RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 CDH15P55291 814 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 TPTEP56180 551 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 SP2Q02086 613 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 RANBP3LQ86VV4 465 aaPredicted RBP16.13■□□□□ 0.17
COL7A1-210ENST00000487017 MTERF1Q99551 399 aaKnown RBP16.13■□□□□ 0.17
COL7A1-210ENST00000487017 A0A1W2PRG6 482 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 FABP12A6NFH5 140 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 CAPN15O75808 1086 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 C8BP07358 591 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 VARSP26640 1264 aaKnown RBP16.13■□□□□ 0.17
COL7A1-210ENST00000487017 CRTC2Q53ET0 693 aaPredicted RBP16.13■□□□□ 0.17
COL7A1-210ENST00000487017 SFT2D3Q587I9 215 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 ZNF311Q5JNZ3 666 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 TP53INP1Q96A56 240 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 RPL36Q9Y3U8 105 aaKnown RBP16.13■□□□□ 0.17
COL7A1-210ENST00000487017 SIGLEC1Q9BZZ2 1709 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 DLDP09622 509 aaKnown RBP16.12■□□□□ 0.17
COL7A1-210ENST00000487017 FAM163BP0C2L3 166 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 GJA8P48165 433 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 GSK3BP49841 420 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 CLCN4P51793 760 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 AP3S2P59780 193 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 SCARB2Q14108 478 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 GPR33Q49SQ1 333 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 ERMP1Q7Z2K6 904 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 MINDY3Q9H8M7 445 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 TBC1D17Q9HA65 648 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 SNTG1Q9NSN8 517 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 FBXW2Q9UKT8 454 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 NOS1APO75052 506 aaPredicted RBP16.12■□□□□ 0.17
COL7A1-210ENST00000487017 AKT2P31751 481 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 KHKP50053 298 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 KLHL35Q6PF15 583 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 CADM2Q8N3J6 435 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 PQLC3Q8N755 202 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 SIGLEC10Q96LC7 697 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 PCBD2Q9H0N5 130 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 TFPIP10646 304 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 UGT1A6P19224 532 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 UGT1A1P22309 533 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 UGT1A4P22310 534 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 UGT1A3P35503 534 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 ZNF280AP59817 542 aaPredicted RBP16.12■□□□□ 0.17
COL7A1-210ENST00000487017 HMGCS1Q01581 520 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 IGDCC3Q8IVU1 814 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 STON2Q8WXE9 905 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 PMM1Q92871 262 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 CDADC1Q9BWV3 514 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 PFDN2Q9UHV9 154 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.12■□□□□ 0.17
COL7A1-210ENST00000487017 FAM172BPA6NC97 362 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 PCDH7O60245 1069 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 ELNP15502 786 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 GALNT13Q8IUC8 556 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 OR10H5Q8NGA6 315 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 CACNG4Q9UBN1 327 aa16.12■□□□□ 0.17
COL7A1-210ENST00000487017 PPEF2O14830 753 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 ORC5O43913 435 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 TPST2O60704 377 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 TARDBPQ13148 414 aaKnown RBP eCLIP16.11■□□□□ 0.17
COL7A1-210ENST00000487017 HFE2Q6ZVN8 426 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 CCDC36Q8IYA8 594 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 CPA6Q8N4T0 437 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 KBTBD7Q8WVZ9 684 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 RPL10LQ96L21 214 aaKnown RBP16.11■□□□□ 0.17
COL7A1-210ENST00000487017 CEP295NLQ96MC4 621 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 ANKRA2Q9H9E1 313 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 PRKD3O94806 890 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 NFATC1O95644 943 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 RBM20Q5T481 1227 aaKnown RBP16.11■□□□□ 0.17
COL7A1-210ENST00000487017 C9orf43Q8TAL5 461 aaPredicted RBP16.11■□□□□ 0.17
COL7A1-210ENST00000487017 BORCS6Q96GS4 357 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 PCP4L1A6NKN8 68 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 XKRYO14609 159 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 APODP05090 189 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 CLUP10909 449 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 ALDH3A2P51648 485 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 AKR1D1P51857 326 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 GSCP56915 257 aaPredicted RBP16.11■□□□□ 0.17
COL7A1-210ENST00000487017 STXBP1P61764 594 aaKnown RBP16.11■□□□□ 0.17
COL7A1-210ENST00000487017 PIM3Q86V86 326 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 OXR1Q8N573 874 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 ZBED6CLQ96FA7 236 aaPredicted RBP16.11■□□□□ 0.17
COL7A1-210ENST00000487017 PEBP4Q96S96 227 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 TTC24A2A3L6 582 aaPredicted RBP16.11■□□□□ 0.17
COL7A1-210ENST00000487017 ARHGAP1Q07960 439 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 GALNT2Q10471 571 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 BNIP3Q12983 259 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 TMEM44Q2T9K0 475 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 FAM91A1Q658Y4 838 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 SLC2A7Q6PXP3 512 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 FBXO22Q8NEZ5 403 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 TSEN15Q8WW01 171 aaKnown RBP16.11■□□□□ 0.17
COL7A1-210ENST00000487017 SIRPGQ9P1W8 387 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 MAGEB3O15480 346 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 PRODHO43272 600 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 TUBA4AP68366 448 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 UBXN11Q5T124 520 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 FBXL22Q6P050 247 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 GFM1Q96RP9 751 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms