RNA–Protein interactions for RNA: ENST00000470045.1

COMMD3-208, Transcript of COMM domain containing 3, human

TSL 2

Gene COMMD3, Length 662 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD3-208	ENST00000470045	PAM	P19021	973 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	TCN2	P20062	427 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	RORA	P35398	523 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	RAB28	P51157	221 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	EIF3B	P55884	814 aa	Known RBP	13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	GPS2	Q13227	327 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	KIR2DS3	Q14952	304 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	SLC5A12	Q1EHB4	618 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	ANKRD20A4	Q4UJ75	823 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	PLEKHS1	Q5SXH7	462 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	RNASEH2B	Q5TBB1	312 aa	Known RBP	13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	CDHR3	Q6ZTQ4	885 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	CENPU	Q71F23	418 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	TRIM73	Q86UV7	250 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	CILP2	Q8IUL8	1156 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	C19orf47	Q8N9M1	422 aa	Known RBP	13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	LINC01555	Q8NAE3	123 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	SLC38A9	Q8NBW4	561 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	OR1L3	Q8NH93	324 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	FAM117A	Q9C073	453 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	SAMD15	Q9P1V8	674 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	TUBD1	Q9UJT1	453 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045	PLAGL1	Q9UM63	463 aa		13.59	□□□□□ -0.23
COMMD3-208	ENST00000470045		A0A0J9YY10	115 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045		B8ZZF3	427 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	TMEM150C	B9EJG8	249 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045		H3BMM5	538 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	GOLGA8M	H3BSY2	632 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	PFDN6	O15212	129 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	NIPSNAP2	O75323	286 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	USP1	O94782	785 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	ATP5D	P30049	168 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	POLE2	P56282	527 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	DHX34	Q14147	1143 aa	Known RBP	13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	ZIC1	Q15915	447 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	ATP1A1-AS1	Q5TC04	95 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	PAPD7	Q5XG87	772 aa	Known RBP	13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	NEPRO	Q6NW34	567 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	CASC4	Q6P4E1	433 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	OTOA	Q7RTW8	1153 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	PPIL6	Q8IXY8	311 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	OTUD6B	Q8N6M0	293 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	OR2L8	Q8NGY9	312 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	RNF166	Q96A37	237 aa	Predicted RBP	13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	ZNF669	Q96BR6	464 aa	Predicted RBP	13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	TCTN2	Q96GX1	697 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	SIGLEC10	Q96LC7	697 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	GPR87	Q9BY21	358 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	KLHL25	Q9H0H3	589 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	DDX47	Q9H0S4	455 aa	Known RBP	13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	FAM60A	Q9NP50	221 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	INTS10	Q9NVR2	710 aa	Known RBP	13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	PCYOX1	Q9UHG3	505 aa		13.58	□□□□□ -0.24
COMMD3-208	ENST00000470045	RASGRF2	O14827	1237 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	MAP3K7	O43318	606 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	CREG1	O75629	220 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	S1PR4	O95977	384 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	FURIN	P09958	794 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	PLA2G2A	P14555	144 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	CD9	P21926	228 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	CCR10	P46092	362 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	ITGA1	P56199	1179 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	PTK6	Q13882	451 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	PRAMEF17	Q5VTA0	474 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	IZUMO3	Q5VZ72	239 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	ZNF470	Q6ECI4	717 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	FAM199X	Q6PEV8	388 aa	Predicted RBP	13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	LMNTD2	Q8IXW0	634 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	DSEL	Q8IZU8	1212 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	RUFY1	Q96T51	708 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	RAB11FIP5	Q9BXF6	653 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	ACTL8	Q9H568	366 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	PCMTD2	Q9NV79	361 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	IL1RAPL1	Q9NZN1	696 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	VPS9D1	Q9Y2B5	631 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	MRFAP1	Q9Y605	127 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	NFS1	Q9Y697	457 aa		13.57	□□□□□ -0.24
COMMD3-208	ENST00000470045	SPTA1	P02549	2419 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	MEN1	O00255	615 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	DNALI1	O14645	258 aa	Predicted RBP	13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	HCRTR1	O43613	425 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	PRICKLE3	O43900	615 aa	Predicted RBP	13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	KATNA1	O75449	491 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	MATN4	O95460	622 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	C1orf105	O95561	183 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	PKM	P14618	531 aa	Known RBP	13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	CYP2A7	P20853	494 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	IVD	P26440	423 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	PTPN4	P29074	926 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	FMO4	P31512	558 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	PTGIR	P43119	386 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	KCNAB2	Q13303	367 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	PPP1R7	Q15435	360 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	ZNF385C	Q66K41	422 aa	Predicted RBP	13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	C16orf46	Q6P387	395 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	ZNF605	Q86T29	641 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	HOOK3	Q86VS8	718 aa		13.56	□□□□□ -0.24
COMMD3-208	ENST00000470045	CREG2	Q8IUH2	290 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms