RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 PMS2CLQ68D20 193 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 AGTRAPQ6RW13 159 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 LRRC70Q7Z2Q7 622 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 SPATS2Q86XZ4 545 aaKnown RBP29.74■■■□□ 2.35
CTCF-203ENST00000566078 NRROSQ86YC3 692 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 AGAP11Q8TF27 550 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 TNFRSF12AQ9NP84 129 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 ATXN2Q99700 1313 aaKnown RBP29.73■■■□□ 2.35
CTCF-203ENST00000566078 MLYCDO95822 493 aa29.73■■■□□ 2.35
CTCF-203ENST00000566078 ITPKAP23677 461 aa29.73■■■□□ 2.35
CTCF-203ENST00000566078 HALP42357 657 aa29.73■■■□□ 2.35
CTCF-203ENST00000566078 PTCHD3Q3KNS1 767 aa29.73■■■□□ 2.35
CTCF-203ENST00000566078 CACNA2D3Q8IZS8 1091 aa29.73■■■□□ 2.35
CTCF-203ENST00000566078 CCDC197Q8NCU1 140 aa29.73■■■□□ 2.35
CTCF-203ENST00000566078 C10orf82Q8WW14 230 aa29.73■■■□□ 2.35
CTCF-203ENST00000566078 RAD51AP1Q96B01 352 aa29.73■■■□□ 2.35
CTCF-203ENST00000566078 PYCR2Q96C36 320 aa29.73■■■□□ 2.35
CTCF-203ENST00000566078 FERD3LQ96RJ6 166 aa29.73■■■□□ 2.35
CTCF-203ENST00000566078 GSDMCQ9BYG8 508 aa29.73■■■□□ 2.35
CTCF-203ENST00000566078 SCHIP1Q9P0W5 487 aaPredicted RBP29.73■■■□□ 2.35
CTCF-203ENST00000566078 APOBEC3BQ9UH17 382 aaKnown RBP29.73■■■□□ 2.35
CTCF-203ENST00000566078 USH1CQ9Y6N9 552 aa29.73■■■□□ 2.35
CTCF-203ENST00000566078 A0A0G2JND7 137 aa29.72■■■□□ 2.35
CTCF-203ENST00000566078 OR52A4PA6NMU1 304 aa29.72■■■□□ 2.35
CTCF-203ENST00000566078 BCAT2O15382 392 aaPredicted RBP29.72■■■□□ 2.35
CTCF-203ENST00000566078 WDR47O94967 919 aa29.72■■■□□ 2.35
CTCF-203ENST00000566078 SH3BP2P78314 561 aa29.72■■■□□ 2.35
CTCF-203ENST00000566078 TBC1D21Q8IYX1 336 aa29.72■■■□□ 2.35
CTCF-203ENST00000566078 GPBAR1Q8TDU6 330 aa29.72■■■□□ 2.35
CTCF-203ENST00000566078 SLC32A1Q9H598 525 aa29.72■■■□□ 2.35
CTCF-203ENST00000566078 NOL11Q9H8H0 719 aaKnown RBP29.72■■■□□ 2.35
CTCF-203ENST00000566078 PLAGL1Q9UM63 463 aa29.72■■■□□ 2.35
CTCF-203ENST00000566078 FIS1Q9Y3D6 152 aa29.72■■■□□ 2.35
CTCF-203ENST00000566078 SDK1Q7Z5N4 2213 aa29.72■■■□□ 2.35
CTCF-203ENST00000566078 A0A0C4DFX4 3053 aa29.72■■■□□ 2.35
CTCF-203ENST00000566078 KNL1Q8NG31 2342 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 TMEM233B4DJY2 109 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 EML2O95834 649 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 CTSEP14091 401 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 JUNDP17535 347 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 AFF3P51826 1226 aaKnown RBP29.71■■■□□ 2.35
CTCF-203ENST00000566078 AQP5P55064 265 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 NXPH1P58417 271 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 PRKG2Q13237 762 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 RPE65Q16518 533 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 PPFIBP2Q8ND30 876 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 ZNF480Q8WV37 535 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 MED8Q96G25 268 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 GPR37L1O60883 481 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 PIK3CGP48736 1102 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 CSNK1EP49674 416 aaKnown RBP29.71■■■□□ 2.35
CTCF-203ENST00000566078 HK2P52789 917 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 GRB7Q14451 532 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 ABRAXAS1Q6UWZ7 409 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 WASH2PQ6VEQ5 465 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 BMP8AQ7Z5Y6 402 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 SNX31Q8N9S9 440 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 OR52B6Q8NGF0 335 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 ZNF382Q96SR6 550 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 SIKE1Q9BRV8 207 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 TMEM120AQ9BXJ8 343 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 IPPKQ9H8X2 491 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 KCNK13Q9HB14 408 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 WASH6PQ9NQA3 447 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 PCOLCE2Q9UKZ9 415 aa29.71■■■□□ 2.35
CTCF-203ENST00000566078 A0A1B0GTL3 188 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 VILLO15195 856 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 CELA2BP08218 269 aaPredicted RBP29.7■■■□□ 2.34
CTCF-203ENST00000566078 MTHFD1P11586 935 aaKnown RBP29.7■■■□□ 2.34
CTCF-203ENST00000566078 EPB42P16452 691 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 ARL1P40616 181 aaPredicted RBP29.7■■■□□ 2.34
CTCF-203ENST00000566078 ARFIP2P53365 341 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 C21orf59P57076 290 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 NAE1Q13564 534 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 MAVSQ7Z434 540 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 SYVN1Q86TM6 617 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 SYTL1Q8IYJ3 562 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 AFAP1L2Q8N4X5 818 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 SKA1Q96BD8 255 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 STK38LQ9Y2H1 464 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 ARL2BPQ9Y2Y0 163 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 PI4KAP42356 2102 aa29.7■■■□□ 2.34
CTCF-203ENST00000566078 OR7A17O14581 309 aa29.69■■■□□ 2.34
CTCF-203ENST00000566078 GIPC1O14908 333 aa29.69■■■□□ 2.34
CTCF-203ENST00000566078 HRO43593 1189 aa29.69■■■□□ 2.34
CTCF-203ENST00000566078 CSF2P04141 144 aa29.69■■■□□ 2.34
CTCF-203ENST00000566078 NME1P15531 152 aaKnown RBP29.69■■■□□ 2.34
CTCF-203ENST00000566078 PRDX3P30048 256 aaKnown RBP29.69■■■□□ 2.34
CTCF-203ENST00000566078 KRT33BQ14525 404 aa29.69■■■□□ 2.34
CTCF-203ENST00000566078 GPRIN3Q6ZVF9 776 aa29.69■■■□□ 2.34
CTCF-203ENST00000566078 ATP6V1E2Q96A05 226 aa29.69■■■□□ 2.34
CTCF-203ENST00000566078 LRRC61Q9BV99 259 aa29.69■■■□□ 2.34
CTCF-203ENST00000566078 DNAJC11Q9NVH1 559 aa29.69■■■□□ 2.34
CTCF-203ENST00000566078 KCNK4Q9NYG8 393 aa29.69■■■□□ 2.34
CTCF-203ENST00000566078 TRAF6Q9Y4K3 522 aa29.69■■■□□ 2.34
CTCF-203ENST00000566078 HEBP2Q9Y5Z4 205 aa29.69■■■□□ 2.34
CTCF-203ENST00000566078 A6NCN8 305 aa29.68■■■□□ 2.34
CTCF-203ENST00000566078 ALOX15P16050 662 aaPredicted RBP29.68■■■□□ 2.34
CTCF-203ENST00000566078 CCNG1P51959 295 aa29.68■■■□□ 2.34
CTCF-203ENST00000566078 PNLIPRP1P54315 467 aa29.68■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms