RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 MAGEC3Q8TD91 643 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 RAD51AP1Q96B01 352 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 SLC22A18Q96BI1 424 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 MED8Q96G25 268 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 FOPNLQ96NB1 174 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 LRFN5Q96NI6 719 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 TRIM56Q9BRZ2 755 aaKnown RBP14.35□□□□□ -0.11
SS18-212ENST00000579061 KLHL42Q9P2K6 505 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 IL17BQ9UHF5 180 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 KCND3Q9UK17 655 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 CROTQ9UKG9 612 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 CRYL1Q9Y2S2 319 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 PCDHGA6Q9Y5G7 932 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 COMMD10Q9Y6G5 202 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 A0A0J9YY10 115 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 C21orf140B9A014 251 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 NIPSNAP2O75323 286 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 SCRG1O75711 98 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 FKBP9O95302 570 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 PGAM1P18669 254 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 DLSTP36957 453 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 GRB7Q14451 532 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 MORF4L2Q15014 288 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 TBR1Q16650 682 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 IZUMO3Q5VZ72 239 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 C19orf47Q8N9M1 422 aaKnown RBP14.34□□□□□ -0.11
SS18-212ENST00000579061 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.34□□□□□ -0.11
SS18-212ENST00000579061 OR2L8Q8NGY9 312 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 GABPB2Q8TAK5 448 aaPredicted RBP14.34□□□□□ -0.11
SS18-212ENST00000579061 STARD8Q92502 1023 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 EXTL1Q92935 676 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 TCTN2Q96GX1 697 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 C20orf96Q9NUD7 363 aaPredicted RBP14.34□□□□□ -0.11
SS18-212ENST00000579061 SPHK1Q9NYA1 384 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 SERTAD3Q9UJW9 196 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 PLAGL1Q9UM63 463 aa14.34□□□□□ -0.11
SS18-212ENST00000579061 ISM1B1AKI9 464 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 TMEM150CB9EJG8 249 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 E5RI56 91 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 RASGRF2O14827 1237 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 C1QL1O75973 258 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 MATN4O95460 622 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 C1orf105O95561 183 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 NTRK1P04629 796 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 SFTPCP11686 197 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 PVRP15151 417 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 TCN2P20062 427 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 CHRM3P20309 590 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 CD9P21926 228 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 F8A1P23610 371 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 PEBP1P30086 187 aaKnown RBP14.33□□□□□ -0.12
SS18-212ENST00000579061 CYP4F2P78329 520 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 DR1Q01658 176 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 C19orf57Q0VDD7 668 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 CDC20Q12834 499 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 CTBP1Q13363 440 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 ZNF789Q5FWF6 425 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 BORAQ6PGQ7 559 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 ZNF517Q6ZMY9 492 aaPredicted RBP14.33□□□□□ -0.12
SS18-212ENST00000579061 CDHR3Q6ZTQ4 885 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 NEK10Q6ZWH5 1172 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 DENND6AQ8IWF6 608 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 KLHL7Q8IXQ5 586 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 RAB42Q8N4Z0 105 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 ZBTB2Q8N680 514 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 LINC01555Q8NAE3 123 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 OR1L3Q8NH93 324 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 HMGCLL1Q8TB92 370 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 EBNA1BP2Q99848 306 aaKnown RBP14.33□□□□□ -0.12
SS18-212ENST00000579061 ARHGAP9Q9BRR9 750 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 FAM167BQ9BTA0 163 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 GPR87Q9BY21 358 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 CCDC68Q9H2F9 335 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 IL1RAPL1Q9NZN1 696 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 FBXO5Q9UKT4 447 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 SLC39A10Q9ULF5 831 aa14.33□□□□□ -0.12
SS18-212ENST00000579061 FASNP49327 2511 aaKnown RBP14.33□□□□□ -0.12
SS18-212ENST00000579061 NDC80O14777 642 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 NKX2-8O15522 239 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 KLK3P07288 261 aaPredicted RBP14.32□□□□□ -0.12
SS18-212ENST00000579061 HBQ1P09105 142 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 SLC1A2P43004 574 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 GABRA4P48169 554 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 ITGA1P56199 1179 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 DHX9Q08211 1270 aaKnown RBP14.32□□□□□ -0.12
SS18-212ENST00000579061 DNASE1L3Q13609 305 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 LY6DQ14210 128 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 CRYMQ14894 314 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 TTLL9Q3SXZ7 439 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 SPANXN3Q5MJ09 141 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 KCNMB4Q86W47 210 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 PDIK1LQ8N165 341 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 ZNF843Q8N446 348 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 CT55Q8WUE5 264 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 SKA2Q8WVK7 121 aaPredicted RBP14.32□□□□□ -0.12
SS18-212ENST00000579061 SEC14L1Q92503 715 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 KCNJ9Q92806 393 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 LRRC39Q96DD0 335 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 KLHL25Q9H0H3 589 aa14.32□□□□□ -0.12
SS18-212ENST00000579061 ADNPQ9H2P0 1102 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms