RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 KCNK4Q9NYG8 393 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 EURLQ9NYK6 297 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 OR6C2Q9NZP2 312 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 TSR3Q9UJK0 312 aaKnown RBP8.98□□□□□ -0.97
LDLR-210ENST00000559340 MID2Q9UJV3 735 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 GRID1Q9ULK0 1009 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 RNF112Q9ULX5 631 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 APOBEC2Q9Y235 224 aaKnown RBP8.98□□□□□ -0.97
LDLR-210ENST00000559340 OARD1Q9Y530 152 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 ACTL7BQ9Y614 415 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 RNF215Q9Y6U7 377 aa8.98□□□□□ -0.97
LDLR-210ENST00000559340 MDC1Q14676 2089 aaKnown RBP8.98□□□□□ -0.97
LDLR-210ENST00000559340 BPTFQ12830 3046 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 TMX2-CTNND1H3BSU7 103 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 MYO1CO00159 1063 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 MAP3K7O43318 606 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 DUX1O43812 170 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 CBFA2T3O75081 653 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 SMIM24O75264 130 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 UBXN7O94888 489 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 FKBP9O95302 570 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 TSPAN12O95859 305 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 PROS1P07225 676 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 ADRB1P08588 477 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 TFEBP19484 476 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 TAC1P20366 129 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 CCND1P24385 295 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 ALDH4A1P30038 563 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 CRHR1P34998 444 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 HNMTP50135 292 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 CSRP3P50461 194 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 RAB28P51157 221 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 SLC18A2Q05940 514 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 PRKG2Q13237 762 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 GPR18Q14330 331 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 NR1D2Q14995 579 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 CCDC153Q494R4 210 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 PPM1JQ5JR12 505 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 AGBL2Q5U5Z8 902 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 ANKS6Q68DC2 871 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 TRABD2AQ86V40 505 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 AMIGO1Q86WK6 493 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 PLXDC1Q8IUK5 500 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 OR52E1Q8NGJ3 308 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 BAHD1Q8TBE0 780 aaPredicted RBP8.97□□□□□ -0.97
LDLR-210ENST00000559340 MZB1Q8WU39 189 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 KCTD4Q8WVF5 259 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 ANKRD49Q8WVL7 239 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 CCDC74AQ96AQ1 378 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 EGFL8Q99944 293 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 MRPL57Q9BQC6 102 aaKnown RBP8.97□□□□□ -0.97
LDLR-210ENST00000559340 HGH1Q9BTY7 390 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 ZMYND15Q9H091 742 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 PCBD2Q9H0N5 130 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 LRRN3Q9H3W5 708 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 CAAP1Q9H8G2 361 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 CNOT10Q9H9A5 744 aaKnown RBP8.97□□□□□ -0.97
LDLR-210ENST00000559340 TMBIM4Q9HC24 238 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 PCMTD2Q9NV79 361 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 ARL15Q9NXU5 204 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 NUDT4Q9NZJ9 180 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 ENTPD2Q9Y5L3 495 aa8.97□□□□□ -0.97
LDLR-210ENST00000559340 CACNA1BQ00975 2339 aa8.96□□□□□ -0.97
LDLR-210ENST00000559340 A0A1W2PPM1 405 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 DCDC2BA2VCK2 349 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 NPEPPSL1A6NEC2 478 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 ARHGEF33A8MVX0 844 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 GOLGA8RI6L899 631 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 CDC7O00311 574 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 KERAO60938 352 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 RFPL3O75679 317 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 CCNDBP1O95273 360 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 TPBGLP0DKB5 382 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 KRT4P19013 534 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 BDKRB1P46663 353 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 SQSTM1Q13501 440 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 NAA25Q14CX7 972 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 TSNQ15631 228 aaKnown RBP8.96□□□□□ -0.98
LDLR-210ENST00000559340 SULT1C3Q6IMI6 304 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 DUS1LQ6P1R4 473 aaKnown RBP8.96□□□□□ -0.98
LDLR-210ENST00000559340 GUSBP11Q6P575 273 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 RAB44Q7Z6P3 723 aaPredicted RBP8.96□□□□□ -0.98
LDLR-210ENST00000559340 CLEC14AQ86T13 490 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 ISCA2Q86U28 154 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 RASGRP3Q8IV61 690 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 SRRM1Q8IYB3 904 aaKnown RBP8.96□□□□□ -0.98
LDLR-210ENST00000559340 SYTL1Q8IYJ3 562 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 CENPLQ8N0S6 344 aaPredicted RBP8.96□□□□□ -0.98
LDLR-210ENST00000559340 CYP4X1Q8N118 509 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 Q8N9G6 341 aaPredicted RBP8.96□□□□□ -0.98
LDLR-210ENST00000559340 DEFB124Q8NES8 71 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 OR4E2Q8NGC2 313 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 OR2L8Q8NGY9 312 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 HMGCLL1Q8TB92 370 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 SREK1Q8WXA9 508 aaKnown RBP8.96□□□□□ -0.98
LDLR-210ENST00000559340 SMPDL3AQ92484 453 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 FBXL8Q96CD0 374 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 CCDC126Q96EE4 140 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 ZDHHC12Q96GR4 267 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 CD180Q99467 661 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms