RNA–Protein interactions for RNA: ENST00000368287.1

ECHDC1-201, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2

Gene ECHDC1, Length 509 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-201ENST00000368287 AEBP2Q6ZN18 517 aaPredicted RBP27.1■■□□□ 1.93
ECHDC1-201ENST00000368287 CHIC1Q5VXU3 224 aa25.41■■□□□ 1.66
ECHDC1-201ENST00000368287 SENP3Q9H4L4 574 aaPredicted RBP23.23■■□□□ 1.31
ECHDC1-201ENST00000368287 PHF23Q9BUL5 403 aaPredicted RBP22.85■■□□□ 1.25
ECHDC1-201ENST00000368287 FOXD1Q16676 465 aa21.66■■□□□ 1.06
ECHDC1-201ENST00000368287 POTEDQ86YR6 584 aa20.55■□□□□ 0.88
ECHDC1-201ENST00000368287 MSH5O43196 834 aa20.45■□□□□ 0.86
ECHDC1-201ENST00000368287 PIAS4Q8N2W9 510 aaPredicted RBP20.2■□□□□ 0.82
ECHDC1-201ENST00000368287 PLPPR3Q6T4P5 718 aa20.16■□□□□ 0.82
ECHDC1-201ENST00000368287 PPP6R1Q9UPN7 881 aa19.95■□□□□ 0.78
ECHDC1-201ENST00000368287 ADRA2BP18089 450 aa19.89■□□□□ 0.77
ECHDC1-201ENST00000368287 MAPK8IP2Q13387 824 aaPredicted RBP18.37■□□□□ 0.53
ECHDC1-201ENST00000368287 DMRT2Q9Y5R5 561 aa18.34■□□□□ 0.53
ECHDC1-201ENST00000368287 SCAF1Q9H7N4 1312 aaKnown RBP18.24■□□□□ 0.51
ECHDC1-201ENST00000368287 CACNB1Q02641 598 aaPredicted RBP17.79■□□□□ 0.44
ECHDC1-201ENST00000368287 DCAF8L1A6NGE4 600 aa17.68■□□□□ 0.42
ECHDC1-201ENST00000368287 PPP4R3CPQ6ZMV5 832 aa17.62■□□□□ 0.41
ECHDC1-201ENST00000368287 HOXD11P31277 338 aaPredicted RBP17.51■□□□□ 0.39
ECHDC1-201ENST00000368287 RNF39Q9H2S5 420 aa17.39■□□□□ 0.37
ECHDC1-201ENST00000368287 CNKSR2Q8WXI2 1034 aa17.38■□□□□ 0.37
ECHDC1-201ENST00000368287 RNF216Q9NWF9 866 aaPredicted RBP17.3■□□□□ 0.36
ECHDC1-201ENST00000368287 C1QBPQ07021 282 aaKnown RBP17.13■□□□□ 0.33
ECHDC1-201ENST00000368287 DNAJC5BQ9UF47 199 aa16.97■□□□□ 0.31
ECHDC1-201ENST00000368287 NCBP3Q53F19 620 aaKnown RBP16.86■□□□□ 0.29
ECHDC1-201ENST00000368287 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.75■□□□□ 0.278e-8■■■□□ 16.3
ECHDC1-201ENST00000368287 NPM3O75607 178 aaKnown RBP16.58■□□□□ 0.24
ECHDC1-201ENST00000368287 U3KPZ7 1027 aaPredicted RBP16.3■□□□□ 0.2
ECHDC1-201ENST00000368287 CAPN15O75808 1086 aa16.22■□□□□ 0.19
ECHDC1-201ENST00000368287 SPINK5Q9NQ38 1064 aaPredicted RBP16.18■□□□□ 0.18
ECHDC1-201ENST00000368287 DSG3P32926 999 aa16.16■□□□□ 0.18
ECHDC1-201ENST00000368287 POTEHQ6S545 545 aa16.06■□□□□ 0.16
ECHDC1-201ENST00000368287 KCNA4P22459 653 aa15.94■□□□□ 0.14
ECHDC1-201ENST00000368287 SLC4A2P04920 1241 aa15.9■□□□□ 0.14
ECHDC1-201ENST00000368287 APLP2Q06481 763 aa15.88■□□□□ 0.13
ECHDC1-201ENST00000368287 TRHP20396 242 aaPredicted RBP15.87■□□□□ 0.13
ECHDC1-201ENST00000368287 ZNF219Q9P2Y4 722 aaPredicted RBP15.82■□□□□ 0.12
ECHDC1-201ENST00000368287 ABCB7O75027 752 aa15.81■□□□□ 0.12
ECHDC1-201ENST00000368287 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.76■□□□□ 0.11
ECHDC1-201ENST00000368287 HNRNPUL2Q1KMD3 747 aaKnown RBP15.76■□□□□ 0.11
ECHDC1-201ENST00000368287 SAMD1Q6SPF0 538 aaPredicted RBP15.65■□□□□ 0.1
ECHDC1-201ENST00000368287 RBM42Q9BTD8 480 aaKnown RBP15.48■□□□□ 0.07
ECHDC1-201ENST00000368287 MYCNP04198 464 aaPredicted RBP15.37■□□□□ 0.05
ECHDC1-201ENST00000368287 POLA2Q14181 598 aa15.33■□□□□ 0.04
ECHDC1-201ENST00000368287 CHRDL2Q6WN34 429 aa15.26■□□□□ 0.03
ECHDC1-201ENST00000368287 ZBTB12Q9Y330 459 aaPredicted RBP15.03■□□□□ -0
ECHDC1-201ENST00000368287 AKT1S1Q96B36 256 aa15.02■□□□□ -0
ECHDC1-201ENST00000368287 FOXD4L1Q9NU39 408 aa15.01□□□□□ -0.01
ECHDC1-201ENST00000368287 SLC4A1APQ9BWU0 796 aaKnown RBP15□□□□□ -0.01
ECHDC1-201ENST00000368287 ATF5Q9Y2D1 282 aaPredicted RBP15□□□□□ -0.01
ECHDC1-201ENST00000368287 SP7Q8TDD2 431 aaPredicted RBP14.88□□□□□ -0.03
ECHDC1-201ENST00000368287 REM2Q8IYK8 340 aaPredicted RBP14.87□□□□□ -0.03
ECHDC1-201ENST00000368287 OSCARQ8IYS5 282 aa14.87□□□□□ -0.03
ECHDC1-201ENST00000368287 PIP4P2Q8N4L2 257 aa14.81□□□□□ -0.04
ECHDC1-201ENST00000368287 PITPNM1O00562 1244 aa14.72□□□□□ -0.05
ECHDC1-201ENST00000368287 HAX1O00165 279 aa14.67□□□□□ -0.06
ECHDC1-201ENST00000368287 FXR2P51116 673 aaKnown RBP eCLIP14.64□□□□□ -0.07
ECHDC1-201ENST00000368287 ZBTB22O15209 634 aa14.62□□□□□ -0.07
ECHDC1-201ENST00000368287 ATXN8OSP0DMR3 200 aa14.57□□□□□ -0.08
ECHDC1-201ENST00000368287 SPDYE2BA6NHP3 402 aa14.51□□□□□ -0.09
ECHDC1-201ENST00000368287 SPDYE6P0CI01 402 aa14.51□□□□□ -0.09
ECHDC1-201ENST00000368287 FBLN2P98095 1184 aa14.51□□□□□ -0.09
ECHDC1-201ENST00000368287 SPDYE2Q495Y8 402 aa14.51□□□□□ -0.09
ECHDC1-201ENST00000368287 EVX2Q03828 476 aa14.39□□□□□ -0.11
ECHDC1-201ENST00000368287 CLEC11AQ9Y240 323 aa14.37□□□□□ -0.11
ECHDC1-201ENST00000368287 SPDYE1Q8NFV5 336 aaPredicted RBP14.36□□□□□ -0.11
ECHDC1-201ENST00000368287 PRKAR2AP13861 404 aaKnown RBP14.35□□□□□ -0.11
ECHDC1-201ENST00000368287 MKRN4PQ13434 485 aaPredicted RBP14.29□□□□□ -0.12
ECHDC1-201ENST00000368287 ZNF692Q9BU19 519 aaPredicted RBP14.29□□□□□ -0.12
ECHDC1-201ENST00000368287 SSUH2Q9Y2M2 353 aa14.25□□□□□ -0.13
ECHDC1-201ENST00000368287 C19orf67A6NJJ6 358 aa14.2□□□□□ -0.14
ECHDC1-201ENST00000368287 CHADLQ6NUI6 762 aa14.11□□□□□ -0.15
ECHDC1-201ENST00000368287 GABBR2O75899 941 aa14.09□□□□□ -0.15
ECHDC1-201ENST00000368287 PRR29P0C7W0 189 aa14.07□□□□□ -0.16
ECHDC1-201ENST00000368287 PABPN1Q86U42 306 aaKnown RBP eCLIP14.06□□□□□ -0.16
ECHDC1-201ENST00000368287 LHX8Q68G74 356 aa13.95□□□□□ -0.18
ECHDC1-201ENST00000368287 CD44P16070 742 aaKnown RBP13.88□□□□□ -0.19
ECHDC1-201ENST00000368287 FARP1Q9Y4F1 1045 aaPredicted RBP13.86□□□□□ -0.19
ECHDC1-201ENST00000368287 POTEIP0CG38 1075 aa13.75□□□□□ -0.21
ECHDC1-201ENST00000368287 CLCN6P51797 869 aa13.75□□□□□ -0.21
ECHDC1-201ENST00000368287 DCBLD2Q96PD2 775 aa13.68□□□□□ -0.22
ECHDC1-201ENST00000368287 ZNF579Q8NAF0 562 aaKnown RBP13.63□□□□□ -0.23
ECHDC1-201ENST00000368287 ZRANB1Q9UGI0 708 aa13.63□□□□□ -0.23
ECHDC1-201ENST00000368287 CSRNP3Q8WYN3 585 aa13.62□□□□□ -0.23
ECHDC1-201ENST00000368287 STAG3Q9UJ98 1225 aa13.61□□□□□ -0.23
ECHDC1-201ENST00000368287 CREBZFQ9NS37 354 aa13.6□□□□□ -0.23
ECHDC1-201ENST00000368287 GALR2O43603 387 aaPredicted RBP13.49□□□□□ -0.25
ECHDC1-201ENST00000368287 PAK3O75914 559 aaPredicted RBP13.48□□□□□ -0.25
ECHDC1-201ENST00000368287 SPDYE4A6NLX3 237 aa13.47□□□□□ -0.25
ECHDC1-201ENST00000368287 PHF12Q96QT6 1004 aa13.4□□□□□ -0.26
ECHDC1-201ENST00000368287 PLSCR2Q9NRY7 297 aa13.4□□□□□ -0.26
ECHDC1-201ENST00000368287 NPM1P06748 294 aaKnown RBP eCLIP13.38□□□□□ -0.27
ECHDC1-201ENST00000368287 OTUD5Q96G74 571 aa13.33□□□□□ -0.28
ECHDC1-201ENST00000368287 EHMT2Q96KQ7 1210 aa13.31□□□□□ -0.28
ECHDC1-201ENST00000368287 POTEB2H3BUK9 544 aa13.29□□□□□ -0.28
ECHDC1-201ENST00000368287 MNX1P50219 401 aaPredicted RBP13.29□□□□□ -0.28
ECHDC1-201ENST00000368287 PELP1Q8IZL8 1130 aaKnown RBP13.23□□□□□ -0.29
ECHDC1-201ENST00000368287 MS4A3Q96HJ5 214 aa13.21□□□□□ -0.29
ECHDC1-201ENST00000368287 METRNQ9UJH8 293 aa13.18□□□□□ -0.3
ECHDC1-201ENST00000368287 ASTLQ6HA08 431 aaPredicted RBP13.17□□□□□ -0.3
ECHDC1-201ENST00000368287 POTEMA6NI47 508 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms