RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TRAPPC9Q96Q05 1148 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 TRIM51Q9BSJ1 452 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 TRIM31Q9BZY9 425 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 IARS2Q9NSE4 1012 aaKnown RBP14.7□□□□□ -0.06
LIMS3-201ENST00000437679 FBXO5Q9UKT4 447 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 SLC39A10Q9ULF5 831 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 LOC400499M0QZD8 3231 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 A0A0J9YY10 115 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 EFCAB8A8MWE9 144 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 NDC80O14777 642 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 BANF1O75531 89 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 TIAF1O95411 115 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 PVRP15151 417 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 CCNFP41002 786 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 ITGA8P53708 1063 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 KIR2DS3Q14952 304 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 TTLL9Q3SXZ7 439 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 MSS51Q4VC12 460 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 HIBCHQ6NVY1 386 aaPredicted RBP14.69□□□□□ -0.06
LIMS3-201ENST00000437679 CNSTQ6PJW8 725 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 SYT10Q6XYQ8 523 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 TRIM73Q86UV7 250 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 TMEM126BQ8IUX1 230 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 UNC5BQ8IZJ1 945 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 SLC39A7Q92504 469 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 WBP1Q96G27 269 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 OR2A14Q96R47 310 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 RAB11FIP5Q9BXF6 653 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 KLHL25Q9H0H3 589 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 LATS2Q9NRM7 1088 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 SPHK1Q9NYA1 384 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 CIDEBQ9UHD4 219 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 TSR3Q9UJK0 312 aaKnown RBP14.69□□□□□ -0.06
LIMS3-201ENST00000437679 PADI1Q9ULC6 663 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 NFS1Q9Y697 457 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 COMMD10Q9Y6G5 202 aa14.69□□□□□ -0.06
LIMS3-201ENST00000437679 ZNF891A8MT65 544 aaPredicted RBP14.68□□□□□ -0.06
LIMS3-201ENST00000437679 TMEM150CB9EJG8 249 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 TK2O00142 265 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 RASGRF2O14827 1237 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 SCRG1O75711 98 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 SEC31AO94979 1220 aaKnown RBP14.68□□□□□ -0.06
LIMS3-201ENST00000437679 C1orf105O95561 183 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 NTRK1P04629 796 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 ITGB2P05107 769 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 F7P08709 466 aaPredicted RBP14.68□□□□□ -0.06
LIMS3-201ENST00000437679 ERVK-10P10266 1014 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 CD9P21926 228 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 DLSTP36957 453 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 BDKRB1P46663 353 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 ARL4CP56559 192 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 GBX1Q14549 363 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 HIF1AQ16665 826 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 SLC5A12Q1EHB4 618 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 C19orf47Q8N9M1 422 aaKnown RBP14.68□□□□□ -0.06
LIMS3-201ENST00000437679 BBOF1Q8ND07 529 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 SPATA4Q8NEY3 305 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 OR2L8Q8NGY9 312 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 TTC9Q92623 222 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 N4BP2L2Q92802 583 aaPredicted RBP14.68□□□□□ -0.06
LIMS3-201ENST00000437679 KCNJ9Q92806 393 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 SLC22A18Q96BI1 424 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 LRRC39Q96DD0 335 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 CFAP36Q96G28 342 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 TCTN2Q96GX1 697 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 SLC45A3Q96JT2 553 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 IL17FQ96PD4 163 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 SLC12A9Q9BXP2 914 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 KLHL42Q9P2K6 505 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 GALPQ9UBC7 116 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 SERTAD3Q9UJW9 196 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 CROTQ9UKG9 612 aa14.68□□□□□ -0.06
LIMS3-201ENST00000437679 RUVBL2Q9Y230 463 aaKnown RBP14.68□□□□□ -0.06
LIMS3-201ENST00000437679 SNRNP200O75643 2136 aaKnown RBP14.68□□□□□ -0.06
LIMS3-201ENST00000437679 SEC16AO15027 2179 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 FAM187AA6NFU0 413 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 CPNE3O75131 537 aaKnown RBP14.67□□□□□ -0.06
LIMS3-201ENST00000437679 HAUS5O94927 633 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 MSL3P1P0C860 447 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 PEBP1P30086 187 aaKnown RBP14.67□□□□□ -0.06
LIMS3-201ENST00000437679 ELK3P41970 407 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 CLCN7P51798 805 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 CYP4F2P78329 520 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 MPP1Q00013 466 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 MC1RQ01726 317 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 GRB7Q14451 532 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 KLHL38Q2WGJ6 581 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 ACSBG2Q5FVE4 666 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 MAATS1Q7Z4T9 603 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 IGDCC3Q8IVU1 814 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 C2orf73Q8N5S3 287 aaPredicted RBP14.67□□□□□ -0.06
LIMS3-201ENST00000437679 LINC01555Q8NAE3 123 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 C2CD4AQ8NCU7 369 aaPredicted RBP14.67□□□□□ -0.06
LIMS3-201ENST00000437679 FLVCR1-AS1Q8TAF5 88 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 PWWP2AQ96N64 755 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 MENTQ9BUN1 341 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 TWSG1Q9GZX9 223 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 PPANQ9NQ55 473 aaKnown RBP14.67□□□□□ -0.06
LIMS3-201ENST00000437679 LHX9Q9NQ69 397 aa14.67□□□□□ -0.06
LIMS3-201ENST00000437679 ZC3H7BQ9UGR2 993 aaKnown RBP14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms