RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NSUN3Q9H649 340 aaKnown RBP17.96■□□□□ 0.47
UPF1-210ENST00000600689 TPRKBQ9Y3C4 175 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 PCDHGC4Q9Y5F7 938 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 A0A0D9SEW6 157 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 RGS10O43665 173 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 VPS26AO75436 327 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 FKBP9O95302 570 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 ASGR1P07306 291 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 ARPP19P56211 112 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 MVKQ03426 396 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 FKBP9P1Q75LS8 142 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 VTCN1Q7Z7D3 282 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 MSRB3Q8IXL7 192 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 LPCAT1Q8NF37 534 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 RHOXF1Q8NHV9 184 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 GTF2H4Q92759 462 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 ZNF300Q96RE9 604 aaPredicted RBP17.96■□□□□ 0.47
UPF1-210ENST00000600689 ZYG11BQ9C0D3 744 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 NEK6Q9HC98 313 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 TRMT13Q9NUP7 481 aaKnown RBP17.96■□□□□ 0.47
UPF1-210ENST00000600689 PDP1Q9P0J1 537 aaPredicted RBP17.96■□□□□ 0.47
UPF1-210ENST00000600689 CCNKO75909 580 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 HPRP00739 348 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 VIPP01282 170 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 GRK4P32298 578 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 BMPR1AP36894 532 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 PPP5CP53041 499 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 TBX4P57082 545 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 IL2P60568 153 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 MGAT3Q09327 533 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 MS4A13Q5J8X5 152 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 FBXL22Q6P050 247 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 MSANTD2Q6P1R3 559 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 PAF1Q8N7H5 531 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 PIK3C3Q8NEB9 887 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 INPP5KQ9BT40 448 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 KLHL3Q9UH77 587 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 NEUROG3Q9Y4Z2 214 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 SCAMP3O14828 347 aaKnown RBP17.95■□□□□ 0.46
UPF1-210ENST00000600689 PER2O15055 1255 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 CYP2C18P33260 490 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 LIPAP38571 399 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 EIF2DP41214 584 aaKnown RBP17.95■□□□□ 0.46
UPF1-210ENST00000600689 FLT3LGP49771 235 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 GPR153Q6NV75 609 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 GOLGA7Q7Z5G4 137 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 METTL23Q86XA0 190 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 C17orf50Q8WW18 174 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 BTN2A3PQ96KV6 586 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 TSSK3Q96PN8 268 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 BTBD2Q9BX70 525 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 POLR1EQ9GZS1 481 aaKnown RBP17.95■□□□□ 0.46
UPF1-210ENST00000600689 KAT8Q9H7Z6 458 aaKnown RBP17.95■□□□□ 0.46
UPF1-210ENST00000600689 EIF3LQ9Y262 564 aaKnown RBP17.95■□□□□ 0.46
UPF1-210ENST00000600689 TMEM98Q9Y2Y6 226 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 M0R129 80 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 AIREO43918 545 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 RGRP47804 291 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 DAPP51397 102 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 CD300LGQ6UXG3 332 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 TTC29Q8NA56 475 aaPredicted RBP17.95■□□□□ 0.46
UPF1-210ENST00000600689 OR7D4Q8NG98 312 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 BRSK1Q8TDC3 778 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 NUSAP1Q9BXS6 441 aaKnown RBP17.95■□□□□ 0.46
UPF1-210ENST00000600689 ACOT13Q9NPJ3 140 aa17.95■□□□□ 0.46
UPF1-210ENST00000600689 UPK1BO75841 260 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 PGRP06401 933 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 GADD45AP24522 165 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 MC4RP32245 332 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 CA8P35219 290 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 RACK1P63244 317 aaKnown RBP17.94■□□□□ 0.46
UPF1-210ENST00000600689 GBX1Q14549 363 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 FAM214AQ32MH5 1076 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 SLC39A12Q504Y0 691 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 OVOS1Q6IE37 1185 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 TMC5Q6UXY8 1006 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 SVOPLQ8N434 492 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 DPP10Q8N608 796 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 YIPF6Q96EC8 236 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 ZNF486Q96H40 463 aaPredicted RBP17.94■□□□□ 0.46
UPF1-210ENST00000600689 PPP1R2P1Q96PQ5 205 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 ADAM2Q99965 735 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 NYNRINQ9P2P1 1898 aaKnown RBP17.94■□□□□ 0.46
UPF1-210ENST00000600689 GUCY1B2O75343 617 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 IGLV3-25P01717 112 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 MSH3P20585 1137 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 AQP1P29972 269 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 KRT20P35900 424 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 FCGRTP55899 365 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 KCNA10Q16322 511 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 CCBE1Q6UXH8 406 aaPredicted RBP17.94■□□□□ 0.46
UPF1-210ENST00000600689 PJA1Q8NG27 643 aa17.94■□□□□ 0.46
UPF1-210ENST00000600689 MKI67P46013 3256 aaKnown RBP17.94■□□□□ 0.46
UPF1-210ENST00000600689 NBNO60934 754 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 ABCB1P08183 1280 aaPredicted RBP17.93■□□□□ 0.46
UPF1-210ENST00000600689 CCDC159P0C7I6 412 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 PKMP14618 531 aaKnown RBP17.93■□□□□ 0.46
UPF1-210ENST00000600689 CCND3P30281 292 aaPredicted RBP17.93■□□□□ 0.46
UPF1-210ENST00000600689 DGKEP52429 567 aa17.93■□□□□ 0.46
UPF1-210ENST00000600689 SLC35A2P78381 396 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms