RNA–Protein interactions for RNA: ENST00000397085.3

RAPGEF4-202, Transcript of Rap guanine nucleotide exchange factor 4, humanhuman

TSL 3

Gene RAPGEF4, Length 649 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF4-202ENST00000397085 AEBP2Q6ZN18 517 aaPredicted RBP30.37■■■□□ 2.45
RAPGEF4-202ENST00000397085 CHIC1Q5VXU3 224 aa28.81■■■□□ 2.2
RAPGEF4-202ENST00000397085 SENP3Q9H4L4 574 aaPredicted RBP26.09■■□□□ 1.77
RAPGEF4-202ENST00000397085 PHF23Q9BUL5 403 aaPredicted RBP25.68■■□□□ 1.7
RAPGEF4-202ENST00000397085 FOXD1Q16676 465 aa24.23■■□□□ 1.47
RAPGEF4-202ENST00000397085 PLPPR3Q6T4P5 718 aa23.05■■□□□ 1.28
RAPGEF4-202ENST00000397085 MSH5O43196 834 aa22.85■■□□□ 1.25
RAPGEF4-202ENST00000397085 PIAS4Q8N2W9 510 aaPredicted RBP22.71■■□□□ 1.23
RAPGEF4-202ENST00000397085 PPP6R1Q9UPN7 881 aa22.52■■□□□ 1.2
RAPGEF4-202ENST00000397085 ADRA2BP18089 450 aa22.5■■□□□ 1.19
RAPGEF4-202ENST00000397085 POTEDQ86YR6 584 aa22.4■■□□□ 1.18
RAPGEF4-202ENST00000397085 SCAF1Q9H7N4 1312 aaKnown RBP20.76■□□□□ 0.91
RAPGEF4-202ENST00000397085 MAPK8IP2Q13387 824 aaPredicted RBP20.67■□□□□ 0.9
RAPGEF4-202ENST00000397085 DMRT2Q9Y5R5 561 aa20.62■□□□□ 0.89
RAPGEF4-202ENST00000397085 PPP4R3CPQ6ZMV5 832 aa20.15■□□□□ 0.82
RAPGEF4-202ENST00000397085 DCAF8L1A6NGE4 600 aa19.91■□□□□ 0.78
RAPGEF4-202ENST00000397085 CNKSR2Q8WXI2 1034 aa19.83■□□□□ 0.77
RAPGEF4-202ENST00000397085 HOXD11P31277 338 aaPredicted RBP19.79■□□□□ 0.76
RAPGEF4-202ENST00000397085 CACNB1Q02641 598 aaPredicted RBP19.7■□□□□ 0.74
RAPGEF4-202ENST00000397085 RNF216Q9NWF9 866 aaPredicted RBP19.66■□□□□ 0.74
RAPGEF4-202ENST00000397085 NCBP3Q53F19 620 aaKnown RBP19.46■□□□□ 0.71
RAPGEF4-202ENST00000397085 RNF39Q9H2S5 420 aa19.39■□□□□ 0.69
RAPGEF4-202ENST00000397085 C1QBPQ07021 282 aaKnown RBP19.18■□□□□ 0.66
RAPGEF4-202ENST00000397085 DNAJC5BQ9UF47 199 aa19.16■□□□□ 0.66
RAPGEF4-202ENST00000397085 NPM3O75607 178 aaKnown RBP19.03■□□□□ 0.64
RAPGEF4-202ENST00000397085 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.99■□□□□ 0.63
RAPGEF4-202ENST00000397085 KCNA4P22459 653 aa18.54■□□□□ 0.56
RAPGEF4-202ENST00000397085 U3KPZ7 1027 aaPredicted RBP18.44■□□□□ 0.54
RAPGEF4-202ENST00000397085 CAPN15O75808 1086 aa18.31■□□□□ 0.52
RAPGEF4-202ENST00000397085 SPINK5Q9NQ38 1064 aaPredicted RBP18.22■□□□□ 0.51
RAPGEF4-202ENST00000397085 SLC4A2P04920 1241 aa18.14■□□□□ 0.49
RAPGEF4-202ENST00000397085 APLP2Q06481 763 aa18.14■□□□□ 0.49
RAPGEF4-202ENST00000397085 DSG3P32926 999 aa18.12■□□□□ 0.49
RAPGEF4-202ENST00000397085 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.05■□□□□ 0.48
RAPGEF4-202ENST00000397085 HNRNPUL2Q1KMD3 747 aaKnown RBP18.05■□□□□ 0.48
RAPGEF4-202ENST00000397085 TRHP20396 242 aaPredicted RBP17.99■□□□□ 0.47
RAPGEF4-202ENST00000397085 ZNF219Q9P2Y4 722 aaPredicted RBP17.96■□□□□ 0.47
RAPGEF4-202ENST00000397085 SAMD1Q6SPF0 538 aaPredicted RBP17.9■□□□□ 0.46
RAPGEF4-202ENST00000397085 ABCB7O75027 752 aa17.82■□□□□ 0.44
RAPGEF4-202ENST00000397085 MYCNP04198 464 aaPredicted RBP17.68■□□□□ 0.42
RAPGEF4-202ENST00000397085 POTEHQ6S545 545 aa17.58■□□□□ 0.4
RAPGEF4-202ENST00000397085 SLC4A1APQ9BWU0 796 aaKnown RBP17.57■□□□□ 0.4
RAPGEF4-202ENST00000397085 POLA2Q14181 598 aa17.43■□□□□ 0.38
RAPGEF4-202ENST00000397085 RBM42Q9BTD8 480 aaKnown RBP17.43■□□□□ 0.38
RAPGEF4-202ENST00000397085 FOXD4L1Q9NU39 408 aa17.41■□□□□ 0.38
RAPGEF4-202ENST00000397085 ZBTB12Q9Y330 459 aaPredicted RBP17.16■□□□□ 0.34
RAPGEF4-202ENST00000397085 ATF5Q9Y2D1 282 aaPredicted RBP17.15■□□□□ 0.34
RAPGEF4-202ENST00000397085 CHRDL2Q6WN34 429 aa17.02■□□□□ 0.32
RAPGEF4-202ENST00000397085 ZBTB22O15209 634 aa16.97■□□□□ 0.31
RAPGEF4-202ENST00000397085 AKT1S1Q96B36 256 aa16.95■□□□□ 0.3
RAPGEF4-202ENST00000397085 ATXN8OSP0DMR3 200 aa16.9■□□□□ 0.3
RAPGEF4-202ENST00000397085 OSCARQ8IYS5 282 aa16.86■□□□□ 0.29
RAPGEF4-202ENST00000397085 REM2Q8IYK8 340 aaPredicted RBP16.75■□□□□ 0.27
RAPGEF4-202ENST00000397085 FBLN2P98095 1184 aa16.7■□□□□ 0.26
RAPGEF4-202ENST00000397085 PITPNM1O00562 1244 aa16.56■□□□□ 0.24
RAPGEF4-202ENST00000397085 SPDYE2BA6NHP3 402 aa16.55■□□□□ 0.24
RAPGEF4-202ENST00000397085 SPDYE6P0CI01 402 aa16.55■□□□□ 0.24
RAPGEF4-202ENST00000397085 SPDYE2Q495Y8 402 aa16.55■□□□□ 0.24
RAPGEF4-202ENST00000397085 PIP4P2Q8N4L2 257 aa16.55■□□□□ 0.24
RAPGEF4-202ENST00000397085 FXR2P51116 673 aaKnown RBP eCLIP16.43■□□□□ 0.22
RAPGEF4-202ENST00000397085 SP7Q8TDD2 431 aaPredicted RBP16.43■□□□□ 0.22
RAPGEF4-202ENST00000397085 HAX1O00165 279 aa16.38■□□□□ 0.21
RAPGEF4-202ENST00000397085 ZNF692Q9BU19 519 aaPredicted RBP16.36■□□□□ 0.21
RAPGEF4-202ENST00000397085 MKRN4PQ13434 485 aaPredicted RBP16.35■□□□□ 0.21
RAPGEF4-202ENST00000397085 SPDYE1Q8NFV5 336 aaPredicted RBP16.33■□□□□ 0.2
RAPGEF4-202ENST00000397085 CLEC11AQ9Y240 323 aa16.32■□□□□ 0.2
RAPGEF4-202ENST00000397085 SSUH2Q9Y2M2 353 aa16.25■□□□□ 0.19
RAPGEF4-202ENST00000397085 PRKAR2AP13861 404 aaKnown RBP16.18■□□□□ 0.18
RAPGEF4-202ENST00000397085 CSRNP3Q8WYN3 585 aa16.13■□□□□ 0.17
RAPGEF4-202ENST00000397085 PABPN1Q86U42 306 aaKnown RBP eCLIP16.09■□□□□ 0.17
RAPGEF4-202ENST00000397085 PRR29P0C7W0 189 aa16.03■□□□□ 0.16
RAPGEF4-202ENST00000397085 EVX2Q03828 476 aa15.99■□□□□ 0.15
RAPGEF4-202ENST00000397085 EHMT2Q96KQ7 1210 aa15.96■□□□□ 0.15
RAPGEF4-202ENST00000397085 CHADLQ6NUI6 762 aa15.93■□□□□ 0.14
RAPGEF4-202ENST00000397085 C19orf67A6NJJ6 358 aa15.91■□□□□ 0.14
RAPGEF4-202ENST00000397085 GABBR2O75899 941 aa15.72■□□□□ 0.11
RAPGEF4-202ENST00000397085 FARP1Q9Y4F1 1045 aaPredicted RBP15.71■□□□□ 0.11
RAPGEF4-202ENST00000397085 STAG3Q9UJ98 1225 aa15.7■□□□□ 0.1
RAPGEF4-202ENST00000397085 CD44P16070 742 aaKnown RBP15.67■□□□□ 0.1
RAPGEF4-202ENST00000397085 SPDYE4A6NLX3 237 aa15.65■□□□□ 0.1
RAPGEF4-202ENST00000397085 CLCN6P51797 869 aa15.54■□□□□ 0.08
RAPGEF4-202ENST00000397085 CREBZFQ9NS37 354 aa15.5■□□□□ 0.07
RAPGEF4-202ENST00000397085 ZRANB1Q9UGI0 708 aa15.44■□□□□ 0.06
RAPGEF4-202ENST00000397085 LHX8Q68G74 356 aa15.43■□□□□ 0.06
RAPGEF4-202ENST00000397085 PAK3O75914 559 aaPredicted RBP15.4■□□□□ 0.06
RAPGEF4-202ENST00000397085 DCBLD2Q96PD2 775 aa15.39■□□□□ 0.05
RAPGEF4-202ENST00000397085 ZNF579Q8NAF0 562 aaKnown RBP15.38■□□□□ 0.05
RAPGEF4-202ENST00000397085 NPM1P06748 294 aaKnown RBP eCLIP15.35■□□□□ 0.05
RAPGEF4-202ENST00000397085 POTEIP0CG38 1075 aa15.3■□□□□ 0.04
RAPGEF4-202ENST00000397085 GALR2O43603 387 aaPredicted RBP15.18■□□□□ 0.02
RAPGEF4-202ENST00000397085 PHF12Q96QT6 1004 aa15.16■□□□□ 0.02
RAPGEF4-202ENST00000397085 MNX1P50219 401 aaPredicted RBP15.15■□□□□ 0.02
RAPGEF4-202ENST00000397085 PROM2Q8N271 834 aa15.12■□□□□ 0.01
RAPGEF4-202ENST00000397085 PLEKHG5O94827 1062 aa15.11■□□□□ 0.01
RAPGEF4-202ENST00000397085 TSPYL2Q9H2G4 693 aaPredicted RBP15.02■□□□□ -0
RAPGEF4-202ENST00000397085 MIER1Q8N108 512 aa15□□□□□ -0.01
RAPGEF4-202ENST00000397085 MS4A3Q96HJ5 214 aa14.95□□□□□ -0.02
RAPGEF4-202ENST00000397085 PLCD3Q8N3E9 789 aa14.88□□□□□ -0.03
RAPGEF4-202ENST00000397085 ASTLQ6HA08 431 aaPredicted RBP14.86□□□□□ -0.03
RAPGEF4-202ENST00000397085 CCDC61Q9Y6R9 512 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms