RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FAM60AQ9NP50 221 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 LHX9Q9NQ69 397 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 INTS10Q9NVR2 710 aaKnown RBP14.3□□□□□ -0.12
USP28-204ENST00000537642 GALPQ9UBC7 116 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 CIDEBQ9UHD4 219 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 PADI1Q9ULC6 663 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 NFS1Q9Y697 457 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 SAR1BQ9Y6B6 198 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 A0A0J9YY10 115 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 TMEM150CB9EJG8 249 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 H3BMM5 538 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 KDM1AO60341 852 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 CPNE3O75131 537 aaKnown RBP14.29□□□□□ -0.12
USP28-204ENST00000537642 BANF1O75531 89 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 PRKAR1AP10644 381 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 PKMP14618 531 aaKnown RBP14.29□□□□□ -0.12
USP28-204ENST00000537642 OAS2P29728 719 aaKnown RBP14.29□□□□□ -0.12
USP28-204ENST00000537642 RAB28P51157 221 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 CDC20Q12834 499 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 CTBP1Q13363 440 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 THOC5Q13769 683 aaKnown RBP14.29□□□□□ -0.12
USP28-204ENST00000537642 GBX1Q14549 363 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 KIR2DS3Q14952 304 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 ZIC1Q15915 447 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 LONRF1Q17RB8 773 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 ATP1A1-AS1Q5TC04 95 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 HOOK3Q86VS8 718 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 KLHL7Q8IXQ5 586 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 C19orf47Q8N9M1 422 aaKnown RBP14.29□□□□□ -0.12
USP28-204ENST00000537642 LINC01555Q8NAE3 123 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 SLC38A9Q8NBW4 561 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 GSDMBQ8TAX9 411 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 CT55Q8WUE5 264 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 MED8Q96G25 268 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 ARHGAP9Q9BRR9 750 aa14.29□□□□□ -0.12
USP28-204ENST00000537642 FBXO6Q9NRD1 293 aaPredicted RBP14.29□□□□□ -0.12
USP28-204ENST00000537642 RUVBL2Q9Y230 463 aaKnown RBP14.29□□□□□ -0.12
USP28-204ENST00000537642 CTAGE9A4FU28 777 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 ISM1B1AKI9 464 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 MAP3K7O43318 606 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 C1orf105O95561 183 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 FAM87AP0C7U9 286 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 TCN2P20062 427 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 CHRM3P20309 590 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 CD9P21926 228 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 SLC1A2P43004 574 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 BDKRB1P46663 353 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 DHX9Q08211 1270 aaKnown RBP14.28□□□□□ -0.12
USP28-204ENST00000537642 C19orf57Q0VDD7 668 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 GPS2Q13227 327 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 DNASE1L3Q13609 305 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 SLC5A12Q1EHB4 618 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 CCSMST1Q4G0I0 132 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 MSS51Q4VC12 460 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 CRTC2Q53ET0 693 aaPredicted RBP14.28□□□□□ -0.12
USP28-204ENST00000537642 IZUMO3Q5VZ72 239 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 FAM199XQ6PEV8 388 aaPredicted RBP14.28□□□□□ -0.12
USP28-204ENST00000537642 BORAQ6PGQ7 559 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 PCGF5Q86SE9 256 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 SPNS2Q8IVW8 549 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 FAM20CQ8IXL6 584 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 C2orf73Q8N5S3 287 aaPredicted RBP14.28□□□□□ -0.12
USP28-204ENST00000537642 OR2L8Q8NGY9 312 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 SKA2Q8WVK7 121 aaPredicted RBP14.28□□□□□ -0.12
USP28-204ENST00000537642 RUFY1Q96T51 708 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 C20orf96Q9NUD7 363 aaPredicted RBP14.28□□□□□ -0.12
USP28-204ENST00000537642 TSR3Q9UJK0 312 aaKnown RBP14.28□□□□□ -0.12
USP28-204ENST00000537642 VPS9D1Q9Y2B5 631 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 PCDHB3Q9Y5E6 796 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 PCDHGA6Q9Y5G7 932 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 FAM169AQ9Y6X4 670 aa14.28□□□□□ -0.12
USP28-204ENST00000537642 FER1L5A0AVI2 2057 aa14.27□□□□□ -0.12
USP28-204ENST00000537642 KRT87PA6NCN2 255 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 RASGRF2O14827 1237 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 HCRTR1O43613 425 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 KATNA1O75449 491 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 PGAM1P18669 254 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 ATP5DP30049 168 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 GABRA4P48169 554 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 CLCN7P51798 805 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 ITGA1P56199 1179 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 MC1RQ01726 317 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 CRYMQ14894 314 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 ACSBG2Q5FVE4 666 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 C16orf46Q6P387 395 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 ZNF549Q6P9A3 640 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 CNSTQ6PJW8 725 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 ZNF517Q6ZMY9 492 aaPredicted RBP14.27□□□□□ -0.13
USP28-204ENST00000537642 SYDE1Q6ZW31 735 aaPredicted RBP14.27□□□□□ -0.13
USP28-204ENST00000537642 TAX1BP1Q86VP1 789 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 IGDCC3Q8IVU1 814 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 ZBTB2Q8N680 514 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.27□□□□□ -0.13
USP28-204ENST00000537642 RAD51AP1Q96B01 352 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 TCTN2Q96GX1 697 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 LRFN5Q96NI6 719 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 RUNDC3BQ96NL0 473 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 CATSPER2Q96P56 530 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 SLC30A3Q99726 388 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 CHRNA10Q9GZZ6 450 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms