RNA–Protein interactions for RNA: ENST00000411993.1

HDAC9-205, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 626 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-205ENST00000411993 AEBP2Q6ZN18 517 aaPredicted RBP28.91■■■□□ 2.22
HDAC9-205ENST00000411993 CHIC1Q5VXU3 224 aa27.98■■■□□ 2.07
HDAC9-205ENST00000411993 SENP3Q9H4L4 574 aaPredicted RBP24.65■■□□□ 1.54
HDAC9-205ENST00000411993 PHF23Q9BUL5 403 aaPredicted RBP24.53■■□□□ 1.52
HDAC9-205ENST00000411993 FOXD1Q16676 465 aa22.87■■□□□ 1.25
HDAC9-205ENST00000411993 PLPPR3Q6T4P5 718 aa22.62■■□□□ 1.21
HDAC9-205ENST00000411993 ADRA2BP18089 450 aa21.75■■□□□ 1.07
HDAC9-205ENST00000411993 PPP6R1Q9UPN7 881 aa21.74■■□□□ 1.07
HDAC9-205ENST00000411993 PIAS4Q8N2W9 510 aaPredicted RBP21.56■■□□□ 1.04
HDAC9-205ENST00000411993 MSH5O43196 834 aa21.26■□□□□ 0.99
HDAC9-205ENST00000411993 POTEDQ86YR6 584 aa20.75■□□□□ 0.91
HDAC9-205ENST00000411993 SCAF1Q9H7N4 1312 aaKnown RBP19.96■□□□□ 0.79
HDAC9-205ENST00000411993 PPP4R3CPQ6ZMV5 832 aa19.88■□□□□ 0.77
HDAC9-205ENST00000411993 MAPK8IP2Q13387 824 aaPredicted RBP19.8■□□□□ 0.76
HDAC9-205ENST00000411993 DMRT2Q9Y5R5 561 aa19.6■□□□□ 0.73
HDAC9-205ENST00000411993 CNKSR2Q8WXI2 1034 aa19.4■□□□□ 0.7
HDAC9-205ENST00000411993 NCBP3Q53F19 620 aaKnown RBP19.32■□□□□ 0.68
HDAC9-205ENST00000411993 RNF216Q9NWF9 866 aaPredicted RBP19.08■□□□□ 0.64
HDAC9-205ENST00000411993 KCNA4P22459 653 aa19.07■□□□□ 0.64
HDAC9-205ENST00000411993 HOXD11P31277 338 aaPredicted RBP19.05■□□□□ 0.64
HDAC9-205ENST00000411993 NPM3O75607 178 aaKnown RBP18.98■□□□□ 0.63
HDAC9-205ENST00000411993 DCAF8L1A6NGE4 600 aa18.87■□□□□ 0.61
HDAC9-205ENST00000411993 DNAJC5BQ9UF47 199 aa18.41■□□□□ 0.54
HDAC9-205ENST00000411993 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.25■□□□□ 0.51
HDAC9-205ENST00000411993 SLC4A1APQ9BWU0 796 aaKnown RBP18.15■□□□□ 0.5
HDAC9-205ENST00000411993 RNF39Q9H2S5 420 aa18.15■□□□□ 0.5
HDAC9-205ENST00000411993 SLC4A2P04920 1241 aa17.96■□□□□ 0.47
HDAC9-205ENST00000411993 CACNB1Q02641 598 aaPredicted RBP17.96■□□□□ 0.47
HDAC9-205ENST00000411993 C1QBPQ07021 282 aaKnown RBP17.93■□□□□ 0.46
HDAC9-205ENST00000411993 U3KPZ7 1027 aaPredicted RBP17.86■□□□□ 0.45
HDAC9-205ENST00000411993 FOXD4L1Q9NU39 408 aa17.67■□□□□ 0.42
HDAC9-205ENST00000411993 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.59■□□□□ 0.41
HDAC9-205ENST00000411993 HNRNPUL2Q1KMD3 747 aaKnown RBP17.59■□□□□ 0.41
HDAC9-205ENST00000411993 MYCNP04198 464 aaPredicted RBP17.58■□□□□ 0.4
HDAC9-205ENST00000411993 ZBTB22O15209 634 aa17.51■□□□□ 0.39
HDAC9-205ENST00000411993 APLP2Q06481 763 aa17.5■□□□□ 0.39
HDAC9-205ENST00000411993 SAMD1Q6SPF0 538 aaPredicted RBP17.5■□□□□ 0.39
HDAC9-205ENST00000411993 CAPN15O75808 1086 aa17.46■□□□□ 0.39
HDAC9-205ENST00000411993 SPINK5Q9NQ38 1064 aaPredicted RBP17.45■□□□□ 0.38
HDAC9-205ENST00000411993 EHMT2Q96KQ7 1210 aa17.32■□□□□ 0.36
HDAC9-205ENST00000411993 TRHP20396 242 aaPredicted RBP17.3■□□□□ 0.36
HDAC9-205ENST00000411993 ZNF219Q9P2Y4 722 aaPredicted RBP17.28■□□□□ 0.36
HDAC9-205ENST00000411993 DSG3P32926 999 aa17.17■□□□□ 0.34
HDAC9-205ENST00000411993 CSRNP3Q8WYN3 585 aa17.17■□□□□ 0.34
HDAC9-205ENST00000411993 ABCB7O75027 752 aa17.09■□□□□ 0.33
HDAC9-205ENST00000411993 ATF5Q9Y2D1 282 aaPredicted RBP17.08■□□□□ 0.32
HDAC9-205ENST00000411993 ATXN8OSP0DMR3 200 aa17.06■□□□□ 0.32
HDAC9-205ENST00000411993 POLA2Q14181 598 aa16.91■□□□□ 0.3
HDAC9-205ENST00000411993 ZBTB12Q9Y330 459 aaPredicted RBP16.66■□□□□ 0.26
HDAC9-205ENST00000411993 FBLN2P98095 1184 aa16.48■□□□□ 0.23
HDAC9-205ENST00000411993 RBM42Q9BTD8 480 aaKnown RBP16.43■□□□□ 0.22
HDAC9-205ENST00000411993 OSCARQ8IYS5 282 aa16.37■□□□□ 0.21
HDAC9-205ENST00000411993 MKRN4PQ13434 485 aaPredicted RBP16.32■□□□□ 0.2
HDAC9-205ENST00000411993 POTEHQ6S545 545 aa16.19■□□□□ 0.18
HDAC9-205ENST00000411993 SPDYE2BA6NHP3 402 aa16.15■□□□□ 0.18
HDAC9-205ENST00000411993 SPDYE6P0CI01 402 aa16.15■□□□□ 0.18
HDAC9-205ENST00000411993 SPDYE2Q495Y8 402 aa16.15■□□□□ 0.18
HDAC9-205ENST00000411993 AKT1S1Q96B36 256 aa16.13■□□□□ 0.17
HDAC9-205ENST00000411993 ZNF692Q9BU19 519 aaPredicted RBP16.05■□□□□ 0.16
HDAC9-205ENST00000411993 REM2Q8IYK8 340 aaPredicted RBP15.97■□□□□ 0.15
HDAC9-205ENST00000411993 SSUH2Q9Y2M2 353 aa15.96■□□□□ 0.15
HDAC9-205ENST00000411993 SPDYE4A6NLX3 237 aa15.87■□□□□ 0.13
HDAC9-205ENST00000411993 CHRDL2Q6WN34 429 aa15.84■□□□□ 0.13
HDAC9-205ENST00000411993 PABPN1Q86U42 306 aaKnown RBP eCLIP15.83■□□□□ 0.12
HDAC9-205ENST00000411993 PITPNM1O00562 1244 aa15.8■□□□□ 0.12
HDAC9-205ENST00000411993 SPDYE1Q8NFV5 336 aaPredicted RBP15.77■□□□□ 0.12
HDAC9-205ENST00000411993 CLEC11AQ9Y240 323 aa15.73■□□□□ 0.11
HDAC9-205ENST00000411993 FKBP8Q14318 412 aa15.61■□□□□ 0.09
HDAC9-205ENST00000411993 PIP4P2Q8N4L2 257 aa15.56■□□□□ 0.08
HDAC9-205ENST00000411993 PRR29P0C7W0 189 aa15.53■□□□□ 0.08
HDAC9-205ENST00000411993 FXR2P51116 673 aaKnown RBP eCLIP15.53■□□□□ 0.08
HDAC9-205ENST00000411993 STAG3Q9UJ98 1225 aa15.52■□□□□ 0.08
HDAC9-205ENST00000411993 PROM2Q8N271 834 aa15.49■□□□□ 0.07
HDAC9-205ENST00000411993 PRKAR2AP13861 404 aaKnown RBP15.41■□□□□ 0.06
HDAC9-205ENST00000411993 CHADLQ6NUI6 762 aa15.34■□□□□ 0.05
HDAC9-205ENST00000411993 CREBZFQ9NS37 354 aa15.22■□□□□ 0.03
HDAC9-205ENST00000411993 HAX1O00165 279 aa15.18■□□□□ 0.02
HDAC9-205ENST00000411993 FARP1Q9Y4F1 1045 aaPredicted RBP15.16■□□□□ 0.02
HDAC9-205ENST00000411993 FBXO3Q9UK99 471 aa15.15■□□□□ 0.02
HDAC9-205ENST00000411993 PLEKHG5O94827 1062 aa15.1■□□□□ 0.01
HDAC9-205ENST00000411993 MIER1Q8N108 512 aa15.1■□□□□ 0.01
HDAC9-205ENST00000411993 PLCD3Q8N3E9 789 aa15.07■□□□□ 0
HDAC9-205ENST00000411993 C19orf67A6NJJ6 358 aa15.02■□□□□ -0
HDAC9-205ENST00000411993 NPM1P06748 294 aaKnown RBP eCLIP15.02■□□□□ -0
HDAC9-205ENST00000411993 MNX1P50219 401 aaPredicted RBP14.98□□□□□ -0.01
HDAC9-205ENST00000411993 CD44P16070 742 aaKnown RBP14.97□□□□□ -0.01
HDAC9-205ENST00000411993 EVX2Q03828 476 aa14.94□□□□□ -0.02
HDAC9-205ENST00000411993 SP7Q8TDD2 431 aaPredicted RBP14.94□□□□□ -0.02
HDAC9-205ENST00000411993 VASPP50552 380 aaPredicted RBP14.93□□□□□ -0.02
HDAC9-205ENST00000411993 ZBTB47Q9UFB7 747 aaPredicted RBP14.92□□□□□ -0.02
HDAC9-205ENST00000411993 PAK3O75914 559 aaPredicted RBP14.87□□□□□ -0.03
HDAC9-205ENST00000411993 ZRANB1Q9UGI0 708 aa14.84□□□□□ -0.03
HDAC9-205ENST00000411993 KLHL34Q8N239 644 aa14.8□□□□□ -0.04
HDAC9-205ENST00000411993 TSPYL2Q9H2G4 693 aaPredicted RBP14.75□□□□□ -0.05
HDAC9-205ENST00000411993 ZNF579Q8NAF0 562 aaKnown RBP14.73□□□□□ -0.05
HDAC9-205ENST00000411993 RASEFQ8IZ41 740 aa14.71□□□□□ -0.05
HDAC9-205ENST00000411993 NUBP1P53384 320 aa14.69□□□□□ -0.06
HDAC9-205ENST00000411993 GABBR2O75899 941 aa14.68□□□□□ -0.06
HDAC9-205ENST00000411993 IFNLR1Q8IU57 520 aaPredicted RBP14.66□□□□□ -0.06
HDAC9-205ENST00000411993 PHF12Q96QT6 1004 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms