RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	FAM129A	Q9BZQ8	928 aa		3.54	□□□□□ -1.84
PTCD3-209	ENST00000472044	UPF2	Q9HAU5	1272 aa	Known RBP	3.54	□□□□□ -1.84
PTCD3-209	ENST00000472044	SPHK1	Q9NYA1	384 aa		3.54	□□□□□ -1.84
PTCD3-209	ENST00000472044	ZDHHC2	Q9UIJ5	367 aa		3.54	□□□□□ -1.84
PTCD3-209	ENST00000472044	CPSF3	Q9UKF6	684 aa	Known RBP	3.54	□□□□□ -1.84
PTCD3-209	ENST00000472044	LRP12	Q9Y561	859 aa		3.54	□□□□□ -1.84
PTCD3-209	ENST00000472044	FLT1	P17948	1338 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	PENK	P01210	267 aa	Predicted RBP	3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	TSHB	P01222	138 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	IGLV2-11	P01706	119 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	NR3C1	P04150	777 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	SMIM18	P0DKX4	95 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	CD22	P20273	847 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	TCEA1	P23193	301 aa	Known RBP	3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	PTGER4	P35408	488 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	PDX1	P52945	283 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	POU5F1	Q01860	360 aa	Known RBP	3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	CUL3	Q13618	768 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	SCARB2	Q14108	478 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	RBBP5	Q15291	538 aa	Known RBP	3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	CA9	Q16790	459 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	WDR38	Q5JTN6	314 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	HECTD3	Q5T447	861 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	TRAT1	Q6PIZ9	186 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	NUP54	Q7Z3B4	507 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	GLRX5	Q86SX6	157 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	TLK2	Q86UE8	772 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	CCAR2	Q8N163	923 aa	Known RBP	3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	BMPER	Q8N8U9	685 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	LMNTD1	Q8N9Z9	388 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	THAP8	Q8NA92	274 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	SLC4A11	Q8NBS3	891 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	OR1J1	Q8NGS3	322 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	OLIG1	Q8TAK6	271 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	FAM162A	Q96A26	154 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	SPATA17	Q96L03	361 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	FNBP1	Q96RU3	617 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	RAD9A	Q99638	391 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	TRAF4	Q9BUZ4	470 aa	Predicted RBP	3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	FZD8	Q9H461	694 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	CDH20	Q9HBT6	801 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	ZNF334	Q9HCZ1	680 aa	Predicted RBP	3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	GKN1	Q9NS71	199 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	PTTG2	Q9NZH5	202 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	ZNF112	Q9UJU3	913 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	RNF150	Q9ULK6	438 aa		3.53	□□□□□ -1.84
PTCD3-209	ENST00000472044	MYH14	Q7Z406	1995 aa	Known RBP	3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044		A0A1W2PPK0	400 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	WDR46	O15213	610 aa	Known RBP	3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	CLIC2	O15247	247 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	PRKRA	O75569	313 aa	Known RBP	3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	HAPLN1	P10915	354 aa	Predicted RBP	3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	EPCAM	P16422	314 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	GNAZ	P19086	355 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	EFNA1	P20827	205 aa	Predicted RBP	3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	ANOS1	P23352	680 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	NPY4R	P50391	375 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	NAGLU	P54802	743 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	CLDN15	P56746	228 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	RBP5	P82980	135 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	DMPK	Q09013	629 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	ITPRIPL2	Q3MIP1	535 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	UGT3A2	Q3SY77	523 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	SPDYC	Q5MJ68	293 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	CYP4A22	Q5TCH4	519 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	DCLRE1A	Q6PJP8	1040 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	GALNTL5	Q7Z4T8	443 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	ARHGAP22	Q7Z5H3	698 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	ABI3BP	Q7Z7G0	1075 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	TMEM139	Q8IV31	216 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	CFAP206	Q8IYR0	622 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	MAPKAPK5-AS1	Q8N8E1	139 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	C9orf43	Q8TAL5	461 aa	Predicted RBP	3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	SETD6	Q8TBK2	473 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	DEPDC1B	Q8WUY9	529 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	STAMBPL1	Q96FJ0	436 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	OTUB1	Q96FW1	271 aa	Predicted RBP	3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	ERO1A	Q96HE7	468 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	MGME1	Q9BQP7	344 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	ADPGK	Q9BRR6	497 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	LAT2	Q9GZY6	243 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	SDR39U1	Q9NRG7	319 aa	Predicted RBP	3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	ECHDC1	Q9NTX5	307 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	WWOX	Q9NZC7	414 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	TBC1D7	Q9P0N9	293 aa		3.52	□□□□□ -1.85
PTCD3-209	ENST00000472044	IGLV9-49	A0A0B4J1Y8	123 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	PLOD2	O00469	737 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	SLC22A2	O15244	555 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	AP5Z1	O43299	807 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	FRMD6-AS1	P0C7T7	363 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	ITGB6	P18564	788 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	CA4	P22748	312 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	HOXC13	P31276	330 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	TIMP3	P35625	211 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	MNDA	P41218	407 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	CDH11	P55287	796 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	B3GALT5-AS1	P59052	145 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	DLK1	P80370	383 aa		3.51	□□□□□ -1.85

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