20.7■□□□□ 0.9
C9orf3-205ENST00000427193 U3KPZ7 1027 aaPredicted RBP20.33■□□□□ 0.85
C9orf3-205ENST00000427193 SLC4A2P04920 1241 aa20.3■□□□□ 0.84
C9orf3-205ENST00000427193 SLC4A1APQ9BWU0 796 aaKnown RBP20.09■□□□□ 0.81
C9orf3-205ENST00000427193 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.93■□□□□ 0.78
C9orf3-205ENST00000427193 HNRNPUL2Q1KMD3 747 aaKnown RBP19.93■□□□□ 0.78
C9orf3-205ENST00000427193 SPINK5Q9NQ38 1064 aaPredicted RBP19.92■□□□□ 0.78
C9orf3-205ENST00000427193 CAPN15O75808 1086 aa19.9■□□□□ 0.78
C9orf3-205ENST00000427193 APLP2Q06481 763 aa19.89■□□□□ 0.77
C9orf3-205ENST00000427193 SAMD1Q6SPF0 538 aaPredicted RBP19.81■□□□□ 0.76
C9orf3-205ENST00000427193 MYCNP04198 464 aaPredicted RBP19.79■□□□□ 0.76
C9orf3-205ENST00000427193 FOXD4L1Q9NU39 408 aa19.73■□□□□ 0.75
C9orf3-205ENST00000427193 DSG3P32926 999 aa19.72■□□□□ 0.75
C9orf3-205ENST00000427193 ZNF219Q9P2Y4 722 aaPredicted RBP19.68■□□□□ 0.74
C9orf3-205ENST00000427193 TRHP20396 242 aaPredicted RBP19.64■□□□□ 0.73
C9orf3-205ENST00000427193 ZBTB22O15209 634 aa19.47■□□□□ 0.71
C9orf3-205ENST00000427193 ABCB7O75027 752 aa19.43■□□□□ 0.7
C9orf3-205ENST00000427193 ATF5Q9Y2D1 282 aaPredicted RBP19.23■□□□□ 0.67
C9orf3-205ENST00000427193 POLA2Q14181 598 aa19.19■□□□□ 0.66
C9orf3-205ENST00000427193 ATXN8OSP0DMR3 200 aa19.13■□□□□ 0.65
C9orf3-205ENST00000427193 ZBTB12Q9Y330 459 aaPredicted RBP18.9■□□□□ 0.62
C9orf3-205ENST00000427193 RBM42Q9BTD8 480 aaKnown RBP18.87■□□□□ 0.61
C9orf3-205ENST00000427193 CSRNP3Q8WYN3 585 aa18.86■□□□□ 0.61
C9orf3-205ENST00000427193 EHMT2Q96KQ7 1210 aa18.76■□□□□ 0.59
C9orf3-205ENST00000427193 OSCARQ8IYS5 282 aa18.56■□□□□ 0.56
C9orf3-205ENST00000427193 FBLN2P98095 1184 aa18.54■□□□□ 0.56
C9orf3-205ENST00000427193 AKT1S1Q96B36 256 aa18.48■□□□□ 0.55
C9orf3-205ENST00000427193 POTEHQ6S545 545 aa18.42■□□□□ 0.54
C9orf3-205ENST00000427193 MKRN4PQ13434 485 aaPredicted RBP18.37■□□□□ 0.53
C9orf3-205ENST00000427193 SPDYE2BA6NHP3 402 aa18.32■□□□□ 0.52
C9orf3-205ENST00000427193 SPDYE6P0CI01 402 aa18.32■□□□□ 0.52
C9orf3-205ENST00000427193 SPDYE2Q495Y8 402 aa18.32■□□□□ 0.52
C9orf3-205ENST00000427193 CHRDL2Q6WN34 429 aa18.28■□□□□ 0.52
C9orf3-205ENST00000427193 REM2Q8IYK8 340 aaPredicted RBP18.27■□□□□ 0.52
C9orf3-205ENST00000427193 ZNF692Q9BU19 519 aaPredicted RBP18.12■□□□□ 0.49
C9orf3-205ENST00000427193 SSUH2Q9Y2M2 353 aa18.09■□□□□ 0.49
C9orf3-205ENST00000427193 PITPNM1O00562 1244 aa18.06■□□□□ 0.48
C9orf3-205ENST00000427193 SPDYE1Q8NFV5 336 aaPredicted RBP17.92■□□□□ 0.46
C9orf3-205ENST00000427193 PIP4P2Q8N4L2 257 aa17.9■□□□□ 0.46
C9orf3-205ENST00000427193 FXR2P51116 673 aaKnown RBP eCLIP17.87■□□□□ 0.45
C9orf3-205ENST00000427193 PABPN1Q86U42 306 aaKnown RBP eCLIP17.85■□□□□ 0.45
C9orf3-205ENST00000427193 CLEC11AQ9Y240 323 aa17.83■□□□□ 0.44
C9orf3-205ENST00000427193 SPDYE4A6NLX3 237 aa17.69■□□□□ 0.42
C9orf3-205ENST00000427193 PRR29P0C7W0 189 aa17.61■□□□□ 0.41
C9orf3-205ENST00000427193 PRKAR2AP13861 404 aaKnown RBP17.6■□□□□ 0.41
C9orf3-205ENST00000427193 HAX1O00165 279 aa17.5■□□□□ 0.39
C9orf3-205ENST00000427193 STAG3Q9UJ98 1225 aa17.48■□□□□ 0.39
C9orf3-205ENST00000427193 CHADLQ6NUI6 762 aa17.43■□□□□ 0.38
C9orf3-205ENST00000427193 SP7Q8TDD2 431 aaPredicted RBP17.41■□□□□ 0.38
C9orf3-205ENST00000427193 PROM2Q8N271 834 aa17.33■□□□□ 0.36
C9orf3-205ENST00000427193 C19orf67A6NJJ6 358 aa17.28■□□□□ 0.36
C9orf3-205ENST00000427193 EVX2Q03828 476 aa17.25■□□□□ 0.35
C9orf3-205ENST00000427193 FARP1Q9Y4F1 1045 aaPredicted RBP17.25■□□□□ 0.35
C9orf3-205ENST00000427193 CREBZFQ9NS37 354 aa17.22■□□□□ 0.35
C9orf3-205ENST00000427193 FKBP8Q14318 412 aa17.1■□□□□ 0.33
C9orf3-205ENST00000427193 CD44P16070 742 aaKnown RBP17.07■□□□□ 0.32
C9orf3-205ENST00000427193 NPM1P06748 294 aaKnown RBP eCLIP16.96■□□□□ 0.31
C9orf3-205ENST00000427193 MNX1P50219 401 aaPredicted RBP16.96■□□□□ 0.31
C9orf3-205ENST00000427193 GABBR2O75899 941 aa16.93■□□□□ 0.3
C9orf3-205ENST00000427193 PLEKHG5O94827 1062 aa16.87■□□□□ 0.29
C9orf3-205ENST00000427193 CLCN6P51797 869 aa16.87■□□□□ 0.29
C9orf3-205ENST00000427193 ZRANB1Q9UGI0 708 aa16.87■□□□□ 0.29
C9orf3-205ENST00000427193 PAK3O75914 559 aaPredicted RBP16.84■□□□□ 0.29
C9orf3-205ENST00000427193 ZNF579Q8NAF0 562 aaKnown RBP16.84■□□□□ 0.29
C9orf3-205ENST00000427193 MIER1Q8N108 512 aa16.83■□□□□ 0.28
C9orf3-205ENST00000427193 PLCD3Q8N3E9 789 aa16.75■□□□□ 0.27
C9orf3-205ENST00000427193 FBXO3Q9UK99 471 aa16.73■□□□□ 0.27
C9orf3-205ENST00000427193 ZBTB47Q9UFB7 747 aaPredicted RBP16.67■□□□□ 0.26
C9orf3-205ENST00000427193 PHF12Q96QT6 1004 aa16.63■□□□□ 0.25
C9orf3-205ENST00000427193 TSPYL2Q9H2G4 693 aaPredicted RBP16.6■□□□□ 0.25
C9orf3-205ENST00000427193 GALR2O43603 387 aaPredicted RBP16.57■□□□□ 0.24
C9orf3-205ENST00000427193 DCBLD2Q96PD2 775 aa16.56■□□□□ 0.24
C9orf3-205ENST00000427193 POTEIP0CG38 1075 aa16.55■□□□□ 0.24
C9orf3-205ENST00000427193 RASEFQ8IZ41 740 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms