RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TRAPPC9Q96Q05 1148 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 OR2A14Q96R47 310 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 KRT12Q99456 494 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 EBNA1BP2Q99848 306 aaKnown RBP14.55□□□□□ -0.08
VPS39-210ENST00000568357 TUBB2BQ9BVA1 445 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 TRIM4Q9C037 500 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 FBXO6Q9NRD1 293 aaPredicted RBP14.55□□□□□ -0.08
VPS39-210ENST00000568357 INTS10Q9NVR2 710 aaKnown RBP14.55□□□□□ -0.08
VPS39-210ENST00000568357 OR6C2Q9NZP2 312 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 RARRES3Q9UL19 164 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 RUVBL2Q9Y230 463 aaKnown RBP14.55□□□□□ -0.08
VPS39-210ENST00000568357 NFS1Q9Y697 457 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 PIPSLA2A3N6 862 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 H3BMM5 538 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 HAUS5O94927 633 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 UGT2B7P16662 529 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 PGAM1P18669 254 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 PEBP1P30086 187 aaKnown RBP14.54□□□□□ -0.08
VPS39-210ENST00000568357 SLC1A2P43004 574 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 MAP7Q14244 749 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 GBX1Q14549 363 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 MORF4L2Q15014 288 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 BBS9Q3SYG4 887 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 HP1BP3Q5SSJ5 553 aaPredicted RBP14.54□□□□□ -0.08
VPS39-210ENST00000568357 PLEKHS1Q5SXH7 462 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 HIBCHQ6NVY1 386 aaPredicted RBP14.54□□□□□ -0.08
VPS39-210ENST00000568357 ZNF549Q6P9A3 640 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 SPESP1Q6UW49 350 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 C6orf15Q6UXA7 325 aaPredicted RBP14.54□□□□□ -0.08
VPS39-210ENST00000568357 SYT10Q6XYQ8 523 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 TRIM73Q86UV7 250 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 BPHLQ86WA6 291 aaPredicted RBP14.54□□□□□ -0.08
VPS39-210ENST00000568357 LINC01555Q8NAE3 123 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.54□□□□□ -0.08
VPS39-210ENST00000568357 SLC30A3Q99726 388 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 SLC12A9Q9BXP2 914 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 TRIM31Q9BZY9 425 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 PLAC1Q9HBJ0 212 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 LATS2Q9NRM7 1088 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 SOHLH2Q9NX45 425 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 IL17BQ9UHF5 180 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 LNPEPQ9UIQ6 1025 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 FBXO5Q9UKT4 447 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 VPS9D1Q9Y2B5 631 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 MED16Q9Y2X0 877 aa14.54□□□□□ -0.08
VPS39-210ENST00000568357 KRT87PA6NCN2 255 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 C1orf105O95561 183 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 NTRK1P04629 796 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 ERVK-10P10266 1014 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 F8A1P23610 371 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 PKLRP30613 574 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 CASQ1P31415 396 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 CLCN7P51798 805 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 ITGA8P53708 1063 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 MPP1Q00013 466 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 ABHD18Q0P651 414 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 CRYMQ14894 314 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 ZIC1Q15915 447 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 CCSMST1Q4G0I0 132 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 ACSBG2Q5FVE4 666 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 TMTC4Q5T4D3 741 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 PRAMEF17Q5VTA0 474 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 DCUN1D3Q8IWE4 304 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 FAM20CQ8IXL6 584 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 C2orf73Q8N5S3 287 aaPredicted RBP14.53□□□□□ -0.08
VPS39-210ENST00000568357 ZBTB2Q8N680 514 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 ESX1Q8N693 406 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 SPATA4Q8NEY3 305 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 GSDMBQ8TAX9 411 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 SKA2Q8WVK7 121 aaPredicted RBP14.53□□□□□ -0.08
VPS39-210ENST00000568357 IL17FQ96PD4 163 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 FCRL4Q96PJ5 515 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 WDR83Q9BRX9 315 aaKnown RBP14.53□□□□□ -0.08
VPS39-210ENST00000568357 AKIRIN1Q9H9L7 192 aaPredicted RBP14.53□□□□□ -0.08
VPS39-210ENST00000568357 GPN2Q9H9Y4 310 aaPredicted RBP14.53□□□□□ -0.08
VPS39-210ENST00000568357 FAM60AQ9NP50 221 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 IARS2Q9NSE4 1012 aaKnown RBP14.53□□□□□ -0.08
VPS39-210ENST00000568357 TSR3Q9UJK0 312 aaKnown RBP14.53□□□□□ -0.08
VPS39-210ENST00000568357 SNX24Q9Y343 169 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 PIKFYVEQ9Y2I7 2098 aa14.53□□□□□ -0.08
VPS39-210ENST00000568357 ISM1B1AKI9 464 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 SEC31AO94979 1220 aaKnown RBP14.52□□□□□ -0.09
VPS39-210ENST00000568357 MATN4O95460 622 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 RPN2P04844 631 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 CD9P21926 228 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 GABRB3P28472 473 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 ELK3P41970 407 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 STAT5AP42229 794 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 RPL21P46778 160 aaKnown RBP14.52□□□□□ -0.09
VPS39-210ENST00000568357 RAB28P51157 221 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 COLEC12Q5KU26 742 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 CYB5D1Q6P9G0 228 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 CNSTQ6PJW8 725 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 CDHR3Q6ZTQ4 885 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 PRICKLE2Q7Z3G6 844 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 KCNMB4Q86W47 210 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 LMNTD2Q8IXW0 634 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 PDIK1LQ8N165 341 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 ZSCAN1Q8NBB4 408 aa14.52□□□□□ -0.09
VPS39-210ENST00000568357 SLC38A9Q8NBW4 561 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms