RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 COL6A2P12110 1019 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 KRT15P19012 456 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 INSM1Q01101 510 aaPredicted RBP9.78□□□□□ -0.84
USP3-216ENST00000559873 TRA2AQ13595 282 aaKnown RBP eCLIP9.78□□□□□ -0.84
USP3-216ENST00000559873 CSHL1Q14406 222 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 NAA25Q14CX7 972 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 TSNAXIP1Q2TAA8 658 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.78□□□□□ -0.84
USP3-216ENST00000559873 IRGCQ6NXR0 463 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 TMEM71Q6P5X7 295 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 FBXO38Q6PIJ6 1188 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 SLCO6A1Q86UG4 719 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 LCA5Q86VQ0 697 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 CARFQ8N187 725 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 CACTIN-AS1Q8N1I8 211 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 OR4E2Q8NGC2 313 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 OR4D9Q8NGE8 314 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 OR9A1PQ8NGU1 263 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 OR2L8Q8NGY9 312 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 ACMSDQ8TDX5 336 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 NCSTNQ92542 709 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 RSC1A1Q92681 617 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 CCDC138Q96M89 665 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 SLC12A9Q9BXP2 914 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 VPS11Q9H270 941 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 HRASLS2Q9NWW9 162 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 EPHA6Q9UF33 1036 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 TBK1Q9UHD2 729 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 ICKQ9UPZ9 632 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 RP1P56715 2156 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 CACNA1AO00555 2505 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 PIPSLA2A3N6 862 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 OR6C74A6NCV1 312 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 NPEPPSL1A6NEC2 478 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 TLCD2A6NGC4 264 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 SYCE1LA8MT33 242 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 GFYI3L273 518 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 TOX3O15405 576 aaPredicted RBP9.77□□□□□ -0.85
USP3-216ENST00000559873 MAP3K7O43318 606 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 KLHL2O95198 593 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 FKBP9O95302 570 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 WISP3O95389 354 aaPredicted RBP9.77□□□□□ -0.85
USP3-216ENST00000559873 MT-CO3P00414 261 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 MT-ND3P03897 115 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 SHBGP04278 402 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 ANXA5P08758 320 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 JUPP14923 745 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 CD1DP15813 335 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 TYRP1P17643 537 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 CCND1P24385 295 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 CD1CP29017 333 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 CCKBRP32239 447 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 MAGEA12P43365 314 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 SLCO1A2P46721 670 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 INHBCP55103 352 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 EIF3IQ13347 325 aaKnown RBP9.77□□□□□ -0.85
USP3-216ENST00000559873 KIR2DS3Q14952 304 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 KRT71Q3SY84 523 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 CDCP2Q5VXM1 449 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 NKAIN2Q5VXU1 208 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 CYB5D1Q6P9G0 228 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 TMEM207Q6UWW9 146 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 CYHR1Q6ZMK1 362 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 TIFABQ6ZNK6 161 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 SYTL1Q8IYJ3 562 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 TCAIMQ8N3R3 496 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 HMGCLL1Q8TB92 370 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 STAG3L4Q8TBR4 150 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 EPS8L3Q8TE67 593 aaKnown RBP9.77□□□□□ -0.85
USP3-216ENST00000559873 SMPDL3AQ92484 453 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 PKNOX2Q96KN3 472 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 UBXN10Q96LJ8 280 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 RDH14Q9HBH5 336 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 PCMTD2Q9NV79 361 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 ARL15Q9NXU5 204 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 ATXN7L1Q9ULK2 861 aaPredicted RBP9.77□□□□□ -0.85
USP3-216ENST00000559873 PLAGL1Q9UM63 463 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 PLAAQ9Y263 795 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 OARD1Q9Y530 152 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 CFAP54Q96N23 3096 aa9.77□□□□□ -0.85
USP3-216ENST00000559873 PRAMEF33A0A0G2JMD5 474 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 TLDC2A0PJX2 215 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 HMX2A2RU54 273 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 GOLGA6L10A6NI86 522 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 HGSO14964 777 aaPredicted RBP9.76□□□□□ -0.85
USP3-216ENST00000559873 CAPN5O15484 640 aaPredicted RBP9.76□□□□□ -0.85
USP3-216ENST00000559873 KERAO60938 352 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 CSO75390 466 aaKnown RBP9.76□□□□□ -0.85
USP3-216ENST00000559873 RASSF9O75901 435 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 IPO13O94829 963 aaKnown RBP9.76□□□□□ -0.85
USP3-216ENST00000559873 CCNDBP1O95273 360 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 C9P02748 559 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 CHRM5P08912 532 aaPredicted RBP9.76□□□□□ -0.85
USP3-216ENST00000559873 RBP1P09455 135 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 ANKRD34CP0C6C1 535 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 MYZAPP0CAP1 466 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 THRAP10827 490 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 POLR2CP19387 275 aaPredicted RBP9.76□□□□□ -0.85
USP3-216ENST00000559873 TFEBP19484 476 aa9.76□□□□□ -0.85
USP3-216ENST00000559873 CDH3P22223 829 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms