RNA–Protein interactions for RNA: ENST00000259043.11

TRA2B-201, Transcript of transformer 2 beta homolog, humanhuman

TSL 3

Gene TRA2B, Length 943 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-201ENST00000259043 AEBP2Q6ZN18 517 aaPredicted RBP33.21■■■□□ 2.91
TRA2B-201ENST00000259043 CHIC1Q5VXU3 224 aa31.43■■■□□ 2.62
TRA2B-201ENST00000259043 SENP3Q9H4L4 574 aaPredicted RBP28.4■■■□□ 2.14
TRA2B-201ENST00000259043 PHF23Q9BUL5 403 aaPredicted RBP27.99■■■□□ 2.07
TRA2B-201ENST00000259043 FOXD1Q16676 465 aa26.45■■□□□ 1.82
TRA2B-201ENST00000259043 PLPPR3Q6T4P5 718 aa25.08■■□□□ 1.61
TRA2B-201ENST00000259043 MSH5O43196 834 aa24.85■■□□□ 1.57
TRA2B-201ENST00000259043 PIAS4Q8N2W9 510 aaPredicted RBP24.7■■□□□ 1.54
TRA2B-201ENST00000259043 PPP6R1Q9UPN7 881 aa24.61■■□□□ 1.53
TRA2B-201ENST00000259043 ADRA2BP18089 450 aa24.53■■□□□ 1.52
TRA2B-201ENST00000259043 POTEDQ86YR6 584 aa24.45■■□□□ 1.5
TRA2B-201ENST00000259043 MAPK8IP2Q13387 824 aaPredicted RBP22.56■■□□□ 1.2
TRA2B-201ENST00000259043 SCAF1Q9H7N4 1312 aaKnown RBP22.52■■□□□ 1.2
TRA2B-201ENST00000259043 DMRT2Q9Y5R5 561 aa22.49■■□□□ 1.19
TRA2B-201ENST00000259043 PPP4R3CPQ6ZMV5 832 aa21.94■■□□□ 1.1
TRA2B-201ENST00000259043 HOXD11P31277 338 aaPredicted RBP21.61■■□□□ 1.05
TRA2B-201ENST00000259043 CNKSR2Q8WXI2 1034 aa21.58■■□□□ 1.05
TRA2B-201ENST00000259043 DCAF8L1A6NGE4 600 aa21.55■■□□□ 1.04
TRA2B-201ENST00000259043 RNF216Q9NWF9 866 aaPredicted RBP21.42■■□□□ 1.02
TRA2B-201ENST00000259043 CACNB1Q02641 598 aaPredicted RBP21.39■■□□□ 1.01
TRA2B-201ENST00000259043 RNF39Q9H2S5 420 aa21.17■□□□□ 0.98
TRA2B-201ENST00000259043 NCBP3Q53F19 620 aaKnown RBP21.09■□□□□ 0.97
TRA2B-201ENST00000259043 DNAJC5BQ9UF47 199 aa20.94■□□□□ 0.94
TRA2B-201ENST00000259043 C1QBPQ07021 282 aaKnown RBP20.87■□□□□ 0.93
TRA2B-201ENST00000259043 NPM3O75607 178 aaKnown RBP20.74■□□□□ 0.91
TRA2B-201ENST00000259043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.59■□□□□ 0.892e-9■■□□□ 11.4
TRA2B-201ENST00000259043 KCNA4P22459 653 aa20.22■□□□□ 0.83
TRA2B-201ENST00000259043 U3KPZ7 1027 aaPredicted RBP20.13■□□□□ 0.81
TRA2B-201ENST00000259043 CAPN15O75808 1086 aa19.86■□□□□ 0.77
TRA2B-201ENST00000259043 SPINK5Q9NQ38 1064 aaPredicted RBP19.86■□□□□ 0.77
TRA2B-201ENST00000259043 SLC4A2P04920 1241 aa19.84■□□□□ 0.77
TRA2B-201ENST00000259043 DSG3P32926 999 aa19.77■□□□□ 0.76
TRA2B-201ENST00000259043 APLP2Q06481 763 aa19.62■□□□□ 0.73
TRA2B-201ENST00000259043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.56■□□□□ 0.72
TRA2B-201ENST00000259043 HNRNPUL2Q1KMD3 747 aaKnown RBP19.56■□□□□ 0.72
TRA2B-201ENST00000259043 TRHP20396 242 aaPredicted RBP19.5■□□□□ 0.71
TRA2B-201ENST00000259043 ZNF219Q9P2Y4 722 aaPredicted RBP19.5■□□□□ 0.71
TRA2B-201ENST00000259043 SAMD1Q6SPF0 538 aaPredicted RBP19.43■□□□□ 0.7
TRA2B-201ENST00000259043 ABCB7O75027 752 aa19.36■□□□□ 0.69
TRA2B-201ENST00000259043 MYCNP04198 464 aaPredicted RBP19.22■□□□□ 0.67
TRA2B-201ENST00000259043 POTEHQ6S545 545 aa19.14■□□□□ 0.65
TRA2B-201ENST00000259043 SLC4A1APQ9BWU0 796 aaKnown RBP19.07■□□□□ 0.64
TRA2B-201ENST00000259043 POLA2Q14181 598 aa18.96■□□□□ 0.63
TRA2B-201ENST00000259043 FOXD4L1Q9NU39 408 aa18.93■□□□□ 0.62
TRA2B-201ENST00000259043 RBM42Q9BTD8 480 aaKnown RBP18.91■□□□□ 0.62
TRA2B-201ENST00000259043 ATF5Q9Y2D1 282 aaPredicted RBP18.74■□□□□ 0.59
TRA2B-201ENST00000259043 ZBTB12Q9Y330 459 aaPredicted RBP18.6■□□□□ 0.57
TRA2B-201ENST00000259043 ZBTB22O15209 634 aa18.56■□□□□ 0.56
TRA2B-201ENST00000259043 CHRDL2Q6WN34 429 aa18.52■□□□□ 0.56
TRA2B-201ENST00000259043 AKT1S1Q96B36 256 aa18.44■□□□□ 0.54
TRA2B-201ENST00000259043 ATXN8OSP0DMR3 200 aa18.4■□□□□ 0.54
TRA2B-201ENST00000259043 OSCARQ8IYS5 282 aa18.33■□□□□ 0.52
TRA2B-201ENST00000259043 REM2Q8IYK8 340 aaPredicted RBP18.24■□□□□ 0.51
TRA2B-201ENST00000259043 FBLN2P98095 1184 aa18.08■□□□□ 0.48
TRA2B-201ENST00000259043 PITPNM1O00562 1244 aa18.04■□□□□ 0.48
TRA2B-201ENST00000259043 PIP4P2Q8N4L2 257 aa18.04■□□□□ 0.48
TRA2B-201ENST00000259043 SPDYE2BA6NHP3 402 aa18■□□□□ 0.47
TRA2B-201ENST00000259043 SPDYE6P0CI01 402 aa18■□□□□ 0.47
TRA2B-201ENST00000259043 SPDYE2Q495Y8 402 aa18■□□□□ 0.47
TRA2B-201ENST00000259043 FXR2P51116 673 aaKnown RBP eCLIP17.93■□□□□ 0.46
TRA2B-201ENST00000259043 SP7Q8TDD2 431 aaPredicted RBP17.89■□□□□ 0.45
TRA2B-201ENST00000259043 MKRN4PQ13434 485 aaPredicted RBP17.87■□□□□ 0.45
TRA2B-201ENST00000259043 CSRNP3Q8WYN3 585 aa17.82■□□□□ 0.44
TRA2B-201ENST00000259043 EHMT2Q96KQ7 1210 aa17.82■□□□□ 0.44
TRA2B-201ENST00000259043 HAX1O00165 279 aa17.76■□□□□ 0.43
TRA2B-201ENST00000259043 ZNF692Q9BU19 519 aaPredicted RBP17.75■□□□□ 0.43
TRA2B-201ENST00000259043 SPDYE1Q8NFV5 336 aaPredicted RBP17.72■□□□□ 0.43
TRA2B-201ENST00000259043 SSUH2Q9Y2M2 353 aa17.72■□□□□ 0.43
TRA2B-201ENST00000259043 CLEC11AQ9Y240 323 aa17.67■□□□□ 0.42
TRA2B-201ENST00000259043 PRKAR2AP13861 404 aaKnown RBP17.58■□□□□ 0.4
TRA2B-201ENST00000259043 EVX2Q03828 476 aa17.49■□□□□ 0.39
TRA2B-201ENST00000259043 PABPN1Q86U42 306 aaKnown RBP eCLIP17.47■□□□□ 0.39
TRA2B-201ENST00000259043 PRR29P0C7W0 189 aa17.38■□□□□ 0.37
TRA2B-201ENST00000259043 C19orf67A6NJJ6 358 aa17.35■□□□□ 0.37
TRA2B-201ENST00000259043 CHADLQ6NUI6 762 aa17.32■□□□□ 0.36
TRA2B-201ENST00000259043 GABBR2O75899 941 aa17.13■□□□□ 0.33
TRA2B-201ENST00000259043 FARP1Q9Y4F1 1045 aaPredicted RBP17.09■□□□□ 0.33
TRA2B-201ENST00000259043 CD44P16070 742 aaKnown RBP17.02■□□□□ 0.32
TRA2B-201ENST00000259043 STAG3Q9UJ98 1225 aa17■□□□□ 0.31
TRA2B-201ENST00000259043 SPDYE4A6NLX3 237 aa16.99■□□□□ 0.31
TRA2B-201ENST00000259043 CREBZFQ9NS37 354 aa16.89■□□□□ 0.29
TRA2B-201ENST00000259043 CLCN6P51797 869 aa16.88■□□□□ 0.29
TRA2B-201ENST00000259043 LHX8Q68G74 356 aa16.77■□□□□ 0.28
TRA2B-201ENST00000259043 ZNF579Q8NAF0 562 aaKnown RBP16.76■□□□□ 0.27
TRA2B-201ENST00000259043 ZRANB1Q9UGI0 708 aa16.75■□□□□ 0.27
TRA2B-201ENST00000259043 POTEIP0CG38 1075 aa16.74■□□□□ 0.27
TRA2B-201ENST00000259043 DCBLD2Q96PD2 775 aa16.66■□□□□ 0.26
TRA2B-201ENST00000259043 PAK3O75914 559 aaPredicted RBP16.62■□□□□ 0.25
TRA2B-201ENST00000259043 NPM1P06748 294 aaKnown RBP eCLIP16.62■□□□□ 0.25
TRA2B-201ENST00000259043 MNX1P50219 401 aaPredicted RBP16.59■□□□□ 0.25
TRA2B-201ENST00000259043 PROM2Q8N271 834 aa16.56■□□□□ 0.24
TRA2B-201ENST00000259043 GALR2O43603 387 aaPredicted RBP16.54■□□□□ 0.24
TRA2B-201ENST00000259043 PHF12Q96QT6 1004 aa16.49■□□□□ 0.23
TRA2B-201ENST00000259043 PLEKHG5O94827 1062 aa16.27■□□□□ 0.2
TRA2B-201ENST00000259043 MS4A3Q96HJ5 214 aa16.27■□□□□ 0.2
TRA2B-201ENST00000259043 TSPYL2Q9H2G4 693 aaPredicted RBP16.27■□□□□ 0.2
TRA2B-201ENST00000259043 MIER1Q8N108 512 aa16.23■□□□□ 0.19
TRA2B-201ENST00000259043 PELP1Q8IZL8 1130 aaKnown RBP16.22■□□□□ 0.19
TRA2B-201ENST00000259043 CCDC61Q9Y6R9 512 aa16.22■□□□□ 0.19
TRA2B-201ENST00000259043 ASTLQ6HA08 431 aaPredicted RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms