RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 GCNT1Q02742 428 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 EGR4Q05215 589 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 PRKAA1Q13131 559 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 HNF4GQ14541 408 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 RABEP1Q15276 862 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 MCMDC2Q4G0Z9 681 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 TAF1BQ53T94 588 aaPredicted RBP4.46□□□□□ -1.7
VPS13A-212ENST00000493341 OR6B2Q6IFH4 312 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 OLFML1Q6UWY5 402 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 Q6ZTK2 550 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 DGLUCYQ7Z3D6 616 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 COMMD2Q86X83 199 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 GBGT1Q8N5D6 347 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 OR52I2Q8NH67 350 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 THAP6Q8TBB0 222 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 OIT3Q8WWZ8 545 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 INPP5DQ92835 1189 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 THOC1Q96FV9 657 aaKnown RBP4.46□□□□□ -1.7
VPS13A-212ENST00000493341 QRFPRQ96P65 431 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 IWS1Q96ST2 819 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 KCNK16Q96T55 309 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 POLE3Q9NRF9 147 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 FAM118AQ9NWS6 357 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 AATFQ9NY61 560 aaKnown RBP eCLIP4.46□□□□□ -1.7
VPS13A-212ENST00000493341 NME7Q9Y5B8 376 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 SNX9Q9Y5X1 595 aa4.46□□□□□ -1.7
VPS13A-212ENST00000493341 A0A1W2PP11 408 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 CFAP73A6NFT4 308 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 TMEM178BH3BS89 294 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 NDUFB8O95169 186 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 CH25HO95992 272 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 C9P02748 559 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 GCP02774 474 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 CYP1A2P05177 515 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 UGT1A6P19224 532 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 CYP2A7P20853 494 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 PIK3R1P27986 724 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 HTR6P50406 440 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 PLCD1P51178 756 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 SEC61BP60468 96 aaKnown RBP4.45□□□□□ -1.7
VPS13A-212ENST00000493341 AKAP17AQ02040 695 aaKnown RBP4.45□□□□□ -1.7
VPS13A-212ENST00000493341 PRKCEQ02156 737 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 PDE7AQ13946 482 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 AMZ1Q400G9 498 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 KLC3Q6P597 504 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 BTNL8Q6UX41 500 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 ZNF517Q6ZMY9 492 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-212ENST00000493341 RBM43Q6ZSC3 357 aaKnown RBP4.45□□□□□ -1.7
VPS13A-212ENST00000493341 ADAMTSL2Q86TH1 951 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 AMIGO1Q86WK6 493 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 CHERPQ8IWX8 916 aaKnown RBP4.45□□□□□ -1.7
VPS13A-212ENST00000493341 ZNF34Q8IZ26 560 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 AMER3Q8N944 861 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 THAP8Q8NA92 274 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 WFIKKN2Q8TEU8 576 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 SLC38A5Q8WUX1 472 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 FAM46BQ96A09 425 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 SAMD8Q96LT4 415 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 NSMCE2Q96MF7 247 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 LRMDAQ9H2I8 198 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 FZD3Q9NPG1 666 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 NGBQ9NPG2 151 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 PNPLA3Q9NST1 481 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 TMED3Q9Y3Q3 217 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 JRKLQ9Y4A0 524 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 YIPF1Q9Y548 306 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-212ENST00000493341 SPIN1Q9Y657 262 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-212ENST00000493341 HEG1Q9ULI3 1381 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 NPHP3Q7Z494 1330 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 TRBV2A0A0J9YWF9 115 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 H0YIG0 161 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 TLR4O00206 839 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 AKR7A3O95154 331 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 PDGFBP01127 241 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-212ENST00000493341 STAG3L1P0CL83 205 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 ARSBP15848 533 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 JAK1P23458 1154 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 PTGER4P35408 488 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 CDX1P47902 265 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-212ENST00000493341 TRAF1Q13077 416 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 MTX1Q13505 466 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 PTGISQ16647 500 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 NEK5Q6P3R8 708 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 WDR88Q6ZMY6 472 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 MEX3BQ6ZN04 569 aaKnown RBP4.45□□□□□ -1.7
VPS13A-212ENST00000493341 Q6ZPA2 131 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 PPP1R42Q7Z4L9 355 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 EXOC3L1Q86VI1 746 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 CROCCP3Q8IVE0 287 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 KLHDC8AQ8IYD2 350 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 CFAP206Q8IYR0 622 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 RYBPQ8N488 228 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-212ENST00000493341 C7orf57Q8NEG2 295 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 LPAR1Q92633 364 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 CFAP36Q96G28 342 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 TXNDC15Q96J42 360 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 CSF3RQ99062 836 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 IDI2Q9BXS1 227 aa4.45□□□□□ -1.7
VPS13A-212ENST00000493341 SERINC1Q9NRX5 453 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 200.3 ms