RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 ASXL3Q9C0F0 2248 aa8.04□□□□□ -1.12
SF3A1-208ENST00000485618 FREM2Q5SZK8 3169 aa8.04□□□□□ -1.12
SF3A1-208ENST00000485618 UNC79Q9P2D8 2635 aa8.04□□□□□ -1.12
SF3A1-208ENST00000485618 RP1P56715 2156 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 PIPSLA2A3N6 862 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 GSAPA4D1B5 854 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 FAM149AA5PLN7 773 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 OR6C74A6NCV1 312 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 OR5K3A6NET4 321 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CXorf49A8MYA2 514 aaPredicted RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 D6RAR5 112 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 GFYI3L273 518 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 HGSO14964 777 aaPredicted RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CAPN5O15484 640 aaPredicted RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CSO75390 466 aaKnown RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 PSIP1O75475 530 aaKnown RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 RASSF9O75901 435 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CCNDBP1O95273 360 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 C1orf105O95561 183 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 SYF2O95926 243 aaKnown RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 S100BP04271 92 aaPredicted RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 MPOP05164 745 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 COL6A2P12110 1019 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CCND1P24385 295 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 RBMS1P29558 406 aaKnown RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 TYK2P29597 1187 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CCKBRP32239 447 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 MLLT3P42568 568 aaPredicted RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CAPZBP47756 277 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CDKN2DP55273 166 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 TAS2R39P59534 338 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 VSNL1P62760 191 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 TARDBPQ13148 414 aaKnown RBP eCLIP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 SLC29A2Q14542 456 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 GBX1Q14549 363 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 KIR2DS3Q14952 304 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 ISXQ2M1V0 245 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 PERM1Q5SV97 790 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 RBM20Q5T481 1227 aaKnown RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 TMTC4Q5T4D3 741 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CDCP2Q5VXM1 449 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 IRGCQ6NXR0 463 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 NAPRTQ6XQN6 538 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 FRA10AC1Q70Z53 315 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 UBE2R2Q712K3 238 aaPredicted RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 ADAMTSL2Q86TH1 951 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 LCA5Q86VQ0 697 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 BPHLQ86WA6 291 aaPredicted RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 KMT5CQ86Y97 462 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 TCAIMQ8N3R3 496 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 LILRA3Q8N6C8 439 aaPredicted RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 LRRN4CLQ8ND94 238 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 AGBL5Q8NDL9 886 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 OR5AR1Q8NGP9 310 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 OR9A1PQ8NGU1 263 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 LKAAEAR1Q8TD35 194 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 EEF1AKMT1Q8WVE0 214 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CAVIN3Q969G5 261 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 MRRFQ96E11 262 aaKnown RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CCDC97Q96F63 343 aaPredicted RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 PKNOX2Q96KN3 472 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 PAFAH2Q99487 392 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 TBC1D10AQ9BXI6 508 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 SLC12A9Q9BXP2 914 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 DERL2Q9GZP9 239 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 ARGLU1Q9NWB6 273 aaPredicted RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 DKK4Q9UBT3 224 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CTNNAL1Q9UBT7 734 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 RAB21Q9UL25 225 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 NOVA2Q9UNW9 492 aaKnown RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CDYLQ9Y232 598 aa8.03□□□□□ -1.12
SF3A1-208ENST00000485618 MTO1Q9Y2Z2 717 aaKnown RBP8.03□□□□□ -1.12
SF3A1-208ENST00000485618 CCDC187A0A096LP49 1063 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 SYCE1LA8MT33 242 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 ISM1B1AKI9 464 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 MYO1CO00159 1063 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 RASGRF2O14827 1237 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 CDH16O75309 829 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 MT-ND3P03897 115 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 FAM153BP0C7A2 387 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 JMJD7P0C870 316 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 CCDC166P0CW27 439 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 ZNF37AP17032 561 aaPredicted RBP8.02□□□□□ -1.13
SF3A1-208ENST00000485618 CDH3P22223 829 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 HRH2P25021 359 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 HNMTP50135 292 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 CYP4F3Q08477 520 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 FAM153CQ494X1 144 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 CDKL4Q5MAI5 379 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 CACHD1Q5VU97 1274 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 NKAIN2Q5VXU1 208 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 RAB11FIP2Q7L804 512 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 ZNF761Q86XN6 746 aaPredicted RBP8.02□□□□□ -1.13
SF3A1-208ENST00000485618 VRK3Q8IV63 474 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 FBXO39Q8N4B4 442 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 OR52E1Q8NGJ3 308 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 OR2L8Q8NGY9 312 aa8.02□□□□□ -1.13
SF3A1-208ENST00000485618 WDR36Q8NI36 951 aaKnown RBP8.02□□□□□ -1.13
SF3A1-208ENST00000485618 UHMK1Q8TAS1 419 aaKnown RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms