RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ACADLP28330 430 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 GABRB3P28472 473 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 ILF2Q12905 390 aaKnown RBP16.76■□□□□ 0.27
CLN3-217ENST00000565354 EIF3IQ13347 325 aaKnown RBP16.76■□□□□ 0.27
CLN3-217ENST00000565354 PDAP1Q13442 181 aaKnown RBP16.76■□□□□ 0.27
CLN3-217ENST00000565354 TGIF1Q15583 401 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 KYNUQ16719 465 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 SNAP47Q5SQN1 464 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 RBM20Q5T481 1227 aaKnown RBP16.76■□□□□ 0.27
CLN3-217ENST00000565354 OOSP2Q86WS3 158 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 PLXDC1Q8IUK5 500 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 FBXO39Q8N4B4 442 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 PPM1NQ8N819 430 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 OR5AR1Q8NGP9 310 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 LCN9Q8WX39 176 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 INPP5DQ92835 1189 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 CDC42EP4Q9H3Q1 356 aaKnown RBP16.76■□□□□ 0.27
CLN3-217ENST00000565354 LATS2Q9NRM7 1088 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 NINJ2Q9NZG7 142 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 KLHL42Q9P2K6 505 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 GALPQ9UBC7 116 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 POLG2Q9UHN1 485 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 SLC24A2Q9UI40 661 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 CDYLQ9Y232 598 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 PIAS1O75925 651 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 FAM87AP0C7U9 286 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 ATP5DP30049 168 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 ECHS1P30084 290 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 SKIV2L2P42285 1042 aaKnown RBP16.75■□□□□ 0.27
CLN3-217ENST00000565354 RGS4P49798 205 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 CLCN7P51798 805 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 SLC12A2P55011 1212 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 PRKAA1Q13131 559 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 SRSF6Q13247 344 aaKnown RBP16.75■□□□□ 0.27
CLN3-217ENST00000565354 KBTBD12Q3ZCT8 623 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 HECTD2Q5U5R9 776 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 IRGCQ6NXR0 463 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 TMEM71Q6P5X7 295 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 UNC5DQ6UXZ4 953 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 CYS1Q717R9 158 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 RAB11FIP2Q7L804 512 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 B3GNT8Q7Z7M8 397 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 OR4E2Q8NGC2 313 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 OR4D9Q8NGE8 314 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 OR52E1Q8NGJ3 308 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 OR5K2Q8NHB8 316 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 CPNE1Q99829 537 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 SRMSQ9H3Y6 488 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 SMYD2Q9NRG4 433 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 KLHL3Q9UH77 587 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 DHRS7Q9Y394 339 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 PSAT1Q9Y617 370 aa16.75■□□□□ 0.27
CLN3-217ENST00000565354 SPTAN1Q13813 2472 aaKnown RBP16.75■□□□□ 0.27
CLN3-217ENST00000565354 FAM95CA0A1B0GW59 222 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 FAM159BA6NKW6 160 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 ACSL3O95573 720 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 NTRK1P04629 796 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 CBSLP0DN79 551 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 ENO3P13929 434 aaPredicted RBP16.74■□□□□ 0.27
CLN3-217ENST00000565354 MCM3P25205 808 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 MPSTP25325 297 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 CSF2RBP32927 897 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 CBSP35520 551 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 GP5P40197 560 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 CAPZBP47756 277 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 SQSTM1Q13501 440 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 NAB1Q13506 487 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 KLHL38Q2WGJ6 581 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 ACSBG2Q5FVE4 666 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 WDR74Q6RFH5 385 aaPredicted RBP16.74■□□□□ 0.27
CLN3-217ENST00000565354 ZC3HC1Q86WB0 502 aaKnown RBP16.74■□□□□ 0.27
CLN3-217ENST00000565354 RELL1Q8IUW5 271 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 DCUN1D3Q8IWE4 304 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 CPNE9Q8IYJ1 553 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 RAB42Q8N4Z0 105 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 CD200R1Q8TD46 325 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 MAGEC3Q8TD91 643 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 RSC1A1Q92681 617 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 VPS39Q96JC1 886 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 TGM7Q96PF1 710 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 SEMA6CQ9H3T2 930 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 RHOJQ9H4E5 214 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 HRASLS2Q9NWW9 162 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 VWA7Q9Y334 891 aa16.74■□□□□ 0.27
CLN3-217ENST00000565354 USP9YO00507 2555 aaPredicted RBP16.74■□□□□ 0.27
CLN3-217ENST00000565354 RELNP78509 3460 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 OR6C74A6NCV1 312 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 CXorf49A8MYA2 514 aaPredicted RBP16.73■□□□□ 0.27
CLN3-217ENST00000565354 AGRPO00253 132 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 CAPN5O15484 640 aaPredicted RBP16.73■□□□□ 0.27
CLN3-217ENST00000565354 MPC1LP0DKB6 136 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 LIPCP11150 499 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 CCKBRP32239 447 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 SHMT2P34897 504 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 CCNFP41002 786 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 BDKRB1P46663 353 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 LIMK2P53671 638 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 CDKN2DP55273 166 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 UAP1Q16222 522 aaPredicted RBP16.73■□□□□ 0.27
CLN3-217ENST00000565354 LRRC8EQ6NSJ5 796 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms