RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 MS4A2Q01362 244 aa7.6□□□□□ -1.19
NEK3-207ENST00000617054 DDX39BQ13838 428 aaKnown RBP7.6□□□□□ -1.19
NEK3-207ENST00000617054 GBX1Q14549 363 aa7.6□□□□□ -1.19
NEK3-207ENST00000617054 PTGR1Q14914 329 aa7.6□□□□□ -1.19
NEK3-207ENST00000617054 AP5B1Q2VPB7 878 aa7.6□□□□□ -1.19
NEK3-207ENST00000617054 PLEKHS1Q5SXH7 462 aa7.6□□□□□ -1.19
NEK3-207ENST00000617054 REP15Q6BDI9 236 aa7.6□□□□□ -1.19
NEK3-207ENST00000617054 CHST15Q7LFX5 561 aaPredicted RBP7.6□□□□□ -1.19
NEK3-207ENST00000617054 SLC44A3Q8N4M1 653 aa7.6□□□□□ -1.19
NEK3-207ENST00000617054 MCOLN3Q8TDD5 553 aa7.6□□□□□ -1.19
NEK3-207ENST00000617054 HCAR2Q8TDS4 363 aa7.6□□□□□ -1.19
NEK3-207ENST00000617054 IL17FQ96PD4 163 aa7.6□□□□□ -1.19
NEK3-207ENST00000617054 VPS35Q96QK1 796 aa7.6□□□□□ -1.19
NEK3-207ENST00000617054 PCDHAC1Q9H158 963 aa7.6□□□□□ -1.19
NEK3-207ENST00000617054 RSPH9Q9H1X1 276 aaPredicted RBP7.6□□□□□ -1.19
NEK3-207ENST00000617054 NDRG2Q9UN36 371 aaKnown RBP7.6□□□□□ -1.19
NEK3-207ENST00000617054 KIAA1549LQ6ZVL6 1849 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 SLC5A10A0PJK1 596 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 E7ENX8 843 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 H0Y8X5 98 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 RNASEH1O60930 286 aaKnown RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 LILRB5O75023 590 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 BAG2O95816 211 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 SNRPB2P08579 225 aaKnown RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 CBSLP0DN79 551 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 HOXB2P14652 356 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 SLC2A4P14672 509 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 MAP4P27816 1152 aaKnown RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 IL12AP29459 219 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 CBSP35520 551 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 HALP42357 657 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 PFN3P60673 137 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 STX1BP61266 288 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 RIPK1Q13546 671 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 CAMK2GQ13555 558 aaPredicted RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 CEACAM7Q14002 265 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 PTK2BQ14289 1009 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 SQLEQ14534 574 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 STARD3Q14849 445 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 ATP6AP1LQ52LC2 224 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 PNCKQ6P2M8 343 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 XKR5Q6UX68 686 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 RPLP0P6Q8NHW5 317 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 PKP4Q99569 1192 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 ACAT2Q9BWD1 397 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 HDAC8Q9BY41 377 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 MRPL1Q9BYD6 325 aaKnown RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 TRIM54Q9BYV2 358 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 SLC32A1Q9H598 525 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 EFCAB1Q9HAE3 211 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 TRIM39Q9HCM9 518 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 POMPQ9Y244 141 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 PRAMEF33A0A0G2JMD5 474 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 PABPN1LA6NDY0 278 aaKnown RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 SOX1O00570 391 aaPredicted RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 DNAJA2O60884 412 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 ULK1O75385 1050 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 MATN4O95460 622 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 ANP32DO95626 131 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 PDYNP01213 254 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 XRCC1P18887 633 aaPredicted RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 NTSR1P30989 418 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 MTHFRP42898 656 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 RAP1GDS1P52306 607 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 DGKQP52824 942 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 PRSS12P56730 875 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 CLDN2P57739 230 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 RPL38P63173 70 aaKnown RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 MEF2AQ02078 507 aaPredicted RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 LRRC36Q1X8D7 754 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 TMEM52BQ4KMG9 183 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 XKR7Q5GH72 579 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 IL23RQ5VWK5 629 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 FAM46CQ5VWP2 391 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 DUS1LQ6P1R4 473 aaKnown RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 NLRP8Q86W28 1048 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 NRSN1Q8IZ57 195 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 RGL4Q8IZJ4 473 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 MIER2Q8N344 545 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 FBXW8Q8N3Y1 598 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 SLC26A7Q8TE54 656 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 GFM2Q969S9 779 aaKnown RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 HIC2Q96JB3 615 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 OR4K3Q96R72 315 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 MTERF1Q99551 399 aaKnown RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 OCSTAMPQ9BR26 566 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 RNPEPL1Q9HAU8 725 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 C2orf42Q9NWW7 574 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 SH2B3Q9UQQ2 575 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 TDRKHQ9Y2W6 561 aaKnown RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 POLR3HQ9Y535 204 aaPredicted RBP7.59□□□□□ -1.19
NEK3-207ENST00000617054 GPR45Q9Y5Y3 372 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 ST14Q9Y5Y6 855 aa7.59□□□□□ -1.19
NEK3-207ENST00000617054 A0A1W2PQU0 124 aa7.58□□□□□ -1.2
NEK3-207ENST00000617054 ARHGAP10A1A4S6 786 aa7.58□□□□□ -1.2
NEK3-207ENST00000617054 E7EQ34 232 aa7.58□□□□□ -1.2
NEK3-207ENST00000617054 PSMD11O00231 422 aa7.58□□□□□ -1.2
NEK3-207ENST00000617054 LSM1O15116 133 aaKnown RBP7.58□□□□□ -1.2
NEK3-207ENST00000617054 SNUPNO95149 360 aaKnown RBP7.58□□□□□ -1.2
NEK3-207ENST00000617054 B3GALT4O96024 378 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms