RNA–Protein interactions for RNA: ENST00000426471.6

LINC00993-202, long intergenic non-protein coding RNA 993, humanhuman

TSL 2

Gene LINC00993, Length 545 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00993-202ENST00000426471 AEBP2Q6ZN18 517 aaPredicted RBP29.76■■■□□ 2.35
LINC00993-202ENST00000426471 CHIC1Q5VXU3 224 aa28.55■■■□□ 2.16
LINC00993-202ENST00000426471 SENP3Q9H4L4 574 aaPredicted RBP25.46■■□□□ 1.67
LINC00993-202ENST00000426471 PHF23Q9BUL5 403 aaPredicted RBP25.14■■□□□ 1.62
LINC00993-202ENST00000426471 FOXD1Q16676 465 aa23.64■■□□□ 1.37
LINC00993-202ENST00000426471 PLPPR3Q6T4P5 718 aa22.98■■□□□ 1.27
LINC00993-202ENST00000426471 ADRA2BP18089 450 aa22.27■■□□□ 1.16
LINC00993-202ENST00000426471 PPP6R1Q9UPN7 881 aa22.26■■□□□ 1.15
LINC00993-202ENST00000426471 PIAS4Q8N2W9 510 aaPredicted RBP22.24■■□□□ 1.15
LINC00993-202ENST00000426471 MSH5O43196 834 aa22.1■■□□□ 1.13
LINC00993-202ENST00000426471 POTEDQ86YR6 584 aa21.1■□□□□ 0.97
LINC00993-202ENST00000426471 SCAF1Q9H7N4 1312 aaKnown RBP20.46■□□□□ 0.87
LINC00993-202ENST00000426471 MAPK8IP2Q13387 824 aaPredicted RBP20.36■□□□□ 0.85
LINC00993-202ENST00000426471 DMRT2Q9Y5R5 561 aa20.18■□□□□ 0.82
LINC00993-202ENST00000426471 PPP4R3CPQ6ZMV5 832 aa20.17■□□□□ 0.82
LINC00993-202ENST00000426471 CNKSR2Q8WXI2 1034 aa19.73■□□□□ 0.75
LINC00993-202ENST00000426471 NCBP3Q53F19 620 aaKnown RBP19.55■□□□□ 0.72
LINC00993-202ENST00000426471 DCAF8L1A6NGE4 600 aa19.53■□□□□ 0.72
LINC00993-202ENST00000426471 HOXD11P31277 338 aaPredicted RBP19.5■□□□□ 0.71
LINC00993-202ENST00000426471 RNF216Q9NWF9 866 aaPredicted RBP19.47■□□□□ 0.71
LINC00993-202ENST00000426471 NPM3O75607 178 aaKnown RBP19.16■□□□□ 0.66
LINC00993-202ENST00000426471 KCNA4P22459 653 aa19.02■□□□□ 0.64
LINC00993-202ENST00000426471 CACNB1Q02641 598 aaPredicted RBP18.87■□□□□ 0.61
LINC00993-202ENST00000426471 RNF39Q9H2S5 420 aa18.81■□□□□ 0.6
LINC00993-202ENST00000426471 DNAJC5BQ9UF47 199 aa18.75■□□□□ 0.59
LINC00993-202ENST00000426471 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.74■□□□□ 0.59
LINC00993-202ENST00000426471 C1QBPQ07021 282 aaKnown RBP18.6■□□□□ 0.57
LINC00993-202ENST00000426471 U3KPZ7 1027 aaPredicted RBP18.25■□□□□ 0.51
LINC00993-202ENST00000426471 SLC4A2P04920 1241 aa18.19■□□□□ 0.5
LINC00993-202ENST00000426471 SLC4A1APQ9BWU0 796 aaKnown RBP18.07■□□□□ 0.48
LINC00993-202ENST00000426471 CAPN15O75808 1086 aa18■□□□□ 0.47
LINC00993-202ENST00000426471 SPINK5Q9NQ38 1064 aaPredicted RBP17.94■□□□□ 0.46
LINC00993-202ENST00000426471 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.92■□□□□ 0.46
LINC00993-202ENST00000426471 HNRNPUL2Q1KMD3 747 aaKnown RBP17.92■□□□□ 0.46
LINC00993-202ENST00000426471 APLP2Q06481 763 aa17.91■□□□□ 0.46
LINC00993-202ENST00000426471 SAMD1Q6SPF0 538 aaPredicted RBP17.81■□□□□ 0.44
LINC00993-202ENST00000426471 MYCNP04198 464 aaPredicted RBP17.77■□□□□ 0.44
LINC00993-202ENST00000426471 TRHP20396 242 aaPredicted RBP17.77■□□□□ 0.44
LINC00993-202ENST00000426471 DSG3P32926 999 aa17.71■□□□□ 0.43
LINC00993-202ENST00000426471 FOXD4L1Q9NU39 408 aa17.71■□□□□ 0.43
LINC00993-202ENST00000426471 ZNF219Q9P2Y4 722 aaPredicted RBP17.7■□□□□ 0.42
LINC00993-202ENST00000426471 ABCB7O75027 752 aa17.58■□□□□ 0.4
LINC00993-202ENST00000426471 ZBTB22O15209 634 aa17.43■□□□□ 0.38
LINC00993-202ENST00000426471 POLA2Q14181 598 aa17.29■□□□□ 0.36
LINC00993-202ENST00000426471 ATF5Q9Y2D1 282 aaPredicted RBP17.26■□□□□ 0.35
LINC00993-202ENST00000426471 ATXN8OSP0DMR3 200 aa17.11■□□□□ 0.33
LINC00993-202ENST00000426471 ZBTB12Q9Y330 459 aaPredicted RBP17■□□□□ 0.31
LINC00993-202ENST00000426471 RBM42Q9BTD8 480 aaKnown RBP16.98■□□□□ 0.31
LINC00993-202ENST00000426471 EHMT2Q96KQ7 1210 aa16.93■□□□□ 0.3
LINC00993-202ENST00000426471 CSRNP3Q8WYN3 585 aa16.88■□□□□ 0.29
LINC00993-202ENST00000426471 FBLN2P98095 1184 aa16.72■□□□□ 0.27
LINC00993-202ENST00000426471 OSCARQ8IYS5 282 aa16.72■□□□□ 0.27
LINC00993-202ENST00000426471 POTEHQ6S545 545 aa16.62■□□□□ 0.25
LINC00993-202ENST00000426471 AKT1S1Q96B36 256 aa16.6■□□□□ 0.25
LINC00993-202ENST00000426471 CHRDL2Q6WN34 429 aa16.48■□□□□ 0.23
LINC00993-202ENST00000426471 MKRN4PQ13434 485 aaPredicted RBP16.47■□□□□ 0.23
LINC00993-202ENST00000426471 SPDYE2BA6NHP3 402 aa16.45■□□□□ 0.22
LINC00993-202ENST00000426471 SPDYE6P0CI01 402 aa16.45■□□□□ 0.22
LINC00993-202ENST00000426471 SPDYE2Q495Y8 402 aa16.45■□□□□ 0.22
LINC00993-202ENST00000426471 REM2Q8IYK8 340 aaPredicted RBP16.44■□□□□ 0.22
LINC00993-202ENST00000426471 ZNF692Q9BU19 519 aaPredicted RBP16.33■□□□□ 0.2
LINC00993-202ENST00000426471 PITPNM1O00562 1244 aa16.26■□□□□ 0.19
LINC00993-202ENST00000426471 SSUH2Q9Y2M2 353 aa16.2■□□□□ 0.18
LINC00993-202ENST00000426471 CLEC11AQ9Y240 323 aa16.15■□□□□ 0.18
LINC00993-202ENST00000426471 SPDYE1Q8NFV5 336 aaPredicted RBP16.14■□□□□ 0.17
LINC00993-202ENST00000426471 PIP4P2Q8N4L2 257 aa16.11■□□□□ 0.17
LINC00993-202ENST00000426471 PABPN1Q86U42 306 aaKnown RBP eCLIP16.08■□□□□ 0.16
LINC00993-202ENST00000426471 FXR2P51116 673 aaKnown RBP eCLIP16.03■□□□□ 0.16
LINC00993-202ENST00000426471 SPDYE4A6NLX3 237 aa15.92■□□□□ 0.14
LINC00993-202ENST00000426471 PRR29P0C7W0 189 aa15.89■□□□□ 0.13
LINC00993-202ENST00000426471 PRKAR2AP13861 404 aaKnown RBP15.89■□□□□ 0.13
LINC00993-202ENST00000426471 HAX1O00165 279 aa15.85■□□□□ 0.13
LINC00993-202ENST00000426471 CHADLQ6NUI6 762 aa15.75■□□□□ 0.11
LINC00993-202ENST00000426471 STAG3Q9UJ98 1225 aa15.72■□□□□ 0.11
LINC00993-202ENST00000426471 SP7Q8TDD2 431 aaPredicted RBP15.69■□□□□ 0.1
LINC00993-202ENST00000426471 EVX2Q03828 476 aa15.52■□□□□ 0.08
LINC00993-202ENST00000426471 FARP1Q9Y4F1 1045 aaPredicted RBP15.52■□□□□ 0.08
LINC00993-202ENST00000426471 C19orf67A6NJJ6 358 aa15.51■□□□□ 0.07
LINC00993-202ENST00000426471 CREBZFQ9NS37 354 aa15.46■□□□□ 0.07
LINC00993-202ENST00000426471 PROM2Q8N271 834 aa15.43■□□□□ 0.06
LINC00993-202ENST00000426471 CD44P16070 742 aaKnown RBP15.4■□□□□ 0.06
LINC00993-202ENST00000426471 FKBP8Q14318 412 aa15.4■□□□□ 0.06
LINC00993-202ENST00000426471 NPM1P06748 294 aaKnown RBP eCLIP15.3■□□□□ 0.04
LINC00993-202ENST00000426471 PLEKHG5O94827 1062 aa15.26■□□□□ 0.03
LINC00993-202ENST00000426471 GABBR2O75899 941 aa15.25■□□□□ 0.03
LINC00993-202ENST00000426471 PAK3O75914 559 aaPredicted RBP15.24■□□□□ 0.03
LINC00993-202ENST00000426471 ZRANB1Q9UGI0 708 aa15.24■□□□□ 0.03
LINC00993-202ENST00000426471 MIER1Q8N108 512 aa15.22■□□□□ 0.03
LINC00993-202ENST00000426471 MNX1P50219 401 aaPredicted RBP15.16■□□□□ 0.02
LINC00993-202ENST00000426471 PLCD3Q8N3E9 789 aa15.16■□□□□ 0.02
LINC00993-202ENST00000426471 ZNF579Q8NAF0 562 aaKnown RBP15.12■□□□□ 0.01
LINC00993-202ENST00000426471 CLCN6P51797 869 aa15.11■□□□□ 0.01
LINC00993-202ENST00000426471 FBXO3Q9UK99 471 aa15.03■□□□□ -0
LINC00993-202ENST00000426471 TSPYL2Q9H2G4 693 aaPredicted RBP15.02■□□□□ -0
LINC00993-202ENST00000426471 PHF12Q96QT6 1004 aa15.01□□□□□ -0.01
LINC00993-202ENST00000426471 ZBTB47Q9UFB7 747 aaPredicted RBP15□□□□□ -0.01
LINC00993-202ENST00000426471 DCBLD2Q96PD2 775 aa14.99□□□□□ -0.01
LINC00993-202ENST00000426471 GALR2O43603 387 aaPredicted RBP14.93□□□□□ -0.02
LINC00993-202ENST00000426471 RASEFQ8IZ41 740 aa14.87□□□□□ -0.03
LINC00993-202ENST00000426471 POTEIP0CG38 1075 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms