RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 NKD1Q969G9 470 aa18.33■□□□□ 0.52
PTCD3-210ENST00000473829 OR2A14Q96R47 310 aa18.33■□□□□ 0.52
PTCD3-210ENST00000473829 NDNQ99608 321 aa18.33■□□□□ 0.52
PTCD3-210ENST00000473829 ZPBPQ9BS86 351 aa18.33■□□□□ 0.52
PTCD3-210ENST00000473829 AARSD1Q9BTE6 412 aaKnown RBP18.33■□□□□ 0.52
PTCD3-210ENST00000473829 KLHL25Q9H0H3 589 aa18.33■□□□□ 0.52
PTCD3-210ENST00000473829 C1GALT1Q9NS00 363 aa18.33■□□□□ 0.52
PTCD3-210ENST00000473829 BTRCQ9Y297 605 aa18.33■□□□□ 0.52
PTCD3-210ENST00000473829 PCDHB11Q9Y5F2 797 aa18.33■□□□□ 0.52
PTCD3-210ENST00000473829 RAD1O60671 282 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 MATN4O95460 622 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 C1orf105O95561 183 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 DLGAP3O95886 979 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 RPN2P04844 631 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 FGF5P12034 268 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 WT1P19544 449 aaPredicted RBP18.32■□□□□ 0.52
PTCD3-210ENST00000473829 RAB28P51157 221 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 TMPRSS3P57727 454 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 CXADRP78310 365 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 HSD11B2P80365 405 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 TIAL1Q01085 375 aaKnown RBP eCLIP18.32■□□□□ 0.52
PTCD3-210ENST00000473829 CALCOCO2Q13137 446 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 CBLBQ13191 982 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 GPR19Q15760 415 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 RBM20Q5T481 1227 aaKnown RBP18.32■□□□□ 0.52
PTCD3-210ENST00000473829 SPESP1Q6UW49 350 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 C2orf73Q8N5S3 287 aaPredicted RBP18.32■□□□□ 0.52
PTCD3-210ENST00000473829 BBOF1Q8ND07 529 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 CD200R1Q8TD46 325 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 TRAPPC9Q96Q05 1148 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 CCNL2Q96S94 520 aaPredicted RBP18.32■□□□□ 0.52
PTCD3-210ENST00000473829 GPR21Q99679 349 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 CCDC68Q9H2F9 335 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 SOHLH2Q9NX45 425 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 OR6C2Q9NZP2 312 aa18.32■□□□□ 0.52
PTCD3-210ENST00000473829 TMEM184BQ9Y519 407 aaPredicted RBP18.32■□□□□ 0.52
PTCD3-210ENST00000473829 AHSGP02765 367 aa18.31■□□□□ 0.52
PTCD3-210ENST00000473829 ARL4DP49703 201 aa18.31■□□□□ 0.52
PTCD3-210ENST00000473829 IL11RAQ14626 422 aa18.31■□□□□ 0.52
PTCD3-210ENST00000473829 WHAMMP3Q1A5X7 153 aa18.31■□□□□ 0.52
PTCD3-210ENST00000473829 KLHL38Q2WGJ6 581 aa18.31■□□□□ 0.52
PTCD3-210ENST00000473829 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.31■□□□□ 0.52
PTCD3-210ENST00000473829 TAX1BP1Q86VP1 789 aa18.31■□□□□ 0.52
PTCD3-210ENST00000473829 ZBED8Q8IZ13 594 aa18.31■□□□□ 0.52
PTCD3-210ENST00000473829 DENND1AQ8TEH3 1009 aa18.31■□□□□ 0.52
PTCD3-210ENST00000473829 ULBP3Q9BZM4 244 aa18.31■□□□□ 0.52
PTCD3-210ENST00000473829 PPANQ9NQ55 473 aaKnown RBP18.31■□□□□ 0.52
PTCD3-210ENST00000473829 FGF21Q9NSA1 209 aa18.31■□□□□ 0.52
PTCD3-210ENST00000473829 DHRS7Q9Y394 339 aa18.31■□□□□ 0.52
PTCD3-210ENST00000473829 MRFAP1Q9Y605 127 aa18.31■□□□□ 0.52
PTCD3-210ENST00000473829 ARHGEF33A8MVX0 844 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 NDC80O14777 642 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 RASGRF2O14827 1237 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 SPAG6O75602 509 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 UCNP55089 124 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 SLC7A5Q01650 507 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 FRG1Q14331 258 aaKnown RBP18.3■□□□□ 0.52
PTCD3-210ENST00000473829 ZIC1Q15915 447 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 ARHGAP40Q5TG30 622 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 ZDHHC24Q6UX98 284 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 KIAA0408Q6ZU52 694 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 PPP1R3BQ86XI6 285 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 RASGRP3Q8IV61 690 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 FAM20CQ8IXL6 584 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 CPNE9Q8IYJ1 553 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 CACNA2D3Q8IZS8 1091 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 OR2L8Q8NGY9 312 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 ZNF501Q96CX3 271 aaPredicted RBP18.3■□□□□ 0.52
PTCD3-210ENST00000473829 UTP11Q9Y3A2 253 aaKnown RBP18.3■□□□□ 0.52
PTCD3-210ENST00000473829 PSAT1Q9Y617 370 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 COMMD10Q9Y6G5 202 aa18.3■□□□□ 0.52
PTCD3-210ENST00000473829 ESYT3A0FGR9 886 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 ISM1B1AKI9 464 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 K7ENP7 123 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 KDM1AO60341 852 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 PSIP1O75475 530 aaKnown RBP18.29■□□□□ 0.52
PTCD3-210ENST00000473829 KIAA0754O94854 1291 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 CD9P21926 228 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 CDKN2DP55273 166 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 TUBB4BP68371 445 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 ACY1Q03154 408 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 TUBB2AQ13885 445 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 TTLL9Q3SXZ7 439 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.29■□□□□ 0.52
PTCD3-210ENST00000473829 MANEAQ5SRI9 462 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 PWWP2BQ6NUJ5 590 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 INO80CQ6PI98 192 aaPredicted RBP18.29■□□□□ 0.52
PTCD3-210ENST00000473829 CCDC81Q6ZN84 652 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 CAPN12Q6ZSI9 719 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 GALNT7Q86SF2 657 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 NLGN4XQ8N0W4 816 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 NLGN4YQ8NFZ3 816 aaPredicted RBP18.29■□□□□ 0.52
PTCD3-210ENST00000473829 FBXO25Q8TCJ0 367 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 RAD51AP1Q96B01 352 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 FOPNLQ96NB1 174 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 LRRC1Q9BTT6 524 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 TUBB2BQ9BVA1 445 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 RAB17Q9H0T7 212 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 FAM60AQ9NP50 221 aa18.29■□□□□ 0.52
PTCD3-210ENST00000473829 PDE7BQ9NP56 450 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms