RNA–Protein interactions for RNA: ENST00000279052.10

ERGIC3-201, Transcript of ERGIC and golgi 3, humanhuman

TSL 2

Gene ERGIC3, Length 2,846 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERGIC3-201ENST00000279052 PELP1Q8IZL8 1130 aaKnown RBP19.44■□□□□ 0.7
ERGIC3-201ENST00000279052 MYT1Q01538 1121 aa19.2■□□□□ 0.66
ERGIC3-201ENST00000279052 NISCHQ9Y2I1 1504 aa18.68■□□□□ 0.58
ERGIC3-201ENST00000279052 TTBK1Q5TCY1 1321 aaPredicted RBP18.5■□□□□ 0.55
ERGIC3-201ENST00000279052 PRKCSHP14314 528 aaPredicted RBP17.91■□□□□ 0.46
ERGIC3-201ENST00000279052 HRCP23327 699 aa17.81■□□□□ 0.44
ERGIC3-201ENST00000279052 ERICH6Q7L0X2 663 aa17.67■□□□□ 0.42
ERGIC3-201ENST00000279052 APLP2Q06481 763 aa17.55■□□□□ 0.4
ERGIC3-201ENST00000279052 SCAF1Q9H7N4 1312 aaKnown RBP17.52■□□□□ 0.4
ERGIC3-201ENST00000279052 SLC24A1O60721 1099 aa17.48■□□□□ 0.39
ERGIC3-201ENST00000279052 BCL11AQ9H165 835 aa17.48■□□□□ 0.39
ERGIC3-201ENST00000279052 FAM9AQ8IZU1 332 aaPredicted RBP17.22■□□□□ 0.35
ERGIC3-201ENST00000279052 PPARGC1BQ86YN6 1023 aaKnown RBP17.16■□□□□ 0.34
ERGIC3-201ENST00000279052 CENPBP07199 599 aaPredicted RBP17.01■□□□□ 0.31
ERGIC3-201ENST00000279052 DAXXQ9UER7 740 aaPredicted RBP16.82■□□□□ 0.28
ERGIC3-201ENST00000279052 ACIN1Q9UKV3 1341 aaKnown RBP16.76■□□□□ 0.27
ERGIC3-201ENST00000279052 PCGF6Q9BYE7 350 aa16.65■□□□□ 0.26
ERGIC3-201ENST00000279052 GTF3C3Q9Y5Q9 886 aa16.62■□□□□ 0.25
ERGIC3-201ENST00000279052 ANP32EQ9BTT0 268 aa16.61■□□□□ 0.25
ERGIC3-201ENST00000279052 EIF5BO60841 1220 aaKnown RBP16.55■□□□□ 0.24
ERGIC3-201ENST00000279052 NEUROD1Q13562 356 aa16.55■□□□□ 0.24
ERGIC3-201ENST00000279052 ZEB1P37275 1124 aaPredicted RBP16.47■□□□□ 0.23
ERGIC3-201ENST00000279052 CSRNP3Q8WYN3 585 aa16.37■□□□□ 0.21
ERGIC3-201ENST00000279052 UBE2Q2Q8WVN8 375 aa16.27■□□□□ 0.19
ERGIC3-201ENST00000279052 ANO8Q9HCE9 1232 aaPredicted RBP16.15■□□□□ 0.18
ERGIC3-201ENST00000279052 SHROOM4Q9ULL8 1493 aa16.11■□□□□ 0.17
ERGIC3-201ENST00000279052 PLEKHG5O94827 1062 aa16.09■□□□□ 0.17
ERGIC3-201ENST00000279052 MYO15BQ96JP2 1530 aa16.07■□□□□ 0.16
ERGIC3-201ENST00000279052 CCDC180Q9P1Z9 1646 aa15.97■□□□□ 0.15
ERGIC3-201ENST00000279052 PODXL2Q9NZ53 605 aa15.95■□□□□ 0.14
ERGIC3-201ENST00000279052 DCAF1Q9Y4B6 1507 aa15.93■□□□□ 0.14
ERGIC3-201ENST00000279052 TRIM26Q12899 539 aaPredicted RBP15.9■□□□□ 0.14
ERGIC3-201ENST00000279052 SUPT5HO00267 1087 aaKnown RBP15.9■□□□□ 0.14
ERGIC3-201ENST00000279052 PKNOX2Q96KN3 472 aa15.89■□□□□ 0.13
ERGIC3-201ENST00000279052 TSHZ2Q9NRE2 1034 aa15.83■□□□□ 0.12
ERGIC3-201ENST00000279052 ZCCHC6Q5VYS8 1495 aaKnown RBP15.81■□□□□ 0.12
ERGIC3-201ENST00000279052 ERICH6BQ5W0A0 696 aa15.79■□□□□ 0.12
ERGIC3-201ENST00000279052 SALL2Q9Y467 1007 aaPredicted RBP15.79■□□□□ 0.12
ERGIC3-201ENST00000279052 MYT1LQ9UL68 1186 aa15.72■□□□□ 0.11
ERGIC3-201ENST00000279052 CLSPNQ9HAW4 1339 aa15.71■□□□□ 0.11
ERGIC3-201ENST00000279052 DIEXFQ68CQ4 756 aaKnown RBP15.71■□□□□ 0.1
ERGIC3-201ENST00000279052 CCDC136Q96JN2 1154 aa15.69■□□□□ 0.1
ERGIC3-201ENST00000279052 DCAF8L2P0C7V8 631 aa15.61■□□□□ 0.09
ERGIC3-201ENST00000279052 SUPT16HQ9Y5B9 1047 aaKnown RBP15.53■□□□□ 0.08
ERGIC3-201ENST00000279052 NEFLP07196 543 aa15.52■□□□□ 0.07
ERGIC3-201ENST00000279052 DEKP35659 375 aaKnown RBP15.49■□□□□ 0.07
ERGIC3-201ENST00000279052 YTHDC1Q96MU7 727 aaKnown RBP15.48■□□□□ 0.07
ERGIC3-201ENST00000279052 CHIC1Q5VXU3 224 aa15.47■□□□□ 0.07
ERGIC3-201ENST00000279052 NCBP3Q53F19 620 aaKnown RBP15.44■□□□□ 0.06
ERGIC3-201ENST00000279052 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.42■□□□□ 0.06
ERGIC3-201ENST00000279052 RANGAP1P46060 587 aaPredicted RBP15.37■□□□□ 0.05
ERGIC3-201ENST00000279052 PDE4CQ08493 712 aa15.35■□□□□ 0.05
ERGIC3-201ENST00000279052 PDIA4P13667 645 aaKnown RBP15.34■□□□□ 0.05
ERGIC3-201ENST00000279052 RBM19Q9Y4C8 960 aaKnown RBP15.33■□□□□ 0.04
ERGIC3-201ENST00000279052 TRIM41Q8WV44 630 aa15.31■□□□□ 0.04
ERGIC3-201ENST00000279052 MSH5O43196 834 aa15.28■□□□□ 0.04
ERGIC3-201ENST00000279052 KLHL34Q8N239 644 aa15.27■□□□□ 0.04
ERGIC3-201ENST00000279052 GLIPR1L2Q4G1C9 344 aa15.27■□□□□ 0.03
ERGIC3-201ENST00000279052 ARXQ96QS3 562 aa15.27■□□□□ 0.03
ERGIC3-201ENST00000279052 AEBP2Q6ZN18 517 aaPredicted RBP15.25■□□□□ 0.03
ERGIC3-201ENST00000279052 FGD1P98174 961 aa15.21■□□□□ 0.03
ERGIC3-201ENST00000279052 FANCIQ9NVI1 1328 aa15.17■□□□□ 0.02
ERGIC3-201ENST00000279052 ZMYND15Q9H091 742 aa15.17■□□□□ 0.02
ERGIC3-201ENST00000279052 IL27Q8NEV9 243 aa15.14■□□□□ 0.01
ERGIC3-201ENST00000279052 ZNF316A6NFI3 1004 aaPredicted RBP15.11■□□□□ 0.01
ERGIC3-201ENST00000279052 MIER1Q8N108 512 aa15.11■□□□□ 0.01
ERGIC3-201ENST00000279052 RTN4Q9NQC3 1192 aaKnown RBP15.1■□□□□ 0.01
ERGIC3-201ENST00000279052 A0A0U1RQG5 324 aaPredicted RBP15.09■□□□□ 0.01
ERGIC3-201ENST00000279052 AAMPQ13685 434 aa15.09■□□□□ 0.01
ERGIC3-201ENST00000279052 BCL11BQ9C0K0 894 aaPredicted RBP15.08■□□□□ 0
ERGIC3-201ENST00000279052 VSIG10Q8N0Z9 540 aa15.04■□□□□ -0
ERGIC3-201ENST00000279052 CCER1Q8TC90 406 aaPredicted RBP15.04■□□□□ -0
ERGIC3-201ENST00000279052 LOC105371045A0A1W2PR82 267 aa15.03■□□□□ -0
ERGIC3-201ENST00000279052 TAF7LQ5H9L4 462 aa15.02■□□□□ -0
ERGIC3-201ENST00000279052 RBM10P98175 930 aaKnown RBP15.02□□□□□ -0.01
ERGIC3-201ENST00000279052 RSPH6AQ9H0K4 717 aa14.95□□□□□ -0.02
ERGIC3-201ENST00000279052 ABCC9O60706 1549 aa14.94□□□□□ -0.02
ERGIC3-201ENST00000279052 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.93□□□□□ -0.02
ERGIC3-201ENST00000279052 TIMELESSQ9UNS1 1208 aa14.92□□□□□ -0.02
ERGIC3-201ENST00000279052 BCANQ96GW7 911 aa14.88□□□□□ -0.03
ERGIC3-201ENST00000279052 SCRIBQ14160 1630 aa14.87□□□□□ -0.03
ERGIC3-201ENST00000279052 RSF1Q96T23 1441 aaPredicted RBP14.85□□□□□ -0.03
ERGIC3-201ENST00000279052 RTL5Q5HYW3 569 aaPredicted RBP14.84□□□□□ -0.03
ERGIC3-201ENST00000279052 C11orf95C9JLR9 678 aaPredicted RBP14.83□□□□□ -0.04
ERGIC3-201ENST00000279052 NBR1Q14596 966 aa14.83□□□□□ -0.04
ERGIC3-201ENST00000279052 FKBP8Q14318 412 aa14.79□□□□□ -0.04
ERGIC3-201ENST00000279052 NOP58Q9Y2X3 529 aaKnown RBP14.75□□□□□ -0.05
ERGIC3-201ENST00000279052 ZNF326Q5BKZ1 582 aaKnown RBP14.71□□□□□ -0.05
ERGIC3-201ENST00000279052 HOMEZQ8IX15 550 aa14.71□□□□□ -0.05
ERGIC3-201ENST00000279052 RB1CC1Q8TDY2 1594 aa14.7□□□□□ -0.06
ERGIC3-201ENST00000279052 CDK11AQ9UQ88 783 aaPredicted RBP14.69□□□□□ -0.06
ERGIC3-201ENST00000279052 RSPH4AQ5TD94 716 aa14.68□□□□□ -0.06
ERGIC3-201ENST00000279052 BRD2P25440 801 aaKnown RBP14.66□□□□□ -0.06
ERGIC3-201ENST00000279052 PLPPR3Q6T4P5 718 aa14.66□□□□□ -0.06
ERGIC3-201ENST00000279052 PAXIP1Q6ZW49 1069 aaPredicted RBP14.66□□□□□ -0.06
ERGIC3-201ENST00000279052 WASHC2CQ9Y4E1 1318 aa14.64□□□□□ -0.07
ERGIC3-201ENST00000279052 ITGAEP38570 1179 aa14.64□□□□□ -0.07
ERGIC3-201ENST00000279052 RRP9O43818 475 aaKnown RBP14.63□□□□□ -0.07
ERGIC3-201ENST00000279052 WASHC2AQ641Q2 1341 aa14.61□□□□□ -0.07
ERGIC3-201ENST00000279052 NAP1L5Q96NT1 182 aaPredicted RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms