RNA–Protein interactions for RNA: ENSMUST00000106035.7

Ccdc28b-202, Transcript of Coiled-coil domain-containing protein 28B, mousemouse

TSL 1 (best) BASIC

Gene Ccdc28b, Length 821 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28b-202ENSMUST00000106035 Gm35339A0A140LHH9 1649 aa28.49■■■□□ 2.15
Ccdc28b-202ENSMUST00000106035 NischQ80TM9 1593 aa28■■■□□ 2.07
Ccdc28b-202ENSMUST00000106035 Abcc8B2RUS7 1588 aa27.18■■□□□ 1.94
Ccdc28b-202ENSMUST00000106035 Abcc9P70170 1546 aa27.07■■□□□ 1.92
Ccdc28b-202ENSMUST00000106035 ScribQ80U72 1612 aa26.28■■□□□ 1.8
Ccdc28b-202ENSMUST00000106035 NacadQ5SWP3 1504 aa25.49■■□□□ 1.67
Ccdc28b-202ENSMUST00000106035 Kdm5dQ62240 1548 aa25.36■■□□□ 1.65
Ccdc28b-202ENSMUST00000106035 Dcaf1Q80TR8 1506 aa25.01■■□□□ 1.59
Ccdc28b-202ENSMUST00000106035 Sycp2Q9CUU3 1500 aa25■■□□□ 1.59
Ccdc28b-202ENSMUST00000106035 BicraF8VPZ9 1578 aa24.66■■□□□ 1.54
Ccdc28b-202ENSMUST00000106035 Rb1cc1Q9ESK9 1588 aa24.34■■□□□ 1.49
Ccdc28b-202ENSMUST00000106035 Dnajc5bQ9CQ94 199 aa24.32■■□□□ 1.48
Ccdc28b-202ENSMUST00000106035 Crybg2B7ZCC2 1516 aa24.11■■□□□ 1.45
Ccdc28b-202ENSMUST00000106035 Pds5bQ4VA53 1446 aaKnown RBP24.07■■□□□ 1.44
Ccdc28b-202ENSMUST00000106035 Ccdc180J3QNE4 1664 aa24.03■■□□□ 1.44
Ccdc28b-202ENSMUST00000106035 Baz1aO88379 1555 aa24.03■■□□□ 1.44
Ccdc28b-202ENSMUST00000106035 Thoc2B1AZI6 1594 aaKnown RBP23.9■■□□□ 1.42
Ccdc28b-202ENSMUST00000106035 Rhox8Q6VSS7 320 aa23.89■■□□□ 1.41
Ccdc28b-202ENSMUST00000106035 Atad2bE9Q166 1460 aaKnown RBP23.8■■□□□ 1.4
Ccdc28b-202ENSMUST00000106035 Zcchc6Q5BLK4 1491 aaKnown RBP23.66■■□□□ 1.38
Ccdc28b-202ENSMUST00000106035 Ercc6F8VPZ5 1481 aa23.47■■□□□ 1.35
Ccdc28b-202ENSMUST00000106035 Cc2d2aQ8CFW7 1633 aa23.47■■□□□ 1.35
Ccdc28b-202ENSMUST00000106035 Smarca2Q6DIC0 1577 aa23.46■■□□□ 1.35
Ccdc28b-202ENSMUST00000106035 Smarca4Q3TKT4 1613 aaKnown RBP23.44■■□□□ 1.34
Ccdc28b-202ENSMUST00000106035 Iqgap2Q3UQ44 1575 aa23.34■■□□□ 1.33
Ccdc28b-202ENSMUST00000106035 Fam135aQ6NS59 1506 aa23.33■■□□□ 1.32
Ccdc28b-202ENSMUST00000106035 Cecr2E9Q2Z1 1453 aa23.32■■□□□ 1.32
Ccdc28b-202ENSMUST00000106035 Wdr62Q3U3T8 1523 aa23.21■■□□□ 1.31
Ccdc28b-202ENSMUST00000106035 Frmpd1A2AKB4 1549 aa23.18■■□□□ 1.3
Ccdc28b-202ENSMUST00000106035 Baz1bQ9Z277 1479 aa23.18■■□□□ 1.3
Ccdc28b-202ENSMUST00000106035 Phldb1Q6PDH0 1371 aaKnown RBP23.16■■□□□ 1.3
Ccdc28b-202ENSMUST00000106035 Ubl4bQ9CQ84 188 aa22.93■■□□□ 1.26
Ccdc28b-202ENSMUST00000106035 CftrP26361 1476 aa22.79■■□□□ 1.24
Ccdc28b-202ENSMUST00000106035 Mrc2Q64449 1479 aa22.77■■□□□ 1.24
Ccdc28b-202ENSMUST00000106035 Unc13aQ4KUS2 1712 aa22.76■■□□□ 1.23
Ccdc28b-202ENSMUST00000106035 Cttnbp2B9EJA2 1648 aa22.71■■□□□ 1.23
Ccdc28b-202ENSMUST00000106035 Brd4Q9ESU6 1400 aaKnown RBP22.67■■□□□ 1.22
Ccdc28b-202ENSMUST00000106035 Synj1Q8CHC4 1574 aa22.63■■□□□ 1.21
Ccdc28b-202ENSMUST00000106035 Rtl1Q7M732 1744 aa22.62■■□□□ 1.21
Ccdc28b-202ENSMUST00000106035 Ccdc136Q3TVA9 1136 aa22.43■■□□□ 1.18
Ccdc28b-202ENSMUST00000106035 Rsf1E9PWW9 1441 aaKnown RBP22.31■■□□□ 1.16
Ccdc28b-202ENSMUST00000106035 Cux2P70298 1426 aa22.31■■□□□ 1.16
Ccdc28b-202ENSMUST00000106035 Esf1Q3V1V3 845 aaKnown RBP22.3■■□□□ 1.16
Ccdc28b-202ENSMUST00000106035 Dnajc5P60904 198 aa22.29■■□□□ 1.16
Ccdc28b-202ENSMUST00000106035 Kif15Q6P9L6 1387 aa22.26■■□□□ 1.15
Ccdc28b-202ENSMUST00000106035 Lrriq1Q0P5X1 1673 aa22.22■■□□□ 1.15
Ccdc28b-202ENSMUST00000106035 Trim41Q5NCC3 630 aa22.18■■□□□ 1.14
Ccdc28b-202ENSMUST00000106035 Lamc3Q9R0B6 1581 aa22.16■■□□□ 1.14
Ccdc28b-202ENSMUST00000106035 Kif21aQ9QXL2 1672 aa22.1■■□□□ 1.13
Ccdc28b-202ENSMUST00000106035 Npm1Q61937 292 aaKnown RBP22.08■■□□□ 1.13
Ccdc28b-202ENSMUST00000106035 Cep164Q5DU05 1446 aa21.98■■□□□ 1.11
Ccdc28b-202ENSMUST00000106035 Eif4g3Q80XI3 1579 aaKnown RBP21.93■■□□□ 1.1
Ccdc28b-202ENSMUST00000106035 Shroom2A2ALU4 1481 aa21.88■■□□□ 1.09
Ccdc28b-202ENSMUST00000106035 Dhx29Q6PGC1 1365 aaKnown RBP21.84■■□□□ 1.09
Ccdc28b-202ENSMUST00000106035 Urb2E9Q7L1 1524 aaKnown RBP21.83■■□□□ 1.09
Ccdc28b-202ENSMUST00000106035 Ccdc18Q640L5 1455 aa21.83■■□□□ 1.08
Ccdc28b-202ENSMUST00000106035 TnnQ80Z71 1560 aa21.82■■□□□ 1.08
Ccdc28b-202ENSMUST00000106035 LrpprcQ6PB66 1392 aaKnown RBP21.8■■□□□ 1.08
Ccdc28b-202ENSMUST00000106035 Plb1Q3TTY0 1478 aa21.79■■□□□ 1.08
Ccdc28b-202ENSMUST00000106035 Golga3P55937 1487 aa21.77■■□□□ 1.07
Ccdc28b-202ENSMUST00000106035 Top2bQ64511 1612 aa21.75■■□□□ 1.07
Ccdc28b-202ENSMUST00000106035 Il27Q8K3I6 234 aa21.7■■□□□ 1.06
Ccdc28b-202ENSMUST00000106035 Camsap1A2AHC3 1581 aa21.7■■□□□ 1.06
Ccdc28b-202ENSMUST00000106035 Crocc2F6XLV1 1638 aa21.67■■□□□ 1.06
Ccdc28b-202ENSMUST00000106035 PogzQ8BZH4 1409 aaKnown RBP21.63■■□□□ 1.05
Ccdc28b-202ENSMUST00000106035 Ift140E9PY46 1464 aa21.62■■□□□ 1.05
Ccdc28b-202ENSMUST00000106035 Pabpn1Q8CCS6 302 aaKnown RBP21.61■■□□□ 1.05
Ccdc28b-202ENSMUST00000106035 Col17a1Q07563 1470 aa21.59■■□□□ 1.05
Ccdc28b-202ENSMUST00000106035 Fmn1Q05860 1466 aa21.58■■□□□ 1.04
Ccdc28b-202ENSMUST00000106035 Cngb1E1AZ71 1325 aa21.57■■□□□ 1.04
Ccdc28b-202ENSMUST00000106035 Rusc2Q80U22 1514 aa21.54■■□□□ 1.04
Ccdc28b-202ENSMUST00000106035 Duox2A2AQ99 1517 aa21.5■■□□□ 1.03
Ccdc28b-202ENSMUST00000106035 Disp1Q3TDN0 1521 aa21.44■■□□□ 1.02
Ccdc28b-202ENSMUST00000106035 Grin2bQ01097 1482 aa21.42■■□□□ 1.02
Ccdc28b-202ENSMUST00000106035 Efcab5A0JP43 1406 aa21.38■■□□□ 1.01
Ccdc28b-202ENSMUST00000106035 Cc2d2bA0A286YDU8 1405 aa21.36■■□□□ 1.01
Ccdc28b-202ENSMUST00000106035 Nup160Q9Z0W3 1402 aaKnown RBP21.36■■□□□ 1.01
Ccdc28b-202ENSMUST00000106035 Zcchc11B2RX14 1644 aaKnown RBP21.34■■□□□ 1.01
Ccdc28b-202ENSMUST00000106035 Pelp1Q9DBD5 1123 aaKnown RBP21.34■■□□□ 1.01
Ccdc28b-202ENSMUST00000106035 Pbrm1Q8BSQ9 1634 aaKnown RBP21.29■■□□□ 1
Ccdc28b-202ENSMUST00000106035 Samd9lQ69Z37 1561 aa21.27■■□□□ 1
Ccdc28b-202ENSMUST00000106035 Setd1bQ8CFT2 1985 aa21.25■□□□□ 0.99
Ccdc28b-202ENSMUST00000106035 NrkQ9R0G8 1455 aa21.17■□□□□ 0.98
Ccdc28b-202ENSMUST00000106035 Grin2aP35436 1464 aa21.14■□□□□ 0.98
Ccdc28b-202ENSMUST00000106035 Rad54l2Q99NG0 1466 aa21.14■□□□□ 0.98
Ccdc28b-202ENSMUST00000106035 Fgd6Q69ZL1 1399 aa21.14■□□□□ 0.98
Ccdc28b-202ENSMUST00000106035 AqrQ8CFQ3 1481 aaKnown RBP21.13■□□□□ 0.97
Ccdc28b-202ENSMUST00000106035 Magi3Q9EQJ9 1476 aa21.13■□□□□ 0.97
Ccdc28b-202ENSMUST00000106035 Ccdc88bQ4QRL3 1481 aa21.09■□□□□ 0.97
Ccdc28b-202ENSMUST00000106035 Top2aQ01320 1528 aaKnown RBP21.09■□□□□ 0.97
Ccdc28b-202ENSMUST00000106035 Adgrl3Q80TS3 1537 aa21.05■□□□□ 0.96
Ccdc28b-202ENSMUST00000106035 PtprkP35822 1457 aa21.05■□□□□ 0.96
Ccdc28b-202ENSMUST00000106035 Gpatch8A2A6A1 1505 aa21.04■□□□□ 0.96
Ccdc28b-202ENSMUST00000106035 Shroom4Q1W617 1475 aa21.01■□□□□ 0.95
Ccdc28b-202ENSMUST00000106035 Gapvd1Q6PAR5 1458 aa21.01■□□□□ 0.95
Ccdc28b-202ENSMUST00000106035 Gm156Q58A37 223 aa21■□□□□ 0.95
Ccdc28b-202ENSMUST00000106035 Cep170Q6A065 1588 aa20.97■□□□□ 0.95
Ccdc28b-202ENSMUST00000106035 Pla2r1Q62028 1487 aa20.97■□□□□ 0.95
Ccdc28b-202ENSMUST00000106035 Arhgef5E9Q7D5 1581 aa20.95■□□□□ 0.94
Ccdc28b-202ENSMUST00000106035 SynmQ70IV5 1561 aa20.95■□□□□ 0.94
Retrieved 100 of 22,080 RNA–protein pairs in 88.5 ms