RNA–Protein interactions for RNA: ENST00000419023.2

VPS45-203, Transcript of vacuolar protein sorting 45 homolog, humanhuman

TSL 3

Gene VPS45, Length 977 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS45-203ENST00000419023 AEBP2Q6ZN18 517 aaPredicted RBP25.96■■□□□ 1.75
VPS45-203ENST00000419023 CHIC1Q5VXU3 224 aa25.4■■□□□ 1.66
VPS45-203ENST00000419023 PHF23Q9BUL5 403 aaPredicted RBP22.37■■□□□ 1.17
VPS45-203ENST00000419023 SENP3Q9H4L4 574 aaPredicted RBP21.99■■□□□ 1.11
VPS45-203ENST00000419023 PLPPR3Q6T4P5 718 aa20.65■□□□□ 0.9
VPS45-203ENST00000419023 FOXD1Q16676 465 aa20.42■□□□□ 0.86
VPS45-203ENST00000419023 ADRA2BP18089 450 aa19.73■□□□□ 0.75
VPS45-203ENST00000419023 PPP6R1Q9UPN7 881 aa19.73■□□□□ 0.75
VPS45-203ENST00000419023 PIAS4Q8N2W9 510 aaPredicted RBP19.29■□□□□ 0.68
VPS45-203ENST00000419023 MSH5O43196 834 aa18.77■□□□□ 0.6
VPS45-203ENST00000419023 PPP4R3CPQ6ZMV5 832 aa18.23■□□□□ 0.51
VPS45-203ENST00000419023 SCAF1Q9H7N4 1312 aaKnown RBP17.99■□□□□ 0.47
VPS45-203ENST00000419023 KCNA4P22459 653 aa17.92■□□□□ 0.46
VPS45-203ENST00000419023 MAPK8IP2Q13387 824 aaPredicted RBP17.88■□□□□ 0.45
VPS45-203ENST00000419023 NCBP3Q53F19 620 aaKnown RBP17.76■□□□□ 0.43
VPS45-203ENST00000419023 CNKSR2Q8WXI2 1034 aa17.69■□□□□ 0.42
VPS45-203ENST00000419023 DMRT2Q9Y5R5 561 aa17.56■□□□□ 0.4
VPS45-203ENST00000419023 NPM3O75607 178 aaKnown RBP17.52■□□□□ 0.4
VPS45-203ENST00000419023 RNF216Q9NWF9 866 aaPredicted RBP17.32■□□□□ 0.36
VPS45-203ENST00000419023 HOXD11P31277 338 aaPredicted RBP17.22■□□□□ 0.35
VPS45-203ENST00000419023 SLC4A1APQ9BWU0 796 aaKnown RBP17.06■□□□□ 0.32
VPS45-203ENST00000419023 POTEDQ86YR6 584 aa16.99■□□□□ 0.31
VPS45-203ENST00000419023 DNAJC5BQ9UF47 199 aa16.92■□□□□ 0.3
VPS45-203ENST00000419023 DCAF8L1A6NGE4 600 aa16.86■□□□□ 0.29
VPS45-203ENST00000419023 EHMT2Q96KQ7 1210 aa16.7■□□□□ 0.26
VPS45-203ENST00000419023 SLC4A2P04920 1241 aa16.52■□□□□ 0.24
VPS45-203ENST00000419023 ZBTB22O15209 634 aa16.48■□□□□ 0.23
VPS45-203ENST00000419023 CSRNP3Q8WYN3 585 aa16.45■□□□□ 0.22
VPS45-203ENST00000419023 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.45■□□□□ 0.22
VPS45-203ENST00000419023 FOXD4L1Q9NU39 408 aa16.44■□□□□ 0.22
VPS45-203ENST00000419023 U3KPZ7 1027 aaPredicted RBP16.19■□□□□ 0.18
VPS45-203ENST00000419023 MYCNP04198 464 aaPredicted RBP16.17■□□□□ 0.18
VPS45-203ENST00000419023 RNF39Q9H2S5 420 aa16.1■□□□□ 0.17
VPS45-203ENST00000419023 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.97■□□□□ 0.15
VPS45-203ENST00000419023 HNRNPUL2Q1KMD3 747 aaKnown RBP15.97■□□□□ 0.15
VPS45-203ENST00000419023 SAMD1Q6SPF0 538 aaPredicted RBP15.92■□□□□ 0.14
VPS45-203ENST00000419023 C1QBPQ07021 282 aaKnown RBP15.9■□□□□ 0.14
VPS45-203ENST00000419023 ATXN8OSP0DMR3 200 aa15.82■□□□□ 0.12
VPS45-203ENST00000419023 APLP2Q06481 763 aa15.78■□□□□ 0.12
VPS45-203ENST00000419023 ATF5Q9Y2D1 282 aaPredicted RBP15.77■□□□□ 0.12
VPS45-203ENST00000419023 SPINK5Q9NQ38 1064 aaPredicted RBP15.73■□□□□ 0.11
VPS45-203ENST00000419023 CAPN15O75808 1086 aa15.66■□□□□ 0.1
VPS45-203ENST00000419023 CACNB1Q02641 598 aaPredicted RBP15.65■□□□□ 0.1
VPS45-203ENST00000419023 TRHP20396 242 aaPredicted RBP15.62■□□□□ 0.09
VPS45-203ENST00000419023 ZNF219Q9P2Y4 722 aaPredicted RBP15.57■□□□□ 0.08
VPS45-203ENST00000419023 ABCB7O75027 752 aa15.39■□□□□ 0.05
VPS45-203ENST00000419023 POLA2Q14181 598 aa15.37■□□□□ 0.05
VPS45-203ENST00000419023 DSG3P32926 999 aa15.36■□□□□ 0.05
VPS45-203ENST00000419023 FBLN2P98095 1184 aa15.07■□□□□ 0
VPS45-203ENST00000419023 MKRN4PQ13434 485 aaPredicted RBP15.07■□□□□ 0
VPS45-203ENST00000419023 ZBTB12Q9Y330 459 aaPredicted RBP15.07■□□□□ 0
VPS45-203ENST00000419023 FKBP8Q14318 412 aa14.88□□□□□ -0.03
VPS45-203ENST00000419023 OSCARQ8IYS5 282 aa14.84□□□□□ -0.03
VPS45-203ENST00000419023 SPDYE4A6NLX3 237 aa14.77□□□□□ -0.05
VPS45-203ENST00000419023 SPDYE2BA6NHP3 402 aa14.68□□□□□ -0.06
VPS45-203ENST00000419023 SPDYE6P0CI01 402 aa14.68□□□□□ -0.06
VPS45-203ENST00000419023 SPDYE2Q495Y8 402 aa14.68□□□□□ -0.06
VPS45-203ENST00000419023 ZNF692Q9BU19 519 aaPredicted RBP14.67□□□□□ -0.06
VPS45-203ENST00000419023 RBM42Q9BTD8 480 aaKnown RBP14.61□□□□□ -0.07
VPS45-203ENST00000419023 SSUH2Q9Y2M2 353 aa14.58□□□□□ -0.08
VPS45-203ENST00000419023 PROM2Q8N271 834 aa14.49□□□□□ -0.09
VPS45-203ENST00000419023 PABPN1Q86U42 306 aaKnown RBP eCLIP14.48□□□□□ -0.09
VPS45-203ENST00000419023 AKT1S1Q96B36 256 aa14.45□□□□□ -0.1
VPS45-203ENST00000419023 REM2Q8IYK8 340 aaPredicted RBP14.34□□□□□ -0.11
VPS45-203ENST00000419023 FBXO3Q9UK99 471 aa14.29□□□□□ -0.12
VPS45-203ENST00000419023 SPDYE1Q8NFV5 336 aaPredicted RBP14.25□□□□□ -0.13
VPS45-203ENST00000419023 CLEC11AQ9Y240 323 aa14.22□□□□□ -0.13
VPS45-203ENST00000419023 STAG3Q9UJ98 1225 aa14.21□□□□□ -0.13
VPS45-203ENST00000419023 PITPNM1O00562 1244 aa14.18□□□□□ -0.14
VPS45-203ENST00000419023 VASPP50552 380 aaPredicted RBP14.11□□□□□ -0.15
VPS45-203ENST00000419023 PRR29P0C7W0 189 aa14.08□□□□□ -0.16
VPS45-203ENST00000419023 MIER1Q8N108 512 aa14.01□□□□□ -0.17
VPS45-203ENST00000419023 CHRDL2Q6WN34 429 aa14□□□□□ -0.17
VPS45-203ENST00000419023 PLCD3Q8N3E9 789 aa14□□□□□ -0.17
VPS45-203ENST00000419023 IFNLR1Q8IU57 520 aaPredicted RBP13.93□□□□□ -0.18
VPS45-203ENST00000419023 CREBZFQ9NS37 354 aa13.92□□□□□ -0.18
VPS45-203ENST00000419023 PLEKHG5O94827 1062 aa13.91□□□□□ -0.18
VPS45-203ENST00000419023 KLHL34Q8N239 644 aa13.88□□□□□ -0.19
VPS45-203ENST00000419023 FXR2P51116 673 aaKnown RBP eCLIP13.87□□□□□ -0.19
VPS45-203ENST00000419023 CHADLQ6NUI6 762 aa13.86□□□□□ -0.19
VPS45-203ENST00000419023 PIP4P2Q8N4L2 257 aa13.84□□□□□ -0.19
VPS45-203ENST00000419023 PRKAR2AP13861 404 aaKnown RBP13.83□□□□□ -0.2
VPS45-203ENST00000419023 ZBTB47Q9UFB7 747 aaPredicted RBP13.79□□□□□ -0.2
VPS45-203ENST00000419023 MNX1P50219 401 aaPredicted RBP13.77□□□□□ -0.21
VPS45-203ENST00000419023 SPOCK2Q92563 424 aa13.75□□□□□ -0.21
VPS45-203ENST00000419023 FARP1Q9Y4F1 1045 aaPredicted RBP13.71□□□□□ -0.21
VPS45-203ENST00000419023 NPM1P06748 294 aaKnown RBP eCLIP13.67□□□□□ -0.22
VPS45-203ENST00000419023 RTN4Q9NQC3 1192 aaKnown RBP13.66□□□□□ -0.22
VPS45-203ENST00000419023 AMER1Q5JTC6 1135 aaPredicted RBP13.65□□□□□ -0.22
VPS45-203ENST00000419023 NUBP1P53384 320 aa13.63□□□□□ -0.23
VPS45-203ENST00000419023 RASEFQ8IZ41 740 aa13.57□□□□□ -0.24
VPS45-203ENST00000419023 CIZ1Q9ULV3 898 aaPredicted RBP13.55□□□□□ -0.24
VPS45-203ENST00000419023 DCAF8Q5TAQ9 597 aa13.53□□□□□ -0.24
VPS45-203ENST00000419023 FAM212AQ96EL1 285 aa13.51□□□□□ -0.25
VPS45-203ENST00000419023 PKD2Q13563 968 aa13.49□□□□□ -0.25
VPS45-203ENST00000419023 GSE1Q14687 1217 aa13.49□□□□□ -0.25
VPS45-203ENST00000419023 TSPYL2Q9H2G4 693 aaPredicted RBP13.49□□□□□ -0.25
VPS45-203ENST00000419023 POTEHQ6S545 545 aa13.47□□□□□ -0.25
VPS45-203ENST00000419023 CD44P16070 742 aaKnown RBP13.43□□□□□ -0.26
VPS45-203ENST00000419023 PAK3O75914 559 aaPredicted RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms